Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009819

Physical Location & Seq

Genomic Coordinates Reverse (-)

13791801 .. 13799439

Gene Structure 7639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGAGGGCTCATCCCAGGCACGAACGCCGATGGGCCTCGGACTCAGTCCCGGAGAAGACGCTAGTCAGCACTGGCACGTCCCCCGGGACTGAGTCTACCTCGGCGGAGGAGTTCGTCGAGGTGACGCTAGATTTGCAGGACGACAACACCATCGTCCTCCGCAGCGTAGAGCCGGCGACGGTGATTAATATTACAGACGATGGAGGAGCCGAGGCTACTCCGGCGTCTTCCTCCAGGTCGCCTTCGATAAGGCGGAGCTCGTCCAATAGCAGAATCCGGCAGTTCTCTCAGGAGCTGAAAGCGGAGGCGGTGGCCAAGGCCAAGCAGTTCTCTCAGGAGCTCAAGGCCGAGCTGAGGCGGTTCTCGTGGAGCCATGGAAATGCGTCGCGGGTGCTGGCTGCTTCTTCGGCGGTTGCTTCTCAGAATGACGGCGGAGGAGGAGCCGGAAGCGGTTATTATGACTCGGCTCTGGAGGCGAGGGCTCTGAGGAGGCAGCGGGCTCAACTCGATCGAACCCGCTCCGGGGCGCAGAAGGCCCTCCGGGGACTGAGGTTCATCAGCAACTGCAAGAACAAGAGCAATGGCGTGGATGCATGGAACGAGGTGGAGAGCAATTTCAACAAGCTCGCCAAAGACGGCAACCTCTACCGCGCCGATTTCGCCCAATGCATAGGAATGAAAGATTCGAAGGAGTTTGCTCTGGAACTGTTCGATGCGCTGGTCCGGAGACGAAGACTAAAGGTGGAGAGAATCAGCAAAGACGAGCTTTACGAGTTTTGGTCGCAAATTTCCGATCAAAGTTTCGATTCAAGGCTTCAGATCTTCTTCGACATGGTCGACAAAAATGAAGACGGGAGAATTACCGAAGAAGAAGTAAAAGAGATCATCATGCTGAGTGCTTGTGCCAACAAGTTATCAAGATTGAAGGAACAAGCAGAGGAATATGCAGCCCTGATCATGGAAGAGTTGGATCCTGAAAGACTTGGCTATATTGAGCTATGGCAATTGGAGACCCTTTTGCTCCAAAAGGACACGTACCTAAACTACAGCCAAGCACTGAGCTACACGAGCCAAGCCTTAAGCCAGAACCTCCAAGGCCTCCGAAGGCGAAGCCCGATACGCAGAATCAGCAGCAAGTGCCTCTACTACTTGCAAGAAAACTGGAAGAGACTCTGGGTTTTGGCACTCTGGGTGTGCATTATGATCGGACTTTTTACGTGGAAGTTCTTTCAGTACAAGCAGAAAAAATCCTTTCATATAATGGGGTACTGTCTTCTCACCGCCAAGGGTGCGGCAGAGACGTTGAAGTTCAACATGGCTCTGGTGCTGTTACCGGTGTGTAGAAACACCATTACTTGGCTCAGGAACACCAGGCTCGGGTTCGTTGTGCCTTTCGATGACAATATCAACTTCCACAAGAGCATTGCTGCAGCCATTGTAATCGGTGTTATTCTCCATGCTGGGAACCATCTTGCGTGTGATTTTCCGAGGCTTATAAAGGTGTCTGAATTAGTCTATGAGGAGTATTTGCATGACGACTTTGGAACGCATAAACCCACATACGTAGATTTAGTTAAAGGGGCCGAAGGAGTGACTGGAATTATAATGGTGGTATGCATGATAATTGCTTTCACACTCGCAACAAAATGGTTCAGGCGGAGCCTCATTAAGCTGCCCAAGCCCTTCAATAGGCTCACTGGTTACAATGCATTTTGGTATTCACATCACTTATTTGTCATCGTCTATGCCTTGCTCGTTATCCACGGAGTCTTCCTCTATCTTGTGCACAAATGGTACCTTAAGACGACTTGGATGTATCTTTCCGTTCCAGTTATACTATATGCTGGTGAAAGAATCCTGAGAGTCTTCCGGTCTGGCTTTTATACTGTCCGTCTTCTGAAGGTTGCTATTTATCCGGGAAATGTTCTCACATTGCAAATGTCTAAGCCACCCCAGTTTAAATACAAAAGTGGACAGTACATGTTTGTTCAGTGCCCGGCTGTTTCCCCTTTTGAGTGGCATCCGTTTTCAATTACATCTGCTCCCGGTGATGACTACCTTAGCGTTCACATCCGTCAGCTTGGTGACTGGACACAAGAGCTTAAGAGGGTTTTCTCAGAAGCCTGTGAGCCTCCCTTAGCTGGGAAGAGTGGCCTGCTAAGGGCTGATGAAACCACCAAGAAAAGTTTGCCCAAGCTTTTAATAGATGGACCTTATGGTGCCCCGGCACAAGACTACCGGAAATATGATGTCCTGCTACTTGTTGGTCTTGGGATTGGGGCGACACCTTTCATTAGTATTTTGAAAGATTTGCTCAACAATATTGTCAAAATGGAGGAACAGGCAGATTCTCCCTCAGATTTCAGTAGAAATTCAGACCTAAGTTCAGGAAGTACAGATTCTCCCAACAAGGTTTATCTGAAAAGAAAAAAGCCACTGAAGACCACCAATGCCTACTTCTATTGGGTAACTAGGGAGCAAGGCTCATTTGATTGGTTCAAAGGAGTGATGAATGAAGTTGCAGATCTTGATCAAAGGGGTGTCATTGAGATGCACAACTATTTGACTAGTGTGTATGAGGAAGGCGATGCTCGATCAACACTCATCACCATGGTCCAAGCTCTCAACCATGCTAAGAATGGGGTTGACATTGTATCTGGCACTAGGGTTCGCACTCATTTTGCAAGGCCTAACTGGAAGAAAGTTTTCTCAAAATTTTCCTCCAAGCACTATGGTGCAAGGATAGGGGTATTCTATTGTGGAGCACCAGTTTTGGCCAAAGAACTCAGCAAGCTTTGCTATGAGTTCAATCAAAAAGGTCTAACCAAATTTGAATTCCACAAGGAGCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

951

Amino Acids

108.34

Weight (kDa)

9.22

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	168 - 270	7.2e-40	Respiratory burst NADPH oxidase
Ferric_reduct	PF01794	439 - 586	4.9e-12	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	628 - 743	1.6e-36	FAD-binding domain
NAD_binding_6	PF08030	749 - 933	1.1e-51	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64060
fragaria_vesca	FvH4_5g03310 FvH4_5g03310 FvH4_5g03310 FvH4_5g03310
malus_domestica	MD06G1093000.v1.1 MD14G1113700.v1.1
prunus_persica	Prupe.5G107400_v2.0.a1
pyrus_communis	pycom06g08880
rosa_chinensis	RchiOBHm_Chr7g0196471
rosa_laevigata	RLG00000004012
rosa_multiflora	Rmu_co8333625.1_g000001 Rmu_sc0000736.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259290
rosa_rugosa	Rorug07G0033600 Rorug07G0033700
rosa_samantha	Rh7AG158000 Rh7BG159900 Rh7CG166400 Rh7DG159200
rosa_wichuraiana	Rw7G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1496, 1604
Acc65I	GGTACC	1 cut(s)	1794
AccB1I	GGYRCC	2 cut(s)	1794, 2219
AccB7I	CCANNNNNTGG	1 cut(s)	1356
AccBSI	CCGCTC	1 cut(s)	519
AccI	GTMKAC	2 cut(s)	95, 837
AccII	CGCG	2 cut(s)	388, 651
AccIII	TCCGGA	1 cut(s)	723
AclWI	GGATC	2 cut(s)	965, 978
AcoI	YGGCCR	2 cut(s)	312, 2775
AcsI	RAATTY	5 cut(s)	786, 2371, 2714, 2828, 2834
AcuI	CTGAAG	3 cut(s)	800, 1919, 2459
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	6 cut(s)	1037, 1235, 1268, 1796, 1979, 2395
AflII	CTTAAG	3 cut(s)	1078, 1799, 2102
AflIII	ACRYGT	2 cut(s)	1032, 1980
AgeI	ACCGGT	1 cut(s)	1333
AhlI	ACTAGT	1 cut(s)	2567
