Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009819

Physical Location & Seq

Genomic Coordinates Forward (+)

55272667 .. 55279696

Gene Structure 7030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGAGGGCTCATCCCAGGCACGAACGCCGATGGGCCTCGGACTCGGTCCCGGAGAAGACGCTAGTCAGCACTGGCACGTCCCCCGGGACTGAGTCTACCTCGGCGGAGGAGTTCGTCGAGGTGACGCTAGATTTGCAGGACGACAACACCATCGTCCTCCGCAGCGTCGAGCCGGCGACGGTGATCAATATTACAGACGACGGAGGAGCCGAGGCTACTCCGGCGTCTTCCTCGAGGTCGCCGTCGATAAGGCGGAGCTCGTCCAACAGCAGAATCAGGCAGTTCTCTCAGGAGCTGAAAGCGGAGGCGGTGGCCAAGGCCAAGCAGTTCTCTCAGGAGCTCAAGGCCGAGCTGAGGCGGTTCTCGTGGAGCCATGGAAATGCATCGCGAGTGCTGGCTGCTTCTTCGGCGGTTGCTTCTCAGAATGACTGCGGAGGCGGAGGAGGAGGAGCCGGGAGCGGTTATTATGACTCGGCTCTGGCGGCGAGGGCTCTGAGGAGGCAGCGGGCTCAGCTCGATCGGACCCGCTCCGGAGCGCAGAAGGCCCTCCGGGGACTGAGGTTCATCAGCAACTGCAAGAACAAGAGCAATGGCGTGGATGCATGGAACGAGGTGGAGAGCAATTTCAACAAGCTCGCCAAAGACGGCAACCTCTACCGCGCCGATTTCGCCCAATGCATAGGAATGAAAGATTCGAAGGAGTTTGCTCTGGAACTGTTTGATGCGCTGGGCCGGAGACGAAGACTAAAGGTGGAGAGAATCAGCAAAGACGAGCTTTACGAGTTTTGGTCTCAAATTTCCGATCAGAGTTTCGATTCAAGGCTTCAGATCTTCTTCGACATGGTCGACAAAAATGAAGATGGAAGAATTACCGAAGAAGAAGTAAAAGAGATCATCATGCTGAGTGCTTGTGCCAACAAGTTATCAAGATTGAAGGAACAAGCAGAGGAATATGCAGCCCTGATCATGGAAGAGTTGGATCCTGAAAGACTTGGCTATATTGAGCTATGGCAATTGGAGACCCTTTTGCTCCAAAAGGACACGTACCTAAACTACAGCCAAGCACTGAGCTACACAAGCCAAGCCTTAAGCCAGAACCTCCAAGGCCTCCGAAGGCGAAGCCCAATACGCAGAATCAGCAGCAAGTGCCTCTACTACTTGCAAGAAAACTGGAAGAGACTCTGGGTTTTGGCACTCTGGGTGTGCATTATGATCGGACTTTTTACGTGGAAGTTCTTTCAGTACAAGCAGAAAAAATCCTTTCATATAATGGGGTACTGTCTTCTCACCGCCAAGGGTGCGGCAGAGACGTTGAAGTTCAACATGGCTCTGGTGCTGTTACCGGTGTGTAGAAACACCATTACTTGGCTCAGGAACACCAGGCTCGGGTTCGTCGTGCCTTTCGATGACAATATCAACTTCCACAAGAGCATTGCTGCAGCCATTGTAATCGGTGTTATTCTCCATGCTGGGAACCATCTTGCGTGTGATTTTCCGAGGCTTATAAAGGTGTCTGAATCAGTCTATGAGGAGTATTTGCATGACGACTTTGGAACGCATAAACCCACATACGTAGATTTGGTTAAAGGGGCCGAAGGAGTGACTGGAATTATAATGGTGGTATGCATGGTAATTGCTTTCACACTTGCAACAAAATGGTTCAGGCGGAGCCTCATTAAGCTGCCCAAGCCCTTCAATAGGCTCACTGGTTACAATGCATTTTGGTATTCACATCACTTATTTGTCATCGTCTATGCCTTGCTCGTTATCCACGGAGTCTTCCTCTATCTTGTGCACAATTGGTACCTTAAGACGACTTGGATGTATCTTTCCGTTCCAGTTATACTATATGCTGGTGAAAGAATTCTGAGAGTCTTCCGGTCTGGTTTTTATACTGTCCGTCTTCTGAAGGTTGCTATTTATCCGGGAAATGTTCTCACATTGCAAATGTCTAAGCCACCCCAGTTTAAATACAAAAGTGGACAGTACATGTTTGTTCAGTGCCCAGCTGTTTCCCCTTTTGAGTGGCATCCGTTTTCAATTACATCTGCTCCCGGTGATGACTACCTTAGCGTTCACATCCGTCAGCTTGGTGACTGGACACAAGAGCTTAAGAGGGTTTTCTCAGAAGCCTGTGAGCCTCCCTTAGCTGGGAAGAGTGGCCTGCTAAGGGCTGATGAAACCACCAAGAAAAGTTTGCCCAAGCTTTTAATAGATGGACCTTATGGTGCCCCGGCACAAGACTACCGGAAATATGATGTCCTGCTACTTGTTGGTCTTGGGATTGGGGCGACACCTTTCATTAGTATTTTGAAAGATTTGCTCAACAATATTGTCAAAATGGAGGAACAGGCAGATTCTCTCTCAGATTTCAGTAGAAATTCAGACCTAAGTTCAGGAAGTACAGATTCTCCCAACAAGGTTTATCTGAAACGAAAAAAGCCACTGAAGACCACCAATGCCTACTTCTATTGGGTAACTAGGGAGCAAGGCTCATTTGATTGGTTCAAAGGAGTGATGAATGAAGTTGCAGATCTTGATCAAAGGGGTGTCATTGAGATGCACAATTATTTGACTAGTGTGTATGAGGAAGGCGATGCTCGATCAACACTCATCACCATGGTCCAAGCTCTCAACCATGCTAAGAATGGGGTTGATATTGTATCTGGCACTAGGGTTCGCACTCATTTTGCAAGGCCTAACTGGAAGAAAGTTTTCTCAAAATTTTCCTCCAAGCACTATGGTGCAAGGATAGGGGTATTCTATTGTGGAGCACCAGTTTTGGCCAAAGAACTCAGCAAGCTTTGCTATGAGTACAATCAAAAAGGTCTAACCAAATTTGAATTCCACAAGGAGCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

955

Amino Acids

108.43

Weight (kDa)

9.21

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	171 - 273	1.2e-39	Respiratory burst NADPH oxidase
Ferric_reduct	PF01794	442 - 589	2.7e-12	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	631 - 746	1.7e-36	FAD-binding domain
NAD_binding_6	PF08030	752 - 936	1.1e-51	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64060
fragaria_vesca	FvH4_5g03310 FvH4_5g03310 FvH4_5g03310 FvH4_5g03310
malus_domestica	MD06G1093000.v1.1 MD14G1113700.v1.1
prunus_persica	Prupe.5G107400_v2.0.a1
pyrus_communis	pycom06g08880
rosa_chinensis	RchiOBHm_Chr7g0196471
rosa_laevigata	RLG00000004012
rosa_multiflora	Rmu_co8333625.1_g000001 Rmu_sc0000736.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259290
rosa_rugosa	Rorug07G0033600 Rorug07G0033700
rosa_samantha	Rh7AG158000 Rh7BG159900 Rh7CG166400 Rh7DG159200
rosa_wichuraiana	Rw7G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1505, 1613
AbsI	CCTCGAGG	1 cut(s)	232
Acc65I	GGTACC	1 cut(s)	1803
AccB1I	GGYRCC	2 cut(s)	1803, 2228
AccB7I	CCANNNNNTGG	1 cut(s)	1365
AccBSI	CCGCTC	2 cut(s)	459, 528
AccI	GTMKAC	2 cut(s)	95, 846
AccII	CGCG	2 cut(s)	388, 660
AccIII	TCCGGA	1 cut(s)	530
AclWI	GGATC	2 cut(s)	974, 987
AcoI	YGGCCR	2 cut(s)	312, 2784
AcsI	RAATTY	6 cut(s)	795, 1863, 2380, 2723, 2837, 2843
AcuI	CTGAAG	3 cut(s)	809, 1928, 2468
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	7 cut(s)	1046, 1244, 1277, 1805, 1988, 2404, 2816
AfiI	CCNNNNNNNGG	8 cut(s)	354, 967, 1365, 1386, 1698, 2150, 2151, 2170
AflII	CTTAAG	3 cut(s)	1087, 1808, 2111
