Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009819

Physical Location & Seq

Genomic Coordinates Reverse (-)

14084331 .. 14091992

Gene Structure 7662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGAGGGCTCATCCCAGGCACGAACGCCGATGGGCCTCAGACTCGGTCCCGGAGAAGACGCTAGTCAGCACTGGCACGTCCCCTGGGACTGAGTCTACCTCGGCGGAGGAGTTCGTCGAGGTGACGCTAGATTTGCAGGACGACAACACCATCGTCCTTCGCAGCGTCGAGCCGGCGACTGTGATTAATATTACAGACGACGGAGGAGCCGAGGCTACTCCGGCGTCTTCCTCTAGGTCGCCGTCGATAAGGCGGAGCTCGTCCAACAGCAGAATCCGGCAGTTCTCTCAGGAGCTGAAAGCGGAGGCGGTGGCCAAGGCCAAGCAGTTCTCTCAGGAGCTCAAGGCCGAGCTGAGGCGGTTCTCGTGGAGCCATGGAAATGCGTCGCGGGTGCTGGCGGCTTCTTCGGCGGTTGCTTCTCAGAATGACGGCGGAAGCGGAGGAGGAGCCGGGAGCGGTTATTATGACTCGGCTCTTGCGGCGAGGGCTCTGAGGAGGCAGCGGGCTCAGCTCGATCGAACCCGCTCCGGAGCGCAGAAGGCCCTCCGGGGACTGAGGTTCATCAGCAACTGCAAGAACAAGAGCAATGGCGTGGATGCATGGAACGAGGTGGAGAGCAATTTCAACAAGCTCGCCAAAGACGGCAACCTCTACCGCGCCGATTTCGCCCAATGCATAGGAATGAAAGATTCGAAGGAGTTTGCTCTGGAACTGTTCGATGCGCTGGGCCGGAGACGAAGACTAAAGGTGGAGAGACTCAGCAAAGACGAGCTTTACGAGTTTTGGTCGCAAATTTCCGATCAAAGTTTCGATTCAAGGCTTCAGATCTTCTTCGACATGGTCGACAAAAATGAAGACGGAAGAATTACCGAAGAAGAAGTAAAAGAGATCATCATGCTGAGTGCTTGTGCCAACAAGTTATCAAGATTGAAGGAACAAGCAGAGGAATATGCAGCCCTGATCATGGAAGAGTTGGATCCTGAAAGACTTGGCTATATTGAGCTATGGCAATTGGAGACCCTTTTGCTCCAAAAGGACACGTACCTAAACTACAGCCAAGCACTGAGCTACACGAGCCAAGCCTTAAGCCAGAACCTCCAAGGCCTCCGAAGGCGAAGCCCGATACGCAGAATCAGCAGCAAGTGCCTCTACTACTTGCAAGAAAACTGGAAGAGACTCTGGGTTTTGGCACTCTGGGTGTGCATTATGATCGGACTTTTTACGTGGAAGTTCTTTCAGTACAAGCAGAAAAAATCCTTTCATATAATGGGGTACTGTCTTCTCACCGCCAAGGGTGCGGCAGAGACGTTGAAGTTCAACATGGCTCTGGTGCTGTTACCGGTGTGTAGAAACACCATTACTTGGCTCAGGAACACCAGGCTCGGGTTCGTTGTGCCTTTCGATGACAATATCAACTTCCACAAGAGCATTGCTGCAGCCATTGTAATCGGTGTTATTCTCCATGCTGGGAACCATCTTGCGTGTGATTTTCCGAGGCTTATAAAGGTGTCTGAATTAGTCTATGAGGAGTATTTGCATGACGACTTTGGAACGCATAAACCCACATACGTAGATTTAGTTAAAGGGGCCGAAGGAGTGACTGGAATTATAATGGTGGTATGCATGGTAATTGCTTTCACACTCGCAACAAAATGGTTCAGGCGGAGCCTCATTAAGCTGCCCAAGCCCTTCAATAGGCTCACTGGTTACAATGCATTTTGGTATTCACATCACTTATTTGTCATCGTCTATGCCTTGCTCGTTATCCACGGAGTCTTCCTCTATCTTGTGCACAAATGGTACCTTAAGACGACTTGGATGTATCTTTCCGTTCCAGTTATACTATATGCTGGTGAAAGAATACTGAGAGTCTTCCGGTCTGGCTTTTATACTGTCCGTCTTCTGAAGGTTGCTATTTATCCGGGAAATGTTCTCACATTGCAAATGTCTAAGCCACCCCAGTTTAAATACAAAAGTGGACAGTACATGTTTGTTCAGTGCCCGGCTGTTTCCCCTTTTGAGTGGCATCCGTTTTCAATTACATCTGCTCCCGGTGATGACTACCTTAGCGTTCACATCCGTCAGCTTGGTGACTGGACACAAGAGCTTAAGAGGGTTTTCTCAGAAGCCTGTGAGCCTCCCTTAGCTGGGAAGAGTGGCCTGCTAAGGGCTGATGAAACCACCAAGAAAAGTTTGCCCAAGCTTTTAATAGATGGACCTTATGGTGCCCCGGCACAAGACTACCGGAAATATGATGTCCTGCTACTTGTTGGTCTTGGGATTGGGGCGACACCTTTCATTAGTATTTTGAAAGATTTGCTCAACAATATTGTCAAAATGGAGGAACAGGCAGATTCTCCCTCAGATTTCAGTAGAAATTCAGACCTAAGTTCAGGAAGTACAGATTCTCCCAACAAGGTTTATCTGAAAAGAAAAAAGCCACTGAAGACCACCAATGCCTACTTCTATTGGGTAACTAGGGAGCAAGGCTCATTTGATTGGTTCAAAGGAGTGATGAATGAAGTTGCAGATCTTGATCAAAGGGGTGTCATTGAGATGCACAACTATTTGACTAGTGTGTATGAGGAAGGCGATGCTCGATCAACACTCATCACCATGGTCCAAGCTCTCAACCATGCTAAGAATGGGGTTGACATTGTATCTGGCACTAGGGTTCGCACTCATTTTGCAAGGCCTAACTGGAAGAAAGTTTTCTCAAAATTTTCCTCCAAGCACTATGGTGCAAGGATAGGGGTATTCTATTGTGGAGCACCAGTTTTGGCCAAAGAACTCAGCAAGCTTTGCTATGAGTTCAATCAAAAAGGTCTAACCAAATTTGAATTCCACAAGGAGCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

953

Amino Acids

108.37

Weight (kDa)

9.25

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	170 - 272	6.6e-39	Respiratory burst NADPH oxidase
Ferric_reduct	PF01794	441 - 588	4.1e-12	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	630 - 745	1.7e-36	FAD-binding domain
NAD_binding_6	PF08030	751 - 935	1.1e-51	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64060
fragaria_vesca	FvH4_5g03310 FvH4_5g03310 FvH4_5g03310 FvH4_5g03310
malus_domestica	MD06G1093000.v1.1 MD14G1113700.v1.1
prunus_persica	Prupe.5G107400_v2.0.a1
pyrus_communis	pycom06g08880
rosa_chinensis	RchiOBHm_Chr7g0196471
rosa_laevigata	RLG00000004012
rosa_multiflora	Rmu_co8333625.1_g000001 Rmu_sc0000736.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259290
rosa_rugosa	Rorug07G0033600 Rorug07G0033700
rosa_samantha	Rh7AG158000 Rh7BG159900 Rh7CG166400 Rh7DG159200
rosa_wichuraiana	Rw7G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1502, 1610
Acc65I	GGTACC	1 cut(s)	1800
AccB1I	GGYRCC	2 cut(s)	1800, 2225
AccB7I	CCANNNNNTGG	1 cut(s)	1362
AccBSI	CCGCTC	2 cut(s)	456, 525
AccI	GTMKAC	2 cut(s)	95, 843
AccII	CGCG	2 cut(s)	388, 657
AccIII	TCCGGA	1 cut(s)	527
AclWI	GGATC	2 cut(s)	971, 984
AcoI	YGGCCR	2 cut(s)	312, 2781
AcsI	RAATTY	5 cut(s)	792, 2377, 2720, 2834, 2840
AcuI	CTGAAG	3 cut(s)	806, 1925, 2465
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	6 cut(s)	1043, 1241, 1274, 1802, 1985, 2401
