Rw7G026250

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015631
Physical Location & Seq
Forward (+)
33329800 .. 33331540
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026250.1

Sequence Viewer

Length: 396 bp
ATGGGTTACAATGTTGTGCACAAGGCCAACCCATATACACCATTGCCACCCAGCACCAAGCTAGAACCTGGAGAGGTTTACCATCTTGTGCCAAACCTTGTATGGCTCAATAAGGCTTCAGTTCTTTCAAAAATAGCCCTCCAAGAACAAGAAAGCGGAAAAAGACAGAAGGTGAGGATTGTGGTGACTAGAGAGCAATTGGAGCTGTTGTTGAATGGTGCAAAGAAGATCCGGGATGAAACAACTACAATGTTTAGGCTATTCCAGAGGGAAGCACAGCTTTTTCCAGTTTTTGCTGAAAGTAGAAGTAGTACTTCATCATCTGTCAGTGGTGATCATGGGAATGGTGAGGTTGAAGATGAGAATGACCTTGACTTGGAACCCACTGTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

131

Amino Acids

14.65

Weight (kDa)

5.62

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 376, 389
AgsI TTSAA 3 cut(s) 129, 214, 356
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 61, 205, 280
AluI AGCT 3 cut(s) 61, 205, 280
Alw21I GWGCWC 1 cut(s) 21
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 24
ApaLI GTGCAC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 4 cut(s) 184, 196, 344, 359
BaeGI GKGCMC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 2 cut(s) 62, 189
BfmI CTRYAG 1 cut(s) 387
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 69, 233
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 69, 233
BpmI CTGGAG 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 389
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 376, 389
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 376, 389
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 228, 334
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 287
BssMI GATC 2 cut(s) 228, 334
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 388
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 2 cut(s) 231, 337
BstMBI GATC 2 cut(s) 228, 334
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 67, 231
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 334, 384
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 338
CviJI RGCY 8 cut(s) 26, 61, 106, 116, 137, 205, 259, 280
CviKI_1 RGCY 8 cut(s) 26, 61, 106, 116, 137, 205, 259, 280
CviQI GTAC 1 cut(s) 312
DpnI GATC 2 cut(s) 230, 336
DpnII GATC 2 cut(s) 228, 334
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 341
FaiI YATR 4 cut(s) 34, 36, 103, 339
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 298, 330
FatI CATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 334
FokI GGATG 1 cut(s) 248
FspBI CTAG 2 cut(s) 62, 189
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 232
Hin1II CATG 1 cut(s) 341
HpaII CCGG 1 cut(s) 232
HphI GGTGA 4 cut(s) 184, 196, 344, 359
Hpy166II GTNNAC 2 cut(s) 19, 79
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 19, 79
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 19, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
Hsp92II CATG 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 228, 334
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 54, 64, 81, 245, 278, 300
MaeI CTAG 2 cut(s) 62, 189
MaeIII GTNAC 2 cut(s) 5, 184
MalI GATC 2 cut(s) 230, 336
MboI GATC 2 cut(s) 228, 334
MboII GAAGA 2 cut(s) 238, 368
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 197
MnlI CCTC 5 cut(s) 67, 149, 168, 261, 343
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 2 cut(s) 69, 233
MunI CAATTG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 228, 334
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 381
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 342
Sau3AI GATC 2 cut(s) 228, 334
ScaI AGTACT 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 69, 233
SduI GDGCHC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 62, 189
StyD4I CCNGG 2 cut(s) 67, 231
TaaI ACNGT 1 cut(s) 388
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 311
TscAI CASTG 2 cut(s) 334, 391
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 252, 306
TspRI CASTG 2 cut(s) 334, 391
VneI GTGCAC 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XspI CTAG 2 cut(s) 62, 189
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.