AflIII	ACRYGT	2 cut(s)	1041, 1989
AgeI	ACCGGT	1 cut(s)	1342
AhlI	ACTAGT	1 cut(s)	2576
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	2 cut(s)	14, 1379
AjuI	GAANNNNNNNTTGG	4 cut(s)	2450, 2482, 2828, 2860
AleI	CACNNNNGTG	1 cut(s)	2742
Alw21I	GWGCWC	5 cut(s)	260, 342, 1797, 2776, 2859
Alw26I	GTCTC	5 cut(s)	730, 795, 1013, 1171, 1301
Alw44I	GTGCAC	1 cut(s)	1793
AlwI	GGATC	2 cut(s)	974, 987
AlwNI	CAGNNNCTG	2 cut(s)	295, 573
Ama87I	CYCGRG	3 cut(s)	83, 232, 1385
Aor13HI	TCCGGA	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	1793
ApeKI	GCWGC	8 cut(s)	162, 398, 502, 956, 1140, 1436, 1439, 1681
ApoI	RAATTY	6 cut(s)	795, 1863, 2380, 2723, 2837, 2843
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AsiGI	ACCGGT	1 cut(s)	1342
Asp700I	GAANNNNTTC	2 cut(s)	1863, 2714
Asp718I	GGTACC	1 cut(s)	1803
AspLEI	GCGC	3 cut(s)	538, 662, 727
AspS9I	GGNCC	8 cut(s)	33, 46, 522, 544, 730, 1590, 2219, 2623
AsuC2I	CCSGG	8 cut(s)	50, 84, 85, 454, 551, 1926, 2055, 2234
AsuHPI	GGTGA	7 cut(s)	133, 193, 1279, 1868, 2069, 2105, 2608
AsuII	TTCGAA	1 cut(s)	695
AvaI	CYCGRG	3 cut(s)	83, 232, 1385
AvaII	GGWCC	4 cut(s)	46, 522, 2219, 2623
BaeGI	GKGCMC	3 cut(s)	1797, 2006, 2233
BalI	TGGCCA	2 cut(s)	314, 2786
BamHI	GGATCC	1 cut(s)	979
BanI	GGYRCC	2 cut(s)	1803, 2228
BanII	GRGCYC	5 cut(s)	10, 260, 342, 493, 511
BauI	CACGAG	1 cut(s)	364
BbsI	GAAGAC	8 cut(s)	62, 219, 748, 1274, 1771, 1867, 1895, 2456
Bbv12I	GWGCWC	5 cut(s)	260, 342, 1797, 2776, 2859
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	8 cut(s)	174, 385, 514, 968, 1152, 1423, 1451, 1668
BccI	CCATC	5 cut(s)	24, 158, 854, 1485, 2210
BceAI	ACGGC	2 cut(s)	226, 661
BcgI	CGANNNNNNTGC	2 cut(s)	1195, 1229
BciT130I	CCWGG	2 cut(s)	16, 1381
BclI	TGATCA	3 cut(s)	183, 963, 2539
BcnI	CCSGG	8 cut(s)	50, 84, 85, 454, 551, 1926, 2055, 2234
BcoDI	GTCTC	5 cut(s)	730, 795, 1013, 1171, 1301
BcuI	ACTAGT	1 cut(s)	2576
BfaI	CTAG	5 cut(s)	62, 128, 2481, 2577, 2673
BfmI	CTRYAG	2 cut(s)	1054, 1437
BfrI	CTTAAG	3 cut(s)	1087, 1808, 2111
BglII	AGATCT	2 cut(s)	828, 2533
BlpI	GCTNAGC	1 cut(s)	510
Bme18I	GGWCC	4 cut(s)	46, 522, 2219, 2623
BmeT110I	CYCGRG	3 cut(s)	83, 232, 1385
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	8 cut(s)	33, 46, 522, 544, 730, 1590, 2219, 2623
BmrI	ACTGGG	1 cut(s)	1957
BmsI	GCATC	6 cut(s)	392, 589, 712, 2038, 2550, 2587
BmuI	ACTGGG	1 cut(s)	1957
