Rh7CG231200

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015631
Physical Location & Seq
Reverse (-)
21624265 .. 21624980
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG231200.1

Sequence Viewer

Length: 537 bp
ATGGGTGACAAACCTCTATTATCATCAAACATTACCAAGACTAATGTGCAAAAACCAATAGCTGTGCCGAGAGTCAAGCCTGCGTATGCTTCATGGTGGAGGGGAAAAGTTGCATGCAAGTCTAAACGAAATGGAGGCATGAGTCAAATAAAAAGGCAACTTGAAATAAATCTTCAACCAGAAAGATCTCAAAATGACTTAGACAATATTAGAGGACAGACTACTCACTTTGGTGATGCTGTTGCTGCTAGCCTTCGTGATAGCAACGAATCTATTATCCGAAAGAAAGTGAAAGAGACATTGGCTCGATTCAAAGATATTTGTATCGAGATAGAGAACTATGCATATTTTGGTAGGGAATCACTTGCAACCAGTGTTGTAGCATCTGGAGGATATGCTGATAATTTCCATGATTTGAACTCCTTGACTTACACCGGTCATGGAGGAAGTGTGATGCATCATAGGCTCCCAGAAGATCAAGAGCTTAAACGTGAAAACCTTGCTATGAAGAATAGTCTGGACGCGAAATCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

178

Amino Acids

19.89

Weight (kDa)

9.38

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 120 - 176 8.4e-12 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 524
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 164, 176, 313, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 2 cut(s) 62, 484
AluI AGCT 2 cut(s) 62, 484
Alw26I GTCTC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 245
AsiGI ACCGGT 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 17, 245
AsuNHI GCTAGC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 185
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 467
BmsI GCATC 4 cut(s) 226, 392, 444, 466
BmtI GCTAGC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 524
BshTI ACCGGT 1 cut(s) 434
BsiSI CCGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 290
Bsp143I GATC 2 cut(s) 185, 475
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 1 cut(s) 467
BspOI GCTAGC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 434
BssMI GATC 2 cut(s) 185, 475
BstC8I GCNNGC 3 cut(s) 81, 115, 250
BstDEI CTNAG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 2 cut(s) 188, 478
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 185, 475
BstMWI GCNNNNNNNGC 2 cut(s) 245, 463
BstNSI RCATGY 1 cut(s) 117
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 3 cut(s) 81, 115, 250
Cfr10I RCCGGY 1 cut(s) 434
CseI GACGC 1 cut(s) 530
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 5 cut(s) 93, 114, 139, 410, 440
CviJI RGCY 6 cut(s) 62, 79, 252, 305, 466, 484
CviKI_1 RGCY 6 cut(s) 62, 79, 252, 305, 466, 484
DdeI CTNAG 1 cut(s) 199
DpnI GATC 2 cut(s) 187, 477
DpnII GATC 2 cut(s) 185, 475
EcoT22I ATGCAT 2 cut(s) 346, 459
FaeI CATG 5 cut(s) 96, 117, 142, 413, 443
FatI CATG 5 cut(s) 92, 113, 138, 409, 439
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 408
HapII CCGG 1 cut(s) 435
HgaI GACGC 1 cut(s) 530
Hin1II CATG 5 cut(s) 96, 117, 142, 413, 443
HinfI GANTC 5 cut(s) 72, 142, 269, 309, 359
HpaII CCGG 1 cut(s) 435
HphI GGTGA 2 cut(s) 17, 245
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 5 cut(s) 257, 328, 387, 479, 518
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 6 cut(s) 49, 113, 117, 344, 368, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 463
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 5 cut(s) 96, 117, 142, 413, 443
Kzo9I GATC 2 cut(s) 185, 475
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 7 cut(s) 93, 192, 372, 385, 448, 483, 503
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 4 cut(s) 226, 392, 444, 466
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 187, 477
MboI GATC 2 cut(s) 185, 475
MboII GAAGA 3 cut(s) 164, 485, 520
MflI RGATCY 1 cut(s) 185
MluCI AATT 1 cut(s) 403
MlyI GAGTC 2 cut(s) 81, 151
MnlI CCTC 6 cut(s) 24, 93, 128, 206, 383, 437
Mph1103I ATGCAT 2 cut(s) 346, 459
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 245, 463
NdeII GATC 2 cut(s) 185, 475
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 5 cut(s) 96, 117, 142, 413, 443
NlaIV GGNNCC 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 5
NsiI ATGCAT 2 cut(s) 346, 459
NspI RCATGY 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 231
PaeI GCATGC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 269, 309, 359
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 2 cut(s) 80, 150
PpsI GAGTC 2 cut(s) 80, 150
PspN4I GGNNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 185, 475
SchI GAGTC 2 cut(s) 81, 151
SetI ASST 5 cut(s) 16, 64, 486, 493, 501
SfaNI GCATC 4 cut(s) 226, 392, 444, 466
SmiMI CAYNNNNRTG 1 cut(s) 231
SphI GCATGC 1 cut(s) 117
Sse9I AATT 1 cut(s) 403
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 249
TaiI ACGT 1 cut(s) 493
TaqI TCGA 2 cut(s) 307, 327
TasI AATT 1 cut(s) 403
TfiI GAWTC 3 cut(s) 269, 309, 359
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 81, 521
TspRI CASTG 1 cut(s) 379
XceI RCATGY 1 cut(s) 117
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 2 cut(s) 346, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.