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	3 cut(s)	14, 233, 1370
AjuI	GAANNNNNNNTTGG	4 cut(s)	2441, 2473, 2819, 2851
AleI	CACNNNNGTG	1 cut(s)	2733
Alw21I	GWGCWC	5 cut(s)	260, 342, 1788, 2767, 2850
Alw26I	GTCTC	4 cut(s)	721, 1004, 1162, 1292
Alw44I	GTGCAC	1 cut(s)	1784
AlwI	GGATC	2 cut(s)	965, 978
AlwNI	CAGNNNCTG	2 cut(s)	295, 564
Ama87I	CYCGRG	2 cut(s)	83, 1376
Aor13HI	TCCGGA	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	1784
ApeKI	GCWGC	8 cut(s)	162, 398, 493, 947, 1131, 1427, 1430, 1672
ApoI	RAATTY	5 cut(s)	786, 2371, 2714, 2828, 2834
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AseI	ATTAAT	1 cut(s)	186
AsiGI	ACCGGT	1 cut(s)	1333
Asp700I	GAANNNNTTC	1 cut(s)	2705
Asp718I	GGTACC	1 cut(s)	1794
AspLEI	GCGC	3 cut(s)	529, 653, 718
AspS9I	GGNCC	6 cut(s)	33, 535, 721, 1581, 2210, 2614
AsuC2I	CCSGG	9 cut(s)	50, 84, 85, 523, 542, 1917, 1997, 2046, 2225
AsuHPI	GGTGA	7 cut(s)	133, 193, 1270, 1859, 2060, 2096, 2599
AsuII	TTCGAA	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	83, 1376
AvaII	GGWCC	3 cut(s)	721, 2210, 2614
BaeGI	GKGCMC	3 cut(s)	1788, 1997, 2224
BalI	TGGCCA	2 cut(s)	314, 2777
BamHI	GGATCC	1 cut(s)	970
BanI	GGYRCC	2 cut(s)	1794, 2219
BanII	GRGCYC	5 cut(s)	10, 260, 342, 484, 502
BauI	CACGAG	2 cut(s)	364, 1066
BbsI	GAAGAC	9 cut(s)	62, 219, 739, 855, 1265, 1762, 1858, 1886, 2447
Bbv12I	GWGCWC	5 cut(s)	260, 342, 1788, 2767, 2850
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	8 cut(s)	174, 385, 505, 959, 1143, 1414, 1442, 1659
BccI	CCATC	5 cut(s)	24, 158, 194, 1476, 2201
BceAI	ACGGC	2 cut(s)	445, 652
BcgI	CGANNNNNNTGC	2 cut(s)	1186, 1220
BciT130I	CCWGG	3 cut(s)	16, 235, 1372
BclI	TGATCA	2 cut(s)	954, 2530
BcnI	CCSGG	9 cut(s)	50, 84, 85, 523, 542, 1917, 1997, 2046, 2225
BcoDI	GTCTC	4 cut(s)	721, 1004, 1162, 1292
BcuI	ACTAGT	1 cut(s)	2567
BfaI	CTAG	5 cut(s)	62, 128, 2472, 2568, 2664
BfmI	CTRYAG	2 cut(s)	1045, 1428
BfrI	CTTAAG	3 cut(s)	1078, 1799, 2102
BglII	AGATCT	2 cut(s)	819, 2524
BisI	GCNGC	9 cut(s)	163, 399, 494, 948, 1132, 1293, 1428, 1431, 1673
BlsI	GCNGC	9 cut(s)	164, 400, 495, 949, 1133, 1294, 1429, 1432, 1674
Bme18I	GGWCC	3 cut(s)	721, 2210, 2614
BmeT110I	CYCGRG	2 cut(s)	83, 1376
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	6 cut(s)	33, 535, 721, 1581, 2210, 2614
BmiI	GGNNCC	9 cut(s)	208, 371, 442, 972, 1466, 1582, 1661, 1796, 2221