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	8 cut(s)	62, 219, 748, 1274, 1771, 1867, 1895, 2456
BplI	GAGNNNNNCTC	6 cut(s)	83, 115, 1767, 1799, 2477, 2509
Bpu10I	CCTNAGC	5 cut(s)	353, 1370, 2069, 2146, 2168
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	8 cut(s)	50, 84, 85, 454, 551, 1926, 2055, 2234
BsaAI	YACGTR	3 cut(s)	1044, 1227, 1573
BsaBI	GATNNNNATC	1 cut(s)	2538
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	2 cut(s)	795, 1013
BsaWI	WCCGGW	4 cut(s)	530, 1342, 1878, 2247
BsaXI	ACNNNNNCTCC	6 cut(s)	2035, 2065, 2395, 2425, 2763, 2793
Bsc4I	CCNNNNNNNGG	8 cut(s)	354, 967, 1365, 1386, 1698, 2150, 2151, 2170
Bse118I	RCCGGY	2 cut(s)	172, 1342
Bse1I	ACTGG	9 cut(s)	76, 1175, 1609, 1711, 1838, 1963, 2102, 2708, 2777
Bse3DI	GCAATG	3 cut(s)	595, 1431, 1940
Bse8I	GATNNNNATC	1 cut(s)	2538
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	2 cut(s)	16, 1381
BseGI	GGATG	5 cut(s)	10, 604, 1827, 2029, 2079
BseJI	GATNNNNATC	1 cut(s)	2538
BseLI	CCNNNNNNNGG	8 cut(s)	354, 967, 1365, 1386, 1698, 2150, 2151, 2170
BseMI	GCAATG	3 cut(s)	595, 1431, 1940
BseNI	ACTGG	9 cut(s)	76, 1175, 1609, 1711, 1838, 1963, 2102, 2708, 2777
BseRI	GAGGAG	7 cut(s)	122, 219, 456, 459, 462, 511, 1544
BseSI	GKGCMC	3 cut(s)	1797, 2006, 2233
BseXI	GCAGC	8 cut(s)	174, 385, 514, 968, 1152, 1423, 1451, 1668
BseYI	CCCAGC	4 cut(s)	727, 1469, 2005, 2150
Bsh1236I	CGCG	2 cut(s)	388, 660
Bsh1285I	CGRYCG	1 cut(s)	520
BshNI	GGYRCC	2 cut(s)	1803, 2228
BshTI	ACCGGT	1 cut(s)	1342
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	5 cut(s)	260, 342, 1797, 2776, 2859
BsiHKCI	CYCGRG	3 cut(s)	83, 232, 1385
BslFI	GGGAC	4 cut(s)	32, 64, 100, 567
BslI	CCNNNNNNNGG	8 cut(s)	354, 967, 1365, 1386, 1698, 2150, 2151, 2170
BsmAI	GTCTC	5 cut(s)	730, 795, 1013, 1171, 1301
BsmBI	CGTCTC	2 cut(s)	730, 1301
BsmFI	GGGAC	4 cut(s)	32, 64, 100, 567
Bso31I	GGTCTC	2 cut(s)	795, 1013
BsoBI	CYCGRG	3 cut(s)	83, 232, 1385
Bsp119I	TTCGAA	1 cut(s)	695
Bsp13I	TCCGGA	1 cut(s)	530
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	2 cut(s)	373, 2619
Bsp68I	TCGCGA	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	530
BspFNI	CGCG	2 cut(s)	388, 660
BspMAI	CTGCAG	1 cut(s)	1441
BspPI	GGATC	2 cut(s)	974, 987
BspT104I	TTCGAA	1 cut(s)	695
BspT107I	GGYRCC	2 cut(s)	1803, 2228
BspTI	CTTAAG	3 cut(s)	1087, 1808, 2111
BspTNI	GGTCTC	2 cut(s)	795, 1013
