Rh7BG300600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015631
Physical Location & Seq
Forward (+)
28561622 .. 28562063
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG300600.1

Sequence Viewer

Length: 399 bp
ATGAGGAAAGGGAGAAAGCAGAGGGGGAAAGGGCAAGGTGAGGGAAAACTTGAGATATGTTTACAATTACTCAAGGAAATTCATTCTATTGTAGAAATGAGTGGCATGGGAAAATTGAACCAGGGAGACTTGCTCCCGCGAACTCTCAAGAGGAGCTGGCATAGAGGCAGCAGTCAGTGCTTGTTTCTCTGCCGACTGCTGTCCAAATACCTATCTCTGCGGCGCCAACTGTTGTCCCGGGATGAAATAAAGTTTAGGTTGGTCCTGAGGGAAGCACCAGTTTTTCCACTTTCTGCTGAAAGAGGAAGTAGTACTTCATCATCTGTTAGTGATGATCATGGGAATGGTGAAGTTGAATATGAGAATGACCTTGACTTGGAACTCATTGTAATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

9.33

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 137, 220
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 2 cut(s) 118, 356
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 2 cut(s) 238, 239
AsuHPI GGTGA 2 cut(s) 50, 359
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 266
BanI GGYRCC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 122
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 2 cut(s) 238, 239
BcoDI GTCTC 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 2 cut(s) 169, 221
BlsI GCNGC 2 cut(s) 170, 222
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 3 cut(s) 122, 238, 239
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 3 cut(s) 122, 238, 239
BoxI GACNNNNGTC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpuEI CTTGAG 3 cut(s) 56, 71, 131
BpuMI CCSGG 2 cut(s) 238, 239
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 121, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 121, 237
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 137, 220
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 121, 237
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 120, 236, 237
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 262
Cfr9I CCCGGG 1 cut(s) 237
Csp6I GTAC 1 cut(s) 312
CviAII CATG 2 cut(s) 106, 338
CviJI RGCY 1 cut(s) 156
CviKI_1 RGCY 1 cut(s) 156
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 266
DinI GGCGCC 1 cut(s) 224
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
FaeI CATG 2 cut(s) 109, 341
FaiI YATR 5 cut(s) 58, 107, 162, 339, 360
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 105, 337
FauI CCCGC 1 cut(s) 144
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 169, 221
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 169, 221
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 169, 221
HaeII RGCGCY 1 cut(s) 226
HapII CCGG 1 cut(s) 238
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 109, 341
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HpaII CCGG 1 cut(s) 238
HphI GGTGA 2 cut(s) 50, 359
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 148, 265
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 266
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 109, 341
HspAI GCGC 1 cut(s) 223
KasI GGCGCC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 138, 153
LpnPI CCDG 6 cut(s) 107, 134, 142, 251, 278, 291
Lsp1109I GCAGC 1 cut(s) 180
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MluCI AATT 3 cut(s) 65, 78, 113
Mly113I GGCGCC 1 cut(s) 223
MnlI CCTC 6 cut(s) 15, 34, 144, 158, 261, 296
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 3 cut(s) 122, 238, 239
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 177
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 2 cut(s) 238, 239
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 109, 341
NlaIV GGNNCC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 170, 222
PluTI GGCGCC 1 cut(s) 226
PshAI GACNNNNGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 342
SatI GCNGC 2 cut(s) 169, 221
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 313
ScrFI CCNGG 3 cut(s) 122, 238, 239
SetI ASST 5 cut(s) 40, 158, 213, 260, 372
SfoI GGCGCC 1 cut(s) 224
SinI GGWCC 1 cut(s) 262
SmaI CCCGGG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 50, 71, 146
SmoI CTYRAG 3 cut(s) 50, 71, 146
Sse9I AATT 3 cut(s) 65, 78, 113
SsiI CCGC 2 cut(s) 137, 220
SspDI GGCGCC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 120, 236, 237
TaaI ACNGT 1 cut(s) 231
TasI AATT 3 cut(s) 65, 78, 113
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 223
TscAI CASTG 1 cut(s) 182
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 71, 258, 306
TspMI CCCGGG 1 cut(s) 237
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 78
XmaI CCCGGG 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.