Rh7AG218000

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015631
Physical Location & Seq
Reverse (-)
20290304 .. 20290881
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG218000.1

Sequence Viewer

Length: 294 bp
ATGAGTCCAATAAAAAGGCAACTTGAAATAAATCTTCAACCAGAAAGATCTCAAAATGACTCAGACAATATTAGAGGGCAGACTACTCACTTTGACTATGCATATTTTGGTAGGGAATCACTTGCAACCAGTGTTGTAGCATCTGGAAGATATGCTGATAATTTCCATGATTTGAACTCCTTGACTTACACCGGTCATGGAGGAAGTGTGATGCATCATAGGCTCCCAGAAGATCAAGAGCTTAAACGTGAAAACCTTGCTATGAAGAATAGTATGGACGCGAAATCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

6.17

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 37 - 95 1.2e-12 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 3 cut(s) 26, 38, 175
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AsiGI ACCGGT 1 cut(s) 191
BglII AGATCT 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 224
BmsI GCATC 3 cut(s) 149, 201, 223
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 281
BshTI ACCGGT 1 cut(s) 191
BsiSI CCGG 1 cut(s) 192
Bsp143I GATC 2 cut(s) 47, 232
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 191
BssMI GATC 2 cut(s) 47, 232
BstDEI CTNAG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 2 cut(s) 50, 235
BstMBI GATC 2 cut(s) 47, 232
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstUI CGCG 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 1 cut(s) 287
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 2 cut(s) 167, 197
CviJI RGCY 2 cut(s) 223, 241
CviKI_1 RGCY 2 cut(s) 223, 241
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 49, 234
DpnII GATC 2 cut(s) 47, 232
EcoT22I ATGCAT 2 cut(s) 103, 216
FaeI CATG 2 cut(s) 170, 200
FaiI YATR 8 cut(s) 99, 103, 153, 168, 198, 219, 263, 275
FatI CATG 2 cut(s) 166, 196
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 170, 200
HinfI GANTC 3 cut(s) 4, 59, 116
HpaII CCGG 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 144, 236
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 101, 125, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 2 cut(s) 170, 200
Kzo9I GATC 2 cut(s) 47, 232
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 54, 129, 142, 205, 240
LweI GCATC 3 cut(s) 149, 201, 223
MaeII ACGT 1 cut(s) 247
MalI GATC 2 cut(s) 49, 234
MboI GATC 2 cut(s) 47, 232
MboII GAAGA 4 cut(s) 26, 159, 242, 277
MflI RGATCY 1 cut(s) 47
MluCI AATT 1 cut(s) 160
MlyI GAGTC 2 cut(s) 13, 53
MnlI CCTC 2 cut(s) 68, 194
Mph1103I ATGCAT 2 cut(s) 103, 216
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 47, 232
NlaIII CATG 2 cut(s) 170, 200
NlaIV GGNNCC 1 cut(s) 224
NsiI ATGCAT 2 cut(s) 103, 216
PfeI GAWTC 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 191
PleI GAGTC 2 cut(s) 12, 53
PpsI GAGTC 2 cut(s) 12, 53
PspN4I GGNNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 47
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 2 cut(s) 47, 232
SchI GAGTC 2 cut(s) 13, 53
SetI ASST 3 cut(s) 243, 250, 258
SfaNI GCATC 3 cut(s) 149, 201, 223
Sse9I AATT 1 cut(s) 160
SspI AATATT 1 cut(s) 70
TaiI ACGT 1 cut(s) 250
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 1 cut(s) 136
Zsp2I ATGCAT 2 cut(s) 103, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.