BsrBI	CCGCTC	2 cut(s)	459, 528
BsrDI	GCAATG	3 cut(s)	595, 1431, 1940
BsrFI	RCCGGY	2 cut(s)	172, 1342
BsrI	ACTGG	9 cut(s)	76, 1175, 1609, 1711, 1838, 1963, 2102, 2708, 2777
BssAI	RCCGGY	2 cut(s)	172, 1342
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	364
BssT1I	CCWWGG	5 cut(s)	315, 373, 1102, 1293, 2619
Bst2BI	CACGAG	1 cut(s)	364
Bst2UI	CCWGG	2 cut(s)	16, 1381
Bst4CI	ACNGT	5 cut(s)	181, 717, 1280, 1897, 1986
Bst6I	CTCTTC	3 cut(s)	966, 1169, 2150
BstACI	GRCGYC	1 cut(s)	224
BstAFI	CTTAAG	3 cut(s)	1087, 1808, 2111
BstAPI	GCANNNNNTGC	2 cut(s)	1146, 2805
BstBAI	YACGTR	3 cut(s)	1044, 1227, 1573
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	6 cut(s)	174, 396, 507, 636, 2165, 2801
BstDSI	CCRYGG	3 cut(s)	373, 1771, 2619
BstENI	CCTNNNNNAGG	1 cut(s)	1696
BstF5I	GGATG	5 cut(s)	10, 604, 1827, 2029, 2079
BstFNI	CGCG	2 cut(s)	388, 660
BstHHI	GCGC	3 cut(s)	538, 662, 727
BstMAI	GTCTC	5 cut(s)	730, 795, 1013, 1171, 1301
BstMCI	CGRYCG	1 cut(s)	520
BstNI	CCWGG	2 cut(s)	16, 1381
BstNSI	RCATGY	1 cut(s)	1993
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	1054, 1437
BstSLI	GKGCMC	3 cut(s)	1797, 2006, 2233
BstSNI	TACGTA	1 cut(s)	1573
BstUI	CGCG	2 cut(s)	388, 660
BstV1I	GCAGC	8 cut(s)	174, 385, 514, 968, 1152, 1423, 1451, 1668
BstV2I	GAAGAC	8 cut(s)	62, 219, 748, 1274, 1771, 1867, 1895, 2456
BstX2I	RGATCY	3 cut(s)	828, 979, 2533
BstYI	RGATCY	3 cut(s)	828, 979, 2533
BtgI	CCRYGG	3 cut(s)	373, 1771, 2619
BtgZI	GCGATG	2 cut(s)	369, 2610
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	5 cut(s)	10, 604, 1827, 2029, 2079
BtsIMutI	CAGTG	5 cut(s)	69, 1064, 1704, 2006, 2444
BtuMI	TCGCGA	1 cut(s)	388
Cac8I	GCNNGC	6 cut(s)	174, 396, 507, 636, 2165, 2801
CaiI	CAGNNNCTG	2 cut(s)	295, 573
CfoI	GCGC	3 cut(s)	538, 662, 727
Cfr10I	RCCGGY	2 cut(s)	172, 1342
Cfr13I	GGNCC	8 cut(s)	33, 46, 522, 544, 730, 1590, 2219, 2623
Cfr9I	CCCGGG	1 cut(s)	83
CseI	GACGC	4 cut(s)	67, 133, 154, 213
Csp6I	GTAC	7 cut(s)	1045, 1243, 1276, 1804, 1987, 2403, 2815
CspAI	ACCGGT	1 cut(s)	1342
CviQI	GTAC	7 cut(s)	1045, 1243, 1276, 1804, 1987, 2403, 2815
DraI	TTTAAA	1 cut(s)	1969
EaeI	YGGCCR	2 cut(s)	312, 2784
Eam1104I	CTCTTC	3 cut(s)	966, 1169, 2150
EarI	CTCTTC	3 cut(s)	966, 1169, 2150
EciI	GGCGGA	4 cut(s)	119, 268, 453, 1681
Ecl136II	GAGCTC	2 cut(s)	258, 340
Eco105I	TACGTA	1 cut(s)	1573
Eco130I	CCWWGG	5 cut(s)	315, 373, 1102, 1293, 2619