AfiI	CCNNNNNNNGG	8 cut(s)	354, 964, 1362, 1383, 1695, 2147, 2148, 2167
AflII	CTTAAG	3 cut(s)	1084, 1805, 2108
AflIII	ACRYGT	2 cut(s)	1038, 1986
AgeI	ACCGGT	1 cut(s)	1339
AhlI	ACTAGT	1 cut(s)	2573
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	3 cut(s)	14, 82, 1376
AjuI	GAANNNNNNNTTGG	4 cut(s)	2447, 2479, 2825, 2857
AleI	CACNNNNGTG	1 cut(s)	2739
Alw21I	GWGCWC	5 cut(s)	260, 342, 1794, 2773, 2856
Alw26I	GTCTC	5 cut(s)	727, 748, 1010, 1168, 1298
Alw44I	GTGCAC	1 cut(s)	1790
AlwI	GGATC	2 cut(s)	971, 984
AlwNI	CAGNNNCTG	2 cut(s)	295, 570
Ama87I	CYCGRG	1 cut(s)	1382
Aor13HI	TCCGGA	1 cut(s)	527
ApaLI	GTGCAC	1 cut(s)	1790
ApeKI	GCWGC	7 cut(s)	162, 499, 953, 1137, 1433, 1436, 1678
ApoI	RAATTY	5 cut(s)	792, 2377, 2720, 2834, 2840
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AseI	ATTAAT	1 cut(s)	186
AsiGI	ACCGGT	1 cut(s)	1339
Asp700I	GAANNNNTTC	1 cut(s)	2711
Asp718I	GGTACC	1 cut(s)	1800
AspLEI	GCGC	3 cut(s)	535, 659, 724
AspS9I	GGNCC	7 cut(s)	33, 46, 541, 727, 1587, 2216, 2620
AsuC2I	CCSGG	7 cut(s)	50, 451, 548, 1923, 2003, 2052, 2231
AsuHPI	GGTGA	6 cut(s)	133, 1276, 1865, 2066, 2102, 2605
AsuII	TTCGAA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	1382
AvaII	GGWCC	3 cut(s)	46, 2216, 2620
BaeGI	GKGCMC	3 cut(s)	1794, 2003, 2230
BalI	TGGCCA	2 cut(s)	314, 2783
BamHI	GGATCC	1 cut(s)	976
BanI	GGYRCC	2 cut(s)	1800, 2225
BanII	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
BauI	CACGAG	2 cut(s)	364, 1072
BbsI	GAAGAC	9 cut(s)	62, 219, 745, 861, 1271, 1768, 1864, 1892, 2453
Bbv12I	GWGCWC	5 cut(s)	260, 342, 1794, 2773, 2856
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	7 cut(s)	174, 511, 965, 1149, 1420, 1448, 1665
BccI	CCATC	4 cut(s)	24, 158, 1482, 2207
BceAI	ACGGC	3 cut(s)	226, 445, 658
BcgI	CGANNNNNNTGC	2 cut(s)	1192, 1226
BciT130I	CCWGG	3 cut(s)	16, 84, 1378
BclI	TGATCA	2 cut(s)	960, 2536
BcnI	CCSGG	7 cut(s)	50, 451, 548, 1923, 2003, 2052, 2231
BcoDI	GTCTC	5 cut(s)	727, 748, 1010, 1168, 1298
BcuI	ACTAGT	1 cut(s)	2573
BfaI	CTAG	6 cut(s)	62, 128, 234, 2478, 2574, 2670
BfmI	CTRYAG	2 cut(s)	1051, 1434
BfrI	CTTAAG	3 cut(s)	1084, 1805, 2108
BglII	AGATCT	2 cut(s)	825, 2530
BlpI	GCTNAGC	1 cut(s)	507
Bme18I	GGWCC	3 cut(s)	46, 2216, 2620
BmeT110I	CYCGRG	1 cut(s)	1382
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	7 cut(s)	33, 46, 541, 727, 1587, 2216, 2620