BmrI	ACTGGG	1 cut(s)	1948
BmsI	GCATC	5 cut(s)	580, 703, 2029, 2541, 2578
BmuI	ACTGGG	1 cut(s)	1948
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	9 cut(s)	62, 219, 739, 855, 1265, 1762, 1858, 1886, 2447
BplI	GAGNNNNNCTC	6 cut(s)	83, 115, 1758, 1790, 2468, 2500
BpmI	CTGGAG	2 cut(s)	217, 491
Bpu10I	CCTNAGC	5 cut(s)	353, 1361, 2060, 2137, 2159
Bpu14I	TTCGAA	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	9 cut(s)	50, 84, 85, 523, 542, 1917, 1997, 2046, 2225
BsaAI	YACGTR	3 cut(s)	1035, 1218, 1564
BsaBI	GATNNNNATC	1 cut(s)	2529
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	1004
BsaWI	WCCGGW	4 cut(s)	723, 1333, 1869, 2238
BsaXI	ACNNNNNCTCC	6 cut(s)	2026, 2056, 2386, 2416, 2754, 2784
Bse118I	RCCGGY	2 cut(s)	172, 1333
Bse1I	ACTGG	9 cut(s)	76, 1166, 1600, 1702, 1829, 1954, 2093, 2699, 2768
Bse3DI	GCAATG	3 cut(s)	586, 1422, 1931
Bse8I	GATNNNNATC	1 cut(s)	2529
BseAI	TCCGGA	1 cut(s)	723
BseBI	CCWGG	3 cut(s)	16, 235, 1372
BseGI	GGATG	5 cut(s)	10, 595, 1818, 2020, 2070
BseJI	GATNNNNATC	1 cut(s)	2529
BseMI	GCAATG	3 cut(s)	586, 1422, 1931
BseNI	ACTGG	9 cut(s)	76, 1166, 1600, 1702, 1829, 1954, 2093, 2699, 2768
BseRI	GAGGAG	6 cut(s)	122, 219, 450, 453, 502, 1535
BseSI	GKGCMC	3 cut(s)	1788, 1997, 2224
BseXI	GCAGC	8 cut(s)	174, 385, 505, 959, 1143, 1414, 1442, 1659
BseYI	CCCAGC	2 cut(s)	1460, 2141
Bsh1236I	CGCG	2 cut(s)	388, 651
Bsh1285I	CGRYCG	1 cut(s)	511
BshNI	GGYRCC	2 cut(s)	1794, 2219
BshTI	ACCGGT	1 cut(s)	1333
BsiEI	CGRYCG	1 cut(s)	511
BsiHKAI	GWGCWC	5 cut(s)	260, 342, 1788, 2767, 2850
BsiHKCI	CYCGRG	2 cut(s)	83, 1376
BslFI	GGGAC	4 cut(s)	32, 64, 100, 558
BsmAI	GTCTC	4 cut(s)	721, 1004, 1162, 1292
BsmBI	CGTCTC	2 cut(s)	721, 1292
BsmFI	GGGAC	4 cut(s)	32, 64, 100, 558
Bso31I	GGTCTC	1 cut(s)	1004
BsoBI	CYCGRG	2 cut(s)	83, 1376
Bsp119I	TTCGAA	1 cut(s)	686
Bsp13I	TCCGGA	1 cut(s)	723
Bsp19I	CCATGG	2 cut(s)	373, 2610
BspEI	TCCGGA	1 cut(s)	723
BspFNI	CGCG	2 cut(s)	388, 651
BspLI	GGNNCC	9 cut(s)	208, 371, 442, 972, 1466, 1582, 1661, 1796, 2221
BspMAI	CTGCAG	1 cut(s)	1432
BspPI	GGATC	2 cut(s)	965, 978
BspT104I	TTCGAA	1 cut(s)	686
BspT107I	GGYRCC	2 cut(s)	1794, 2219
BspTI	CTTAAG	3 cut(s)	1078, 1799, 2102
BspTNI	GGTCTC	1 cut(s)	1004
BsrBI	CCGCTC	1 cut(s)	519
BsrDI	GCAATG	3 cut(s)	586, 1422, 1931
BsrFI	RCCGGY	2 cut(s)	172, 1333
BsrI	ACTGG	9 cut(s)	76, 1166, 1600, 1702, 1829, 1954, 2093, 2699, 2768