Eco147I	AGGCCT	2 cut(s)	1107, 2698
Eco24I	GRGCYC	5 cut(s)	10, 260, 342, 493, 511
Eco31I	GGTCTC	2 cut(s)	795, 1013
Eco47I	GGWCC	4 cut(s)	46, 522, 2219, 2623
Eco53kI	GAGCTC	2 cut(s)	258, 340
Eco57I	CTGAAG	3 cut(s)	809, 1928, 2468
Eco88I	CYCGRG	3 cut(s)	83, 232, 1385
EcoICRI	GAGCTC	2 cut(s)	258, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	1696
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRI	GAATTC	2 cut(s)	1863, 2843
EcoRII	CCWGG	2 cut(s)	14, 1379
EcoT14I	CCWWGG	5 cut(s)	315, 373, 1102, 1293, 2619
EcoT22I	ATGCAT	5 cut(s)	385, 604, 680, 1628, 1720
EcoT38I	GRGCYC	5 cut(s)	10, 260, 342, 493, 511
ErhI	CCWWGG	5 cut(s)	315, 373, 1102, 1293, 2619
Esp3I	CGTCTC	2 cut(s)	730, 1301
FalI	AAGNNNNNCTT	3 cut(s)	759, 791, 2843
FaqI	GGGAC	4 cut(s)	32, 64, 100, 567
FauI	CCCGC	2 cut(s)	498, 533
FbaI	TGATCA	3 cut(s)	183, 963, 2539
FblI	GTMKAC	2 cut(s)	95, 846
FokI	GGATG	4 cut(s)	611, 1834, 2016, 2066
FriOI	GRGCYC	5 cut(s)	10, 260, 342, 493, 511
FspBI	CTAG	5 cut(s)	62, 128, 2481, 2577, 2673
GlaI	GCGC	3 cut(s)	537, 661, 726
GsaI	CCCAGC	4 cut(s)	731, 1473, 2009, 2154
HgaI	GACGC	4 cut(s)	67, 133, 154, 213
HhaI	GCGC	3 cut(s)	538, 662, 727
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	3 cut(s)	536, 660, 725
HinP1I	GCGC	3 cut(s)	536, 660, 725
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	2 cut(s)	2204, 2801
HphI	GGTGA	7 cut(s)	133, 193, 1279, 1868, 2069, 2105, 2608
Hpy166II	GTNNAC	5 cut(s)	96, 847, 1795, 1982, 2077
Hpy8I	GTNNAC	5 cut(s)	96, 847, 1795, 1982, 2077
Hpy99I	CGWCG	6 cut(s)	119, 170, 181, 203, 247, 1397
HpyAV	CCTTC	8 cut(s)	535, 691, 928, 1107, 1589, 1702, 1903, 2585
HpyCH4III	ACNGT	5 cut(s)	181, 717, 1280, 1897, 1986
HpyCH4IV	ACGT	5 cut(s)	77, 1043, 1226, 1310, 1572
HpySE526I	ACGT	5 cut(s)	77, 1043, 1226, 1310, 1572
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	3 cut(s)	536, 660, 725
Kpn2I	TCCGGA	1 cut(s)	530
KpnI	GGTACC	1 cut(s)	1807
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	3 cut(s)	183, 963, 2539
Lsp1109I	GCAGC	8 cut(s)	174, 385, 514, 968, 1152, 1423, 1451, 1668
LweI	GCATC	6 cut(s)	392, 589, 712, 2038, 2550, 2587
MaeI	CTAG	5 cut(s)	62, 128, 2481, 2577, 2673
MaeII	ACGT	5 cut(s)	77, 1043, 1226, 1310, 1572
MaeIII	GTNAC	6 cut(s)	121, 1338, 1600, 1709, 2093, 2476
MbiI	CCGCTC	2 cut(s)	459, 528
MfeI	CAATTG	2 cut(s)	1013, 1798
MflI	RGATCY	3 cut(s)	828, 979, 2533
MlsI	TGGCCA	2 cut(s)	314, 2786
MluNI	TGGCCA	2 cut(s)	314, 2786
MlyI	GAGTC	6 cut(s)	35, 101, 464, 1173, 1785, 1881
MmeI	TCCRAC	2 cut(s)	288, 957
Mox20I	TGGCCA	2 cut(s)	314, 2786
Mph1103I	ATGCAT	5 cut(s)	385, 604, 680, 1628, 1720
MroI	TCCGGA	1 cut(s)	530
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	1863, 2714
MscI	TGGCCA	2 cut(s)	314, 2786
MseI	TTAA	7 cut(s)	1088, 1584, 1677, 1809, 1968, 2112, 2210
MslI	CAYNNNNRTG	5 cut(s)	378, 683, 2558, 2618, 2742
Msp20I	TGGCCA	2 cut(s)	314, 2786
MspA1I	CMGCKG	2 cut(s)	505, 2009
MspCI	CTTAAG	3 cut(s)	1087, 1808, 2111
MunI	CAATTG	2 cut(s)	1013, 1798
MvaI	CCWGG	2 cut(s)	16, 1381
MvnI	CGCG	2 cut(s)	388, 660
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	8 cut(s)	50, 84, 85, 454, 551, 1926, 2055, 2234
NcoI	CCATGG	2 cut(s)	373, 2619
NgoMIV	GCCGGC	1 cut(s)	172
NmeAIII	GCCGAG	4 cut(s)	80, 235, 373, 452
NmuCI	GTSAC	3 cut(s)	121, 1600, 2093
NruI	TCGCGA	1 cut(s)	388
NsiI	ATGCAT	5 cut(s)	385, 604, 680, 1628, 1720
NspI	RCATGY	1 cut(s)	1993
NspV	TTCGAA	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	2742
PaeR7I	CTCGAG	1 cut(s)	232
PceI	AGGCCT	2 cut(s)	1107, 2698
PciI	ACATGT	1 cut(s)	1989
PcsI	WCGNNNNNNNCGW	6 cut(s)	207, 239, 777, 843, 1392, 1401
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	1863, 2714
PfeI	GAWTC	8 cut(s)	273, 692, 759, 815, 1134, 1517, 2357, 2408
PflFI	GACNNNGTC	3 cut(s)	44, 91, 842
PflMI	CCANNNNNTGG	1 cut(s)	1365
PfoI	TCCNGGA	2 cut(s)	48, 1924
PinAI	ACCGGT	1 cut(s)	1342
Ple19I	CGATCG	1 cut(s)	520
PleI	GAGTC	6 cut(s)	35, 100, 464, 1173, 1784, 1880
PpsI	GAGTC	6 cut(s)	35, 100, 464, 1173, 1784, 1880
Ppu21I	YACGTR	3 cut(s)	1044, 1227, 1573
PscI	ACATGT	1 cut(s)	1989
PshAI	GACNNNNGTC	1 cut(s)	62
PsiI	TTATAA	2 cut(s)	1505, 1613
Psp124BI	GAGCTC	2 cut(s)	260, 342
Psp6I	CCWGG	2 cut(s)	14, 1379
PspFI	CCCAGC	4 cut(s)	727, 1469, 2005, 2150
PspGI	CCWGG	2 cut(s)	14, 1379
PspPI	GGNCC	8 cut(s)	33, 46, 522, 544, 730, 1590, 2219, 2623
PspXI	VCTCGAGB	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	1441
PstNI	CAGNNNCTG	2 cut(s)	295, 573
PsuI	RGATCY	3 cut(s)	828, 979, 2533
PsyI	GACNNNGTC	3 cut(s)	44, 91, 842
PvuI	CGATCG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	2009
RruI	TCGCGA	1 cut(s)	388
RsaI	GTAC	7 cut(s)	1046, 1244, 1277, 1805, 1988, 2404, 2816
RsaNI	GTAC	7 cut(s)	1045, 1243, 1276, 1804, 1987, 2403, 2815
RseI	CAYNNNNRTG	5 cut(s)	378, 683, 2558, 2618, 2742