BmrI	ACTGGG	1 cut(s)	1954
BmsI	GCATC	5 cut(s)	586, 709, 2035, 2547, 2584
BmuI	ACTGGG	1 cut(s)	1954
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	9 cut(s)	62, 219, 745, 861, 1271, 1768, 1864, 1892, 2453
BplI	GAGNNNNNCTC	6 cut(s)	83, 115, 1764, 1796, 2474, 2506
Bpu10I	CCTNAGC	5 cut(s)	353, 1367, 2066, 2143, 2165
Bpu1102I	GCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	7 cut(s)	50, 451, 548, 1923, 2003, 2052, 2231
BsaAI	YACGTR	3 cut(s)	1041, 1224, 1570
BsaBI	GATNNNNATC	1 cut(s)	2535
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	1010
BsaWI	WCCGGW	4 cut(s)	527, 1339, 1875, 2244
BsaXI	ACNNNNNCTCC	6 cut(s)	2032, 2062, 2392, 2422, 2760, 2790
Bsc4I	CCNNNNNNNGG	8 cut(s)	354, 964, 1362, 1383, 1695, 2147, 2148, 2167
Bse118I	RCCGGY	2 cut(s)	172, 1339
Bse1I	ACTGG	9 cut(s)	76, 1172, 1606, 1708, 1835, 1960, 2099, 2705, 2774
Bse3DI	GCAATG	3 cut(s)	592, 1428, 1937
Bse8I	GATNNNNATC	1 cut(s)	2535
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	3 cut(s)	16, 84, 1378
BseGI	GGATG	5 cut(s)	10, 601, 1824, 2026, 2076
BseJI	GATNNNNATC	1 cut(s)	2535
BseLI	CCNNNNNNNGG	8 cut(s)	354, 964, 1362, 1383, 1695, 2147, 2148, 2167
BseMI	GCAATG	3 cut(s)	592, 1428, 1937
BseNI	ACTGG	9 cut(s)	76, 1172, 1606, 1708, 1835, 1960, 2099, 2705, 2774
BseRI	GAGGAG	6 cut(s)	122, 219, 456, 459, 508, 1541
BseSI	GKGCMC	3 cut(s)	1794, 2003, 2230
BseXI	GCAGC	7 cut(s)	174, 511, 965, 1149, 1420, 1448, 1665
BseYI	CCCAGC	3 cut(s)	724, 1466, 2147
Bsh1236I	CGCG	2 cut(s)	388, 657
Bsh1285I	CGRYCG	1 cut(s)	517
BshNI	GGYRCC	2 cut(s)	1800, 2225
BshTI	ACCGGT	1 cut(s)	1339
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	5 cut(s)	260, 342, 1794, 2773, 2856
BsiHKCI	CYCGRG	1 cut(s)	1382
BslFI	GGGAC	4 cut(s)	32, 64, 100, 564
BslI	CCNNNNNNNGG	8 cut(s)	354, 964, 1362, 1383, 1695, 2147, 2148, 2167
BsmAI	GTCTC	5 cut(s)	727, 748, 1010, 1168, 1298
BsmBI	CGTCTC	2 cut(s)	727, 1298
BsmFI	GGGAC	4 cut(s)	32, 64, 100, 564
Bso31I	GGTCTC	1 cut(s)	1010
BsoBI	CYCGRG	1 cut(s)	1382
Bsp119I	TTCGAA	1 cut(s)	692
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp19I	CCATGG	2 cut(s)	373, 2616
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	2 cut(s)	388, 657
BspMAI	CTGCAG	1 cut(s)	1438
BspPI	GGATC	2 cut(s)	971, 984
BspT104I	TTCGAA	1 cut(s)	692
BspT107I	GGYRCC	2 cut(s)	1800, 2225
BspTI	CTTAAG	3 cut(s)	1084, 1805, 2108
BspTNI	GGTCTC	1 cut(s)	1010
BsrBI	CCGCTC	2 cut(s)	456, 525
BsrDI	GCAATG	3 cut(s)	592, 1428, 1937
BsrFI	RCCGGY	2 cut(s)	172, 1339
BsrI	ACTGG	9 cut(s)	76, 1172, 1606, 1708, 1835, 1960, 2099, 2705, 2774
BssAI	RCCGGY	2 cut(s)	172, 1339
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	2 cut(s)	364, 1072
BssT1I	CCWWGG	5 cut(s)	315, 373, 1099, 1290, 2616
Bst2BI	CACGAG	2 cut(s)	364, 1072
Bst2UI	CCWGG	3 cut(s)	16, 84, 1378
Bst4CI	ACNGT	5 cut(s)	181, 714, 1277, 1894, 1983
Bst6I	CTCTTC	3 cut(s)	963, 1166, 2147
BstACI	GRCGYC	1 cut(s)	224
BstAFI	CTTAAG	3 cut(s)	1084, 1805, 2108
BstAPI	GCANNNNNTGC	2 cut(s)	1143, 2802
BstBAI	YACGTR	3 cut(s)	1041, 1224, 1570
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	6 cut(s)	174, 396, 504, 633, 2162, 2798
BstDSI	CCRYGG	3 cut(s)	373, 1768, 2616
BstENI	CCTNNNNNAGG	1 cut(s)	1693
BstF5I	GGATG	5 cut(s)	10, 601, 1824, 2026, 2076
BstFNI	CGCG	2 cut(s)	388, 657
BstHHI	GCGC	3 cut(s)	535, 659, 724
BstMAI	GTCTC	5 cut(s)	727, 748, 1010, 1168, 1298
BstMCI	CGRYCG	1 cut(s)	517
BstNI	CCWGG	3 cut(s)	16, 84, 1378
BstNSI	RCATGY	1 cut(s)	1990
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	1051, 1434
BstSLI	GKGCMC	3 cut(s)	1794, 2003, 2230
BstSNI	TACGTA	1 cut(s)	1570
BstUI	CGCG	2 cut(s)	388, 657
BstV1I	GCAGC	7 cut(s)	174, 511, 965, 1149, 1420, 1448, 1665
BstV2I	GAAGAC	9 cut(s)	62, 219, 745, 861, 1271, 1768, 1864, 1892, 2453
BstX2I	RGATCY	3 cut(s)	825, 976, 2530
BstYI	RGATCY	3 cut(s)	825, 976, 2530
BtgI	CCRYGG	3 cut(s)	373, 1768, 2616
BtgZI	GCGATG	1 cut(s)	2607
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	5 cut(s)	10, 601, 1824, 2026, 2076
BtsIMutI	CAGTG	5 cut(s)	69, 1061, 1701, 2003, 2441
Cac8I	GCNNGC	6 cut(s)	174, 396, 504, 633, 2162, 2798
CaiI	CAGNNNCTG	2 cut(s)	295, 570
CfoI	GCGC	3 cut(s)	535, 659, 724
Cfr10I	RCCGGY	2 cut(s)	172, 1339
Cfr13I	GGNCC	7 cut(s)	33, 46, 541, 727, 1587, 2216, 2620
CseI	GACGC	5 cut(s)	67, 133, 154, 213, 372
Csp6I	GTAC	6 cut(s)	1042, 1240, 1273, 1801, 1984, 2400
CspAI	ACCGGT	1 cut(s)	1339
CviQI	GTAC	6 cut(s)	1042, 1240, 1273, 1801, 1984, 2400
DraI	TTTAAA	1 cut(s)	1966
EaeI	YGGCCR	2 cut(s)	312, 2781
Eam1104I	CTCTTC	3 cut(s)	963, 1166, 2147
EarI	CTCTTC	3 cut(s)	963, 1166, 2147
EciI	GGCGGA	4 cut(s)	119, 268, 447, 1678
Ecl136II	GAGCTC	2 cut(s)	258, 340
Eco105I	TACGTA	1 cut(s)	1570
Eco130I	CCWWGG	5 cut(s)	315, 373, 1099, 1290, 2616
Eco147I	AGGCCT	2 cut(s)	1104, 2695
Eco24I	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	3 cut(s)	46, 2216, 2620
Eco53kI	GAGCTC	2 cut(s)	258, 340
Eco57I	CTGAAG	3 cut(s)	806, 1925, 2465
Eco88I	CYCGRG	1 cut(s)	1382
EcoICRI	GAGCTC	2 cut(s)	258, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	1693
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	2840
EcoRII	CCWGG	3 cut(s)	14, 82, 1376
EcoT14I	CCWWGG	5 cut(s)	315, 373, 1099, 1290, 2616
EcoT22I	ATGCAT	4 cut(s)	601, 677, 1625, 1717
EcoT38I	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
ErhI	CCWWGG	5 cut(s)	315, 373, 1099, 1290, 2616
Esp3I	CGTCTC	2 cut(s)	727, 1298
FalI	AAGNNNNNCTT	3 cut(s)	756, 788, 2840
FaqI	GGGAC	4 cut(s)	32, 64, 100, 564
FauI	CCCGC	3 cut(s)	381, 495, 530
FbaI	TGATCA	2 cut(s)	960, 2536
FblI	GTMKAC	2 cut(s)	95, 843
FokI	GGATG	4 cut(s)	608, 1831, 2013, 2063
FriOI	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
FspBI	CTAG	6 cut(s)	62, 128, 234, 2478, 2574, 2670
GlaI	GCGC	3 cut(s)	534, 658, 723
GsaI	CCCAGC	3 cut(s)	728, 1470, 2151
HgaI	GACGC	5 cut(s)	67, 133, 154, 213, 372
HhaI	GCGC	3 cut(s)	535, 659, 724
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	3 cut(s)	533, 657, 722
HinP1I	GCGC	3 cut(s)	533, 657, 722
HincII	GTYRAC	2 cut(s)	844, 2653
HindII	GTYRAC	2 cut(s)	844, 2653
HindIII	AAGCTT	2 cut(s)	2201, 2798
HphI	GGTGA	6 cut(s)	133, 1276, 1865, 2066, 2102, 2605
Hpy166II	GTNNAC	6 cut(s)	96, 844, 1792, 1979, 2074, 2653
Hpy188III	TCNNGA	9 cut(s)	290, 335, 528, 707, 924, 980, 1369, 2394, 2534
Hpy8I	GTNNAC	6 cut(s)	96, 844, 1792, 1979, 2074, 2653
Hpy99I	CGWCG	5 cut(s)	119, 170, 203, 247, 388
HpyAV	CCTTC	9 cut(s)	167, 532, 688, 925, 1104, 1586, 1699, 1900, 2582
HpyCH4III	ACNGT	5 cut(s)	181, 714, 1277, 1894, 1983
HpyCH4IV	ACGT	5 cut(s)	77, 1040, 1223, 1307, 1569
HpySE526I	ACGT	5 cut(s)	77, 1040, 1223, 1307, 1569
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	3 cut(s)	533, 657, 722
Kpn2I	TCCGGA	1 cut(s)	527
KpnI	GGTACC	1 cut(s)	1804
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	960, 2536
Lsp1109I	GCAGC	7 cut(s)	174, 511, 965, 1149, 1420, 1448, 1665
LweI	GCATC	5 cut(s)	586, 709, 2035, 2547, 2584
MaeI	CTAG	6 cut(s)	62, 128, 234, 2478, 2574, 2670
MaeII	ACGT	5 cut(s)	77, 1040, 1223, 1307, 1569
MaeIII	GTNAC	6 cut(s)	121, 1335, 1597, 1706, 2090, 2473
MbiI	CCGCTC	2 cut(s)	456, 525
MfeI	CAATTG	1 cut(s)	1010
MflI	RGATCY	3 cut(s)	825, 976, 2530
MlsI	TGGCCA	2 cut(s)	314, 2783
MluNI	TGGCCA	2 cut(s)	314, 2783
MlyI	GAGTC	7 cut(s)	35, 101, 461, 750, 1170, 1782, 1878
MmeI	TCCRAC	2 cut(s)	288, 954
Mox20I	TGGCCA	2 cut(s)	314, 2783
Mph1103I	ATGCAT	4 cut(s)	601, 677, 1625, 1717
MroI	TCCGGA	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	2711
MscI	TGGCCA	2 cut(s)	314, 2783
MseI	TTAA	8 cut(s)	186, 1085, 1581, 1674, 1806, 1965, 2109, 2207
MslI	CAYNNNNRTG	5 cut(s)	378, 680, 2555, 2615, 2739
Msp20I	TGGCCA	2 cut(s)	314, 2783
MspA1I	CMGCKG	1 cut(s)	502
MspCI	CTTAAG	3 cut(s)	1084, 1805, 2108
MunI	CAATTG	1 cut(s)	1010
MvaI	CCWGG	3 cut(s)	16, 84, 1378
MvnI	CGCG	2 cut(s)	388, 657
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	7 cut(s)	50, 451, 548, 1923, 2003, 2052, 2231
NcoI	CCATGG	2 cut(s)	373, 2616
NgoMIV	GCCGGC	1 cut(s)	172
NmeAIII	GCCGAG	4 cut(s)	80, 235, 373, 449
NmuCI	GTSAC	3 cut(s)	121, 1597, 2090
NsiI	ATGCAT	4 cut(s)	601, 677, 1625, 1717
NspI	RCATGY	1 cut(s)	1990
NspV	TTCGAA	1 cut(s)	692
OliI	CACNNNNGTG	1 cut(s)	2739
PasI	CCCWGGG	1 cut(s)	83
PceI	AGGCCT	2 cut(s)	1104, 2695
PciI	ACATGT	1 cut(s)	1986
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 774, 840
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	2711
PfeI	GAWTC	6 cut(s)	273, 689, 812, 1131, 2354, 2405
PflFI	GACNNNGTC	3 cut(s)	44, 91, 839
PflMI	CCANNNNNTGG	1 cut(s)	1362
PfoI	TCCNGGA	2 cut(s)	48, 1921
PinAI	ACCGGT	1 cut(s)	1339
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	7 cut(s)	35, 100, 461, 750, 1170, 1781, 1877
PpsI	GAGTC	7 cut(s)	35, 100, 461, 750, 1170, 1781, 1877
Ppu21I	YACGTR	3 cut(s)	1041, 1224, 1570
PscI	ACATGT	1 cut(s)	1986
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	2 cut(s)	1502, 1610
Psp124BI	GAGCTC	2 cut(s)	260, 342
Psp6I	CCWGG	3 cut(s)	14, 82, 1376
PspFI	CCCAGC	3 cut(s)	724, 1466, 2147
PspGI	CCWGG	3 cut(s)	14, 82, 1376
PspPI	GGNCC	7 cut(s)	33, 46, 541, 727, 1587, 2216, 2620
PstI	CTGCAG	1 cut(s)	1438
PstNI	CAGNNNCTG	2 cut(s)	295, 570
PsuI	RGATCY	3 cut(s)	825, 976, 2530
PsyI	GACNNNGTC	3 cut(s)	44, 91, 839
PvuI	CGATCG	1 cut(s)	517
RsaI	GTAC	6 cut(s)	1043, 1241, 1274, 1802, 1985, 2401
RsaNI	GTAC	6 cut(s)	1042, 1240, 1273, 1801, 1984, 2400
RseI	CAYNNNNRTG	5 cut(s)	378, 680, 2555, 2615, 2739
SacI	GAGCTC	2 cut(s)	260, 342
SalI	GTCGAC	1 cut(s)	842
SaqAI	TTAA	8 cut(s)	186, 1085, 1581, 1674, 1806, 1965, 2109, 2207
Sau96I	GGNCC	7 cut(s)	33, 46, 541, 727, 1587, 2216, 2620
SchI	GAGTC	7 cut(s)	35, 101, 461, 750, 1170, 1782, 1878
SfaNI	GCATC	5 cut(s)	586, 709, 2035, 2547, 2584
SfcI	CTRYAG	2 cut(s)	1051, 1434
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	3 cut(s)	46, 2216, 2620
SmiMI	CAYNNNNRTG	5 cut(s)	378, 680, 2555, 2615, 2739
SmlI	CTYRAG	4 cut(s)	341, 1084, 1805, 2108
SmoI	CTYRAG	4 cut(s)	341, 1084, 1805, 2108
SnaBI	TACGTA	1 cut(s)	1570
SpeI	ACTAGT	1 cut(s)	2573
SseBI	AGGCCT	2 cut(s)	1104, 2695
SspI	AATATT	2 cut(s)	190, 2329
SspMI	CTAG	6 cut(s)	62, 128, 234, 2478, 2574, 2670
SstI	GAGCTC	2 cut(s)	260, 342
StuI	AGGCCT	2 cut(s)	1104, 2695
StyI	CCWWGG	5 cut(s)	315, 373, 1099, 1290, 2616
TaaI	ACNGT	5 cut(s)	181, 714, 1277, 1894, 1983
TaiI	ACGT	5 cut(s)	80, 1043, 1226, 1310, 1572
TaqII	GACCGA	1 cut(s)	34
TatI	WGTACW	3 cut(s)	1239, 1983, 2399
TauI	GCSGC	3 cut(s)	401, 482, 1301
TfiI	GAWTC	6 cut(s)	273, 689, 812, 1131, 2354, 2405
Tru1I	TTAA	8 cut(s)	186, 1085, 1581, 1674, 1806, 1965, 2109, 2207
Tru9I	TTAA	8 cut(s)	186, 1085, 1581, 1674, 1806, 1965, 2109, 2207
TscAI	CASTG	5 cut(s)	76, 1068, 1708, 2003, 2448
TseFI	GTSAC	3 cut(s)	121, 1597, 2090
TseI	GCWGC	7 cut(s)	162, 499, 953, 1137, 1433, 1436, 1678
Tsp45I	GTSAC	3 cut(s)	121, 1597, 2090
TspDTI	ATGAA	8 cut(s)	550, 698, 867, 1250, 2190, 2287, 2531, 2535
TspGWI	ACGGA	7 cut(s)	216, 873, 1785, 1819, 1886, 2019, 2069
TspRI	CASTG	5 cut(s)	76, 1068, 1708, 2003, 2448
Tth111I	GACNNNGTC	3 cut(s)	44, 91, 839
Van91I	CCANNNNNTGG	1 cut(s)	1362
Vha464I	CTTAAG	3 cut(s)	1084, 1805, 2108
VneI	GTGCAC	1 cut(s)	1790
VpaK11BI	GGWCC	3 cut(s)	46, 2216, 2620
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	1693
XapI	RAATTY	5 cut(s)	792, 2377, 2720, 2834, 2840
XceI	RCATGY	1 cut(s)	1990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2642
XmiI	GTMKAC	2 cut(s)	95, 843
XmnI	GAANNNNTTC	1 cut(s)	2711
XspI	CTAG	6 cut(s)	62, 128, 234, 2478, 2574, 2670
Zsp2I	ATGCAT	4 cut(s)	601, 677, 1625, 1717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.