BssAI	RCCGGY	2 cut(s)	172, 1333
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	2 cut(s)	364, 1066
BssT1I	CCWWGG	5 cut(s)	315, 373, 1093, 1284, 2610
Bst2BI	CACGAG	2 cut(s)	364, 1066
Bst2UI	CCWGG	3 cut(s)	16, 235, 1372
Bst4CI	ACNGT	5 cut(s)	181, 708, 1271, 1888, 1977
Bst6I	CTCTTC	3 cut(s)	957, 1160, 2141
BstACI	GRCGYC	1 cut(s)	224
BstAFI	CTTAAG	3 cut(s)	1078, 1799, 2102
BstAPI	GCANNNNNTGC	2 cut(s)	1137, 2796
BstBAI	YACGTR	3 cut(s)	1035, 1218, 1564
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	6 cut(s)	174, 396, 498, 627, 2156, 2792
BstDSI	CCRYGG	3 cut(s)	373, 1762, 2610
BstENI	CCTNNNNNAGG	1 cut(s)	1687
BstF5I	GGATG	5 cut(s)	10, 595, 1818, 2020, 2070
BstFNI	CGCG	2 cut(s)	388, 651
BstHHI	GCGC	3 cut(s)	529, 653, 718
BstMAI	GTCTC	4 cut(s)	721, 1004, 1162, 1292
BstMCI	CGRYCG	1 cut(s)	511
BstNI	CCWGG	3 cut(s)	16, 235, 1372
BstNSI	RCATGY	1 cut(s)	1984
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	1045, 1428
BstSLI	GKGCMC	3 cut(s)	1788, 1997, 2224
BstSNI	TACGTA	1 cut(s)	1564
BstUI	CGCG	2 cut(s)	388, 651
BstV1I	GCAGC	8 cut(s)	174, 385, 505, 959, 1143, 1414, 1442, 1659
BstV2I	GAAGAC	9 cut(s)	62, 219, 739, 855, 1265, 1762, 1858, 1886, 2447
BstX2I	RGATCY	3 cut(s)	819, 970, 2524
BstYI	RGATCY	3 cut(s)	819, 970, 2524
BtgI	CCRYGG	3 cut(s)	373, 1762, 2610
BtgZI	GCGATG	1 cut(s)	2601
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	5 cut(s)	10, 595, 1818, 2020, 2070
BtsIMutI	CAGTG	5 cut(s)	69, 1055, 1695, 1997, 2435
Cac8I	GCNNGC	6 cut(s)	174, 396, 498, 627, 2156, 2792
CaiI	CAGNNNCTG	2 cut(s)	295, 564
CfoI	GCGC	3 cut(s)	529, 653, 718
Cfr10I	RCCGGY	2 cut(s)	172, 1333
Cfr13I	GGNCC	6 cut(s)	33, 535, 721, 1581, 2210, 2614
Cfr9I	CCCGGG	1 cut(s)	83
CseI	GACGC	4 cut(s)	67, 133, 213, 372
Csp6I	GTAC	6 cut(s)	1036, 1234, 1267, 1795, 1978, 2394
CspAI	ACCGGT	1 cut(s)	1333
CviQI	GTAC	6 cut(s)	1036, 1234, 1267, 1795, 1978, 2394
DraI	TTTAAA	1 cut(s)	1960
EaeI	YGGCCR	2 cut(s)	312, 2775
Eam1104I	CTCTTC	3 cut(s)	957, 1160, 2141
EarI	CTCTTC	3 cut(s)	957, 1160, 2141
EciI	GGCGGA	4 cut(s)	119, 268, 447, 1672
Ecl136II	GAGCTC	2 cut(s)	258, 340
Eco105I	TACGTA	1 cut(s)	1564
Eco130I	CCWWGG	5 cut(s)	315, 373, 1093, 1284, 2610
Eco147I	AGGCCT	2 cut(s)	1098, 2689
Eco24I	GRGCYC	5 cut(s)	10, 260, 342, 484, 502
Eco31I	GGTCTC	1 cut(s)	1004
Eco47I	GGWCC	3 cut(s)	721, 2210, 2614
