Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009819

Physical Location & Seq

Genomic Coordinates Reverse (-)

2413278 .. 2416487

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGACCGGAACGGTGTCGTTTCAGCAAACCCCACCCCCACACTCCCACTCCCAACCCCAACCCCAGCAGCCACAGCCACAGCCAGAACCACCGCAACCGCAACAGCCAGCTCAGCCGCAGAGGGTGATCAGGAAGCTCGTCGTGGAAGTTGTGGACGCACGTAACCTTTTACCTAAAGATGGCCAGGGGAGCTCCAGCGCTTACGTGGTGGCGGACTTCGACGGCCAGCGGAAGCGGACGGCCACCAAGTACAAGGACCTCAACCCCGTCTGGAACGAGCCGCTCGAGTTCGTCGTCTCCGACCCTGACAACATGGACTACGAGGAGCTCGAGATCGAGGTCCTCAACGACAAGCGCTACGGCAACAGCGGCACGGCGCGTAAGAACCACTTCCTCGGCCGGGTGAAGCTCTACGGCACTCAGTTCGCCAAGCGCGGCGACGAGGGTTTGGTGTATTTCCAGCTCGAGAAGAAGAGCGTGTTCAGTTGGATTAGAGGCGAAATCGGGCTCAGAATTTATTACTACGACGAGTTAGTGGACGAGGCGCCGCCGCAGCAGCAGCAGCAGCAACAACCGCCGCTGGAGGATCCGCCGCCGGAGAGGCCGAGGTCTCCGGCGGTTGTGGTAGTCGAGGAAGGGAGGGTGTTTGAGGTCCCTGGAGGACACGTTGAGACTACTACATTTCATGAAGGCTCGTACTCGCCGCCGGTTGTGGTCACCGAGCAATCGCATCCGCAGATGGTTCATATGCACGGTCATCCGCCGCCGGGTCAGGAAATGCACGGTCACGGACATCCGCCGCCCGGTCAGGAAATGCACGGTCATCCGCCGCCGGAGGTTCATTTTCAGCCGGAGGTGAGGAAGATGGAGACTCACAGGGTTGCTCCGATGGGCGAGAGAGTGAGAATTCCGAGGAGGCCTAACGTCGACTTCTCTCCGAAAGTGATTCCTGGAAAGTTCGCGGCGGAGACGACGGCGGAGAAGATTCATCCCTGTGAGCTGGTCGAGCCTATGCAGTACTTGTTCATCAGAATCGTCAAGGCGCGTGGACTCGCGCCGAACGAGATCCCCTACGTCAAGGTCCGTACAAATTGCCACCTCGTGAAGTCGAAAATGGCGGTTCACCGGCCGGGCGAGCCGACGGACTCGCCGGAGTGGAACCAGGTCTTCGCACTCGCTCACAACCGCCCTGACTCGGTGAGTTCCACATTGGAGATCTCCGTTCGCGACTCACCGTCGGAGCAATTCTTAGGCGGCGTATGCTTCGACCTCTCCGACGTGCCGGTCCGAGACCCACCGGACAGTCCCCTGGCTCCACAATGGTACAGACTAGAAGGCGGAGCCGGAGATCCAAATTCCGGTAGAGTATCCGGCGATATCCAGCTCTCTGTTTGGATAGGAACACAAGCCGACGACGCGTTTCCTGAAGCGTGGAGCTCCGACGCACCGTACGTGTCTCACACGCGCTCCAAGGTGTACCAGTCCCCGAAGCTCTGGTATCTGAGAATGACGGTTATGGAGGTTCAGGACCTCCACATTGCATCGAATCTACCTCCGTTAACGGCTCCGGAAATCCGAGTCAAAGCTCAGCTCGGGTCTCAGTCGGCTCGAACCCGGCGCGGGTCCATGAACAACCACTGCGCCTCGTTTCACTGGAATGAGGACCTCATCTTCGTGGCGAGTGAGCCTCTCGAAGACTCGCTGATCCTGCTCGTGGAGGACCGAACCAACAAGGATCCAGTGCTCCTCGGCCACGTCGTAATTCCGGTGAACTCCATCGAGCAGAGAATCGACGAGCGCTACGTGGCGTCGAAATGGTTGCCGCTGGAAGGCAGCGGAGGCGGGCCCTACTGCGGCAGAATGCATCTCCGCCTTTGCTTGGAGGGTGGGTATCACGTGCTGGACGAAGCGGCGCACGTGTGCAGCGACTTTCGGCCCACGGCTAAGCAGCTGTGGAAGCCGGCTGTAGGCATTTTGGAGCTGGGGATTCTCGGCGCGCGCGGCTTGCTTCCGATGAAAGCTAAATCCGGTGGGAAAGGCTCCACGGACGCTTACTGTGTGGCCAAGTATGGTAAAAAATGGGTCAGGACCCGGACCGTTACGGATAGCTTCGACCCGCGCTGGAACGAACAGTACACATGGCAAGTATATGACCCCTGCACCGTCCTCACCGTTGCTGTGTTTGACAACTGGCGCATGTTTGCTGACGTCACAGAGGAAAAGCAGGATTTCCGTATAGGGAAAATACGAATACGCATCTCCACGCTGGAGAGCAACAGGGTGTACAAGAACTCGTACCCGTTGCTGGTTTTGTCCCGGACCGGGTTAAAGAAAATGGGCGAGATAGAGCTGGCGGTCCGGTTCGCCTGCCCGTCCTTGCTGCCCGAGACGTGCGCGGTTTACGGGCAGCCATTGCTGCCAAGAATGCACTACCTCCGCCCTCTCGGGGTGGCCCAGCAGGAGGCTTTACGCGGGGCAGCCACACGCATGGTGGCCGCGTGGCTCGCACGCTCCGAACCGCCCCTGGGGCCGGAGGTGGTGCGGTACATGTTGGATGCGGACTCGCACACGTGGAGCATGAGGAAGAGCAAAGCGAATTGGTTTCGGATCGTGGCGGTGCTGGCGTGGTTGGTCGGGTTAGCGAAGTGGTTGGATGATATACGGAGGTGGAGGAACCCAGTGACGACGGTTTTGGTGCACATGTTGTACTTGGTCCTGGTTTGGTACCCGGATTTGATAGTCCCGACCGGGTTTCTATATGTGTTTCTGATTGGGGTTTGGTACTATCGGTTCAGGCCCAAGATACCAGCTGGAATGGACCTCCGGCTCTCCCAGGCGGATACAGTCGACCCGGATGAACTTGATGAGGAGTTCGATACTTTTCCAAGCTCGAAACCTCCGGATGTGATTCGAGCCCGGTATGATCGGTