Rh7CG224700

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015631
Physical Location & Seq
Reverse (-)
20786358 .. 20787331
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG224700.1

Sequence Viewer

Length: 609 bp
ATGAGGAAAGGGAGAAAGCACAGTGGGAAAGAGCAAGGTGAGGGAAAACTTGAGAAACGTTTACAGTTACTCAAAGAATTTCATTCTACTACAGAAATGAGCGGCATGGGAAAAATTGAACCAGGAGGACTTGCTTCCATGCAAGAGTGGAGCTCGATCACTATTACTGGCTTACATCGCCAGACAGAAGGTGGAATAGACTATGCAGATTTTTGTAGGGAATCACTTGCAACCAGTATTGTAGCATCTGGAGGATATGCTGACTATTTCCATGATTTGAACTCCTTGACTTACACCGGTCGTGCATGGAGGAAGTGTGATGCATGCATCTTAGGCTCCCAGAACATCAAGAGCTTAAACGGCGAAACCTTGCTATATATGAAGAATAGTCTCGACGGGAAGAATCCTGTTAGAGTGATCTGCAGCTCTGAATCATCAGGTGGAAGAGATAAGAAATATATGTATGTTGGACTATATTTGGTGGAGAAGTATTGGAAGGAAATAGGGGACTATGGCAAGTTAGTTTACAAGTTTCAACTCAACAGAATGAGGGCCAGAGCTCGATCGTTGGTAGAAATAACCTCTGAATTGGTAGGCAACATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

202

Amino Acids

22.7

Weight (kDa)

9.17

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 49 - 184 3.3e-28 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 1 cut(s) 102
AclI AACGTT 1 cut(s) 58
AcsI RAATTY 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 119, 280, 536
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 153, 354, 426, 560
AluI AGCT 4 cut(s) 153, 354, 426, 560
Alw21I GWGCWC 2 cut(s) 155, 562
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 1 cut(s) 77
AsiGI ACCGGT 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 50
BanII GRGCYC 2 cut(s) 155, 562
Bbv12I GWGCWC 2 cut(s) 155, 562
BbvI GCAGC 1 cut(s) 435
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 607
BfmI CTRYAG 2 cut(s) 90, 421
BisI GCNGC 2 cut(s) 103, 424
BlsI GCNGC 2 cut(s) 104, 425
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 254, 310, 336
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 172, 234
BseBI CCWGG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 172, 234
BseXI GCAGC 1 cut(s) 435
Bsh1285I CGRYCG 2 cut(s) 301, 566
BshFI GGCC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 2 cut(s) 301, 566
BsiHKAI GWGCWC 2 cut(s) 155, 562
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 155, 562
Bsp143I GATC 3 cut(s) 156, 417, 563
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 172, 234
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 3 cut(s) 156, 417, 563
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 23, 66
Bst6I CTCTTC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 331
BstKTI GATC 3 cut(s) 159, 420, 566
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 156, 417, 563
BstMCI CGRYCG 2 cut(s) 301, 566
BstMWI GCNNNNNNNGC 3 cut(s) 177, 333, 360
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 90, 421
BstV1I GCAGC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 552
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 5 cut(s) 106, 139, 272, 306, 324
CviJI RGCY 7 cut(s) 153, 171, 336, 354, 426, 554, 560
CviKI_1 RGCY 7 cut(s) 153, 171, 336, 354, 426, 554, 560
DdeI CTNAG 1 cut(s) 331
DpnI GATC 3 cut(s) 158, 419, 565
DpnII GATC 3 cut(s) 156, 417, 563
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Ecl136II GAGCTC 2 cut(s) 153, 560
Eco24I GRGCYC 2 cut(s) 155, 562
Eco53kI GAGCTC 2 cut(s) 153, 560
EcoICRI GAGCTC 2 cut(s) 153, 560
EcoRII CCWGG 1 cut(s) 121
EcoT22I ATGCAT 2 cut(s) 325, 329
EcoT38I GRGCYC 2 cut(s) 155, 562
FaeI CATG 5 cut(s) 109, 142, 275, 309, 327
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 105, 138, 271, 305, 323
Fnu4HI GCNGC 2 cut(s) 103, 424
FriOI GRGCYC 2 cut(s) 155, 562
Fsp4HI GCNGC 2 cut(s) 103, 424
FspBI CTAG 1 cut(s) 607
GluI GCNGC 2 cut(s) 103, 424
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 297
Hin1II CATG 5 cut(s) 109, 142, 275, 309, 327
HinfI GANTC 3 cut(s) 221, 403, 431
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 62, 526
Hpy188I TCNGA 2 cut(s) 430, 586
Hpy188III TCNNGA 3 cut(s) 249, 349, 392
Hpy8I GTNNAC 2 cut(s) 62, 526
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 182, 490
HpyCH4III ACNGT 2 cut(s) 23, 66
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 7 cut(s) 142, 206, 230, 305, 323, 327, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 333, 360
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 5 cut(s) 109, 142, 275, 309, 327
Kzo9I GATC 3 cut(s) 156, 417, 563
LmnI GCTCC 2 cut(s) 150, 341
Lsp1109I GCAGC 1 cut(s) 435
LweI GCATC 3 cut(s) 254, 310, 336
MaeI CTAG 1 cut(s) 607
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 66
MalI GATC 3 cut(s) 158, 419, 565
MbiI CCGCTC 1 cut(s) 102
MboI GATC 3 cut(s) 156, 417, 563
MboII GAAGA 3 cut(s) 394, 412, 456
MhlI GDGCHC 2 cut(s) 155, 562
MluCI AATT 3 cut(s) 77, 114, 587
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 6 cut(s) 34, 119, 245, 303, 543, 592
Mph1103I ATGCAT 2 cut(s) 325, 329
MseI TTAA 1 cut(s) 356
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 177, 333, 360
NdeII GATC 3 cut(s) 156, 417, 563
NlaIII CATG 5 cut(s) 109, 142, 275, 309, 327
NlaIV GGNNCC 1 cut(s) 337
NsiI ATGCAT 2 cut(s) 325, 329
NspI RCATGY 1 cut(s) 327
PaeI GCATGC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 221, 403, 431
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 2 cut(s) 104, 425
Ple19I CGATCG 1 cut(s) 566
Psp124BI GAGCTC 2 cut(s) 155, 562
Psp1406I AACGTT 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 552
PstI CTGCAG 1 cut(s) 425
PvuI CGATCG 1 cut(s) 566
SacI GAGCTC 2 cut(s) 155, 562
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 103, 424
Sau3AI GATC 3 cut(s) 156, 417, 563
Sau96I GGNCC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 2 cut(s) 155, 562
SfaNI GCATC 3 cut(s) 254, 310, 336
SfcI CTRYAG 2 cut(s) 90, 421
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 327
Sse9I AATT 3 cut(s) 77, 114, 587
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 607
SstI GAGCTC 2 cut(s) 155, 562
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 23, 66
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 155, 393, 562
TasI AATT 3 cut(s) 77, 114, 587
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 3 cut(s) 221, 403, 431
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 28
TseI GCWGC 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 71, 395
TspRI CASTG 1 cut(s) 28
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XspI CTAG 1 cut(s) 607
Zsp2I ATGCAT 2 cut(s) 325, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.