Eco53kI	GAGCTC	2 cut(s)	258, 340
Eco57I	CTGAAG	3 cut(s)	800, 1919, 2459
Eco88I	CYCGRG	2 cut(s)	83, 1376
EcoICRI	GAGCTC	2 cut(s)	258, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	1687
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	2834
EcoRII	CCWGG	3 cut(s)	14, 233, 1370
EcoT14I	CCWWGG	5 cut(s)	315, 373, 1093, 1284, 2610
EcoT22I	ATGCAT	4 cut(s)	595, 671, 1619, 1711
EcoT38I	GRGCYC	5 cut(s)	10, 260, 342, 484, 502
ErhI	CCWWGG	5 cut(s)	315, 373, 1093, 1284, 2610
Esp3I	CGTCTC	2 cut(s)	721, 1292
FalI	AAGNNNNNCTT	3 cut(s)	750, 782, 2834
FaqI	GGGAC	4 cut(s)	32, 64, 100, 558
FauI	CCCGC	3 cut(s)	381, 489, 524
FbaI	TGATCA	2 cut(s)	954, 2530
FblI	GTMKAC	2 cut(s)	95, 837
Fnu4HI	GCNGC	9 cut(s)	163, 399, 494, 948, 1132, 1293, 1428, 1431, 1673
FokI	GGATG	4 cut(s)	602, 1825, 2007, 2057
FriOI	GRGCYC	5 cut(s)	10, 260, 342, 484, 502
Fsp4HI	GCNGC	9 cut(s)	163, 399, 494, 948, 1132, 1293, 1428, 1431, 1673
FspBI	CTAG	5 cut(s)	62, 128, 2472, 2568, 2664
GlaI	GCGC	3 cut(s)	528, 652, 717
GluI	GCNGC	9 cut(s)	163, 399, 494, 948, 1132, 1293, 1428, 1431, 1673
GsaI	CCCAGC	2 cut(s)	1464, 2145
GsuI	CTGGAG	2 cut(s)	217, 491
HgaI	GACGC	4 cut(s)	67, 133, 213, 372
HhaI	GCGC	3 cut(s)	529, 653, 718
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	3 cut(s)	527, 651, 716
HinP1I	GCGC	3 cut(s)	527, 651, 716
HincII	GTYRAC	2 cut(s)	838, 2647
HindII	GTYRAC	2 cut(s)	838, 2647
HindIII	AAGCTT	2 cut(s)	2195, 2792
HphI	GGTGA	7 cut(s)	133, 193, 1270, 1859, 2060, 2096, 2599
Hpy166II	GTNNAC	6 cut(s)	96, 838, 1786, 1973, 2068, 2647
Hpy8I	GTNNAC	6 cut(s)	96, 838, 1786, 1973, 2068, 2647
Hpy99I	CGWCG	3 cut(s)	119, 181, 388
HpyAV	CCTTC	9 cut(s)	252, 526, 682, 919, 1098, 1580, 1693, 1894, 2576
HpyCH4III	ACNGT	5 cut(s)	181, 708, 1271, 1888, 1977
HpyCH4IV	ACGT	5 cut(s)	77, 1034, 1217, 1301, 1563
HpySE526I	ACGT	5 cut(s)	77, 1034, 1217, 1301, 1563
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	3 cut(s)	527, 651, 716
Kpn2I	TCCGGA	1 cut(s)	723
KpnI	GGTACC	1 cut(s)	1798
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	954, 2530
Lsp1109I	GCAGC	8 cut(s)	174, 385, 505, 959, 1143, 1414, 1442, 1659
LweI	GCATC	5 cut(s)	580, 703, 2029, 2541, 2578
MaeI	CTAG	5 cut(s)	62, 128, 2472, 2568, 2664
MaeII	ACGT	5 cut(s)	77, 1034, 1217, 1301, 1563
MaeIII	GTNAC	6 cut(s)	121, 1329, 1591, 1700, 2084, 2467
MbiI	CCGCTC	1 cut(s)	519
MfeI	CAATTG	1 cut(s)	1004
MflI	RGATCY	3 cut(s)	819, 970, 2524
MlsI	TGGCCA	2 cut(s)	314, 2777
MluNI	TGGCCA	2 cut(s)	314, 2777
MlyI	GAGTC	6 cut(s)	35, 101, 455, 1164, 1776, 1872
MmeI	TCCRAC	1 cut(s)	948
Mox20I	TGGCCA	2 cut(s)	314, 2777
Mph1103I	ATGCAT	4 cut(s)	595, 671, 1619, 1711
MroI	TCCGGA	1 cut(s)	723
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	2705
MscI	TGGCCA	2 cut(s)	314, 2777
MseI	TTAA	8 cut(s)	186, 1079, 1575, 1668, 1800, 1959, 2103, 2201
MslI	CAYNNNNRTG	5 cut(s)	378, 674, 2549, 2609, 2733
Msp20I	TGGCCA	2 cut(s)	314, 2777
MspA1I	CMGCKG	1 cut(s)	496
MspCI	CTTAAG	3 cut(s)	1078, 1799, 2102
MunI	CAATTG	1 cut(s)	1004
MvaI	CCWGG	3 cut(s)	16, 235, 1372
MvnI	CGCG	2 cut(s)	388, 651
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	9 cut(s)	50, 84, 85, 523, 542, 1917, 1997, 2046, 2225
NcoI	CCATGG	2 cut(s)	373, 2610
NgoMIV	GCCGGC	1 cut(s)	172
NlaIV	GGNNCC	9 cut(s)	208, 371, 442, 972, 1466, 1582, 1661, 1796, 2221
NmeAIII	GCCGAG	4 cut(s)	80, 235, 373, 443
NmuCI	GTSAC	3 cut(s)	121, 1591, 2084
NsiI	ATGCAT	4 cut(s)	595, 671, 1619, 1711
NspI	RCATGY	1 cut(s)	1984
NspV	TTCGAA	1 cut(s)	686
OliI	CACNNNNGTG	1 cut(s)	2733
PceI	AGGCCT	2 cut(s)	1098, 2689
PciI	ACATGT	1 cut(s)	1980
PcsI	WCGNNNNNNNCGW	2 cut(s)	768, 834
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	2705
PfeI	GAWTC	8 cut(s)	273, 683, 750, 806, 1125, 1854, 2348, 2399
PflFI	GACNNNGTC	3 cut(s)	44, 91, 833
PflMI	CCANNNNNTGG	1 cut(s)	1356
PfoI	TCCNGGA	2 cut(s)	48, 1915
PinAI	ACCGGT	1 cut(s)	1333
PkrI	GCNGC	9 cut(s)	164, 400, 495, 949, 1133, 1294, 1429, 1432, 1674
Ple19I	CGATCG	1 cut(s)	511
PleI	GAGTC	6 cut(s)	35, 100, 455, 1164, 1775, 1871
PpsI	GAGTC	6 cut(s)	35, 100, 455, 1164, 1775, 1871
Ppu21I	YACGTR	3 cut(s)	1035, 1218, 1564
PscI	ACATGT	1 cut(s)	1980
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	2 cut(s)	1496, 1604
Psp124BI	GAGCTC	2 cut(s)	260, 342
Psp6I	CCWGG	3 cut(s)	14, 233, 1370
PspFI	CCCAGC	2 cut(s)	1460, 2141
PspGI	CCWGG	3 cut(s)	14, 233, 1370
PspN4I	GGNNCC	9 cut(s)	208, 371, 442, 972, 1466, 1582, 1661, 1796, 2221
PspPI	GGNCC	6 cut(s)	33, 535, 721, 1581, 2210, 2614
PstI	CTGCAG	1 cut(s)	1432
PstNI	CAGNNNCTG	2 cut(s)	295, 564
PsuI	RGATCY	3 cut(s)	819, 970, 2524
PsyI	GACNNNGTC	3 cut(s)	44, 91, 833
PvuI	CGATCG	1 cut(s)	511
RsaI	GTAC	6 cut(s)	1037, 1235, 1268, 1796, 1979, 2395
RsaNI	GTAC	6 cut(s)	1036, 1234, 1267, 1795, 1978, 2394
RseI	CAYNNNNRTG	5 cut(s)	378, 674, 2549, 2609, 2733
SacI	GAGCTC	2 cut(s)	260, 342
SalI	GTCGAC	1 cut(s)	836
SaqAI	TTAA	8 cut(s)	186, 1079, 1575, 1668, 1800, 1959, 2103, 2201
SatI	GCNGC	9 cut(s)	163, 399, 494, 948, 1132, 1293, 1428, 1431, 1673
Sau96I	GGNCC	6 cut(s)	33, 535, 721, 1581, 2210, 2614
SchI	GAGTC	6 cut(s)	35, 101, 455, 1164, 1776, 1872
SfaNI	GCATC	5 cut(s)	580, 703, 2029, 2541, 2578
SfcI	CTRYAG	2 cut(s)	1045, 1428
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	3 cut(s)	721, 2210, 2614
SmaI	CCCGGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	5 cut(s)	378, 674, 2549, 2609, 2733
SmlI	CTYRAG	4 cut(s)	341, 1078, 1799, 2102
SmoI	CTYRAG	4 cut(s)	341, 1078, 1799, 2102
SnaBI	TACGTA	1 cut(s)	1564
SpeI	ACTAGT	1 cut(s)	2567
SseBI	AGGCCT	2 cut(s)	1098, 2689
SspI	AATATT	2 cut(s)	190, 2323
SspMI	CTAG	5 cut(s)	62, 128, 2472, 2568, 2664
SstI	GAGCTC	2 cut(s)	260, 342
StuI	AGGCCT	2 cut(s)	1098, 2689
StyI	CCWWGG	5 cut(s)	315, 373, 1093, 1284, 2610
TaaI	ACNGT	5 cut(s)	181, 708, 1271, 1888, 1977
TaiI	ACGT	5 cut(s)	80, 1037, 1220, 1304, 1566
TatI	WGTACW	3 cut(s)	1233, 1977, 2393
TauI	GCSGC	1 cut(s)	1295
TfiI	GAWTC	8 cut(s)	273, 683, 750, 806, 1125, 1854, 2348, 2399
Tru1I	TTAA	8 cut(s)	186, 1079, 1575, 1668, 1800, 1959, 2103, 2201
Tru9I	TTAA	8 cut(s)	186, 1079, 1575, 1668, 1800, 1959, 2103, 2201
TscAI	CASTG	5 cut(s)	76, 1062, 1702, 1997, 2442
TseFI	GTSAC	3 cut(s)	121, 1591, 2084
TseI	GCWGC	8 cut(s)	162, 398, 493, 947, 1131, 1427, 1430, 1672
Tsp45I	GTSAC	3 cut(s)	121, 1591, 2084
TspDTI	ATGAA	8 cut(s)	544, 692, 861, 1244, 2184, 2281, 2525, 2529
TspGWI	ACGGA	5 cut(s)	1779, 1813, 1880, 2013, 2063
TspMI	CCCGGG	1 cut(s)	83
TspRI	CASTG	5 cut(s)	76, 1062, 1702, 1997, 2442
Tth111I	GACNNNGTC	3 cut(s)	44, 91, 833
Van91I	CCANNNNNTGG	1 cut(s)	1356
Vha464I	CTTAAG	3 cut(s)	1078, 1799, 2102
VneI	GTGCAC	1 cut(s)	1784
VpaK11BI	GGWCC	3 cut(s)	721, 2210, 2614
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	1687
XapI	RAATTY	5 cut(s)	786, 2371, 2714, 2828, 2834
XceI	RCATGY	1 cut(s)	1984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2636
XmaI	CCCGGG	1 cut(s)	83
XmiI	GTMKAC	2 cut(s)	95, 837
XmnI	GAANNNNTTC	1 cut(s)	2705
XspI	CTAG	5 cut(s)	62, 128, 2472, 2568, 2664
Zsp2I	ATGCAT	4 cut(s)	595, 671, 1619, 1711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.