Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002918.1

Orthogroup ID

OG0015631

Physical Location & Seq

Genomic Coordinates Forward (+)

100699 .. 101683

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002918.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaggaaagggagaaagcacagtgggaaagagcaaggtgagggaaaacttgagaaacgtttacagttactcaaagaatttcattctactacagaaatgagcgtcatgggaaaaattgaaccaggaggacttgctcccatgcaagcttacactggtcgtgcatggaggaagtgtgatgcatgcatcataggctcccagaacatcaagagcttaaacgtggaaaccttgctatatatgaagaatagtctcgacgggaagaatcctgttagagtgatctgcagctctgaatcatcaggtggaagagataagaaaaatatgtatgttggactatatttggtggagaagtgttggaaggaaataggggactatggcaagttagtttacaagtttcaactcaacagaaggagggccagagctcgatcgttggcagaaatatcctctgaattggaaggcaacatcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

SAD_SRA

Protein Analysis

154

Amino Acids

17.42

Weight (kDa)

9.69

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19613 FvH4_5g19613
rosa_laevigata	RLG00000003416 RLG00000003472
rosa_multiflora	Rmu_sc0002918.1_g000010 Rmu_sc0005112.1_g000012
rosa_samantha	Rh7AG218000 Rh7BG210600 Rh7BG224300 Rh7BG300400 Rh7BG300600 Rh7CG224700 Rh7CG231200 Rh7DG225300 Rh7DG309100
rosa_wichuraiana	Rw7G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	119, 392
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	146, 210, 282, 416
AluI	AGCT	4 cut(s)	146, 210, 282, 416
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	2 cut(s)	90, 277
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	166, 192
BpuEI	CTTGAG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	273, 419
BspANI	GGCC	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	273, 419
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	23, 66
Bst6I	CTCTTC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	144, 181
BstKTI	GATC	2 cut(s)	276, 422
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	273, 419
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	2 cut(s)	90, 277
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	28, 150
Cac8I	GCNNGC	2 cut(s)	144, 181
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	1 cut(s)	91
CviAII	CATG	4 cut(s)	106, 139, 162, 180
CviJI	RGCY	6 cut(s)	146, 192, 210, 282, 410, 416
CviKI_1	RGCY	6 cut(s)	146, 192, 210, 282, 410, 416
DpnI	GATC	2 cut(s)	275, 421
DpnII	GATC	2 cut(s)	273, 419
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	121
EcoT22I	ATGCAT	2 cut(s)	181, 185
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	4 cut(s)	109, 142, 165, 183
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	105, 138, 161, 179
Fnu4HI	GCNGC	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	1 cut(s)	463
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	410
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	109, 142, 165, 183
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	2 cut(s)	259, 287
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	62, 382
Hpy188I	TCNGA	2 cut(s)	286, 442
Hpy188III	TCNNGA	2 cut(s)	205, 248
Hpy8I	GTNNAC	2 cut(s)	62, 382
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	346, 396, 443
HpyCH4III	ACNGT	2 cut(s)	23, 66
HpyCH4IV	ACGT	2 cut(s)	58, 216
HpyCH4V	TGCA	5 cut(s)	142, 161, 179, 183, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	58, 216
Hsp92II	CATG	4 cut(s)	109, 142, 165, 183
Kzo9I	GATC	2 cut(s)	273, 419
LmnI	GCTCC	2 cut(s)	139, 197
LpnPI	CCDG	7 cut(s)	108, 135, 138, 209, 276, 279, 424
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	2 cut(s)	166, 192
MaeI	CTAG	1 cut(s)	463
MaeII	ACGT	2 cut(s)	58, 216
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	2 cut(s)	275, 421
MboI	GATC	2 cut(s)	273, 419
MboII	GAAGA	3 cut(s)	250, 268, 312
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	77, 114, 443
MmeI	TCCRAC	2 cut(s)	304, 329
MnlI	CCTC	5 cut(s)	34, 119, 159, 399, 448
Mph1103I	ATGCAT	2 cut(s)	181, 185
MseI	TTAA	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	2 cut(s)	273, 419
NlaIII	CATG	4 cut(s)	109, 142, 165, 183
NlaIV	GGNNCC	1 cut(s)	193
NsiI	ATGCAT	2 cut(s)	181, 185
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	259, 287
PkrI	GCNGC	1 cut(s)	281
Ple19I	CGATCG	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	273, 419
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	9 cut(s)	40, 61, 148, 212, 219, 227, 284, 298, 418
SfaNI	GCATC	2 cut(s)	166, 192
SfcI	CTRYAG	2 cut(s)	90, 277
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	3 cut(s)	77, 114, 443
SspMI	CTAG	1 cut(s)	463
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	23, 66
TaiI	ACGT	2 cut(s)	61, 219
TaqI	TCGA	2 cut(s)	249, 418
TasI	AATT	3 cut(s)	77, 114, 443
TfiI	GAWTC	2 cut(s)	259, 287
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	2 cut(s)	28, 157
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	71, 251
TspRI	CASTG	2 cut(s)	28, 157
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	463
Zsp2I	ATGCAT	2 cut(s)	181, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.