SacI	GAGCTC	2 cut(s)	260, 342
SalI	GTCGAC	1 cut(s)	845
SaqAI	TTAA	7 cut(s)	1088, 1584, 1677, 1809, 1968, 2112, 2210
Sau96I	GGNCC	8 cut(s)	33, 46, 522, 544, 730, 1590, 2219, 2623
SchI	GAGTC	6 cut(s)	35, 101, 464, 1173, 1785, 1881
SfaNI	GCATC	6 cut(s)	392, 589, 712, 2038, 2550, 2587
SfcI	CTRYAG	2 cut(s)	1054, 1437
Sfr274I	CTCGAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	695
SinI	GGWCC	4 cut(s)	46, 522, 2219, 2623
SlaI	CTCGAG	1 cut(s)	232
SmaI	CCCGGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	5 cut(s)	378, 683, 2558, 2618, 2742
SmlI	CTYRAG	5 cut(s)	232, 341, 1087, 1808, 2111
SmoI	CTYRAG	5 cut(s)	232, 341, 1087, 1808, 2111
SnaBI	TACGTA	1 cut(s)	1573
SpeI	ACTAGT	1 cut(s)	2576
SseBI	AGGCCT	2 cut(s)	1107, 2698
SspI	AATATT	2 cut(s)	190, 2332
SspMI	CTAG	5 cut(s)	62, 128, 2481, 2577, 2673
SstI	GAGCTC	2 cut(s)	260, 342
StuI	AGGCCT	2 cut(s)	1107, 2698
StyI	CCWWGG	5 cut(s)	315, 373, 1102, 1293, 2619
TaaI	ACNGT	5 cut(s)	181, 717, 1280, 1897, 1986
TaiI	ACGT	5 cut(s)	80, 1046, 1229, 1313, 1575
TaqII	GACCGA	1 cut(s)	34
TatI	WGTACW	4 cut(s)	1242, 1986, 2402, 2814
TauI	GCSGC	2 cut(s)	485, 1304
TfiI	GAWTC	8 cut(s)	273, 692, 759, 815, 1134, 1517, 2357, 2408
Tru1I	TTAA	7 cut(s)	1088, 1584, 1677, 1809, 1968, 2112, 2210
Tru9I	TTAA	7 cut(s)	1088, 1584, 1677, 1809, 1968, 2112, 2210
TscAI	CASTG	5 cut(s)	76, 1071, 1711, 2006, 2451
TseFI	GTSAC	3 cut(s)	121, 1600, 2093
TseI	GCWGC	8 cut(s)	162, 398, 502, 956, 1140, 1436, 1439, 1681
Tsp45I	GTSAC	3 cut(s)	121, 1600, 2093
TspDTI	ATGAA	8 cut(s)	553, 701, 870, 1253, 2193, 2290, 2534, 2538
TspGWI	ACGGA	6 cut(s)	216, 1788, 1822, 1889, 2022, 2072
TspMI	CCCGGG	1 cut(s)	83
TspRI	CASTG	5 cut(s)	76, 1071, 1711, 2006, 2451
Tth111I	GACNNNGTC	3 cut(s)	44, 91, 842
Van91I	CCANNNNNTGG	1 cut(s)	1365
Vha464I	CTTAAG	3 cut(s)	1087, 1808, 2111
VneI	GTGCAC	1 cut(s)	1793
VpaK11BI	GGWCC	4 cut(s)	46, 522, 2219, 2623
XagI	CCTNNNNNAGG	1 cut(s)	1696
XapI	RAATTY	6 cut(s)	795, 1863, 2380, 2723, 2837, 2843
XceI	RCATGY	1 cut(s)	1993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2645
XhoI	CTCGAG	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	83
XmiI	GTMKAC	2 cut(s)	95, 846
XmnI	GAANNNNTTC	2 cut(s)	1863, 2714
XspI	CTAG	5 cut(s)	62, 128, 2481, 2577, 2673
Zsp2I	ATGCAT	5 cut(s)	385, 604, 680, 1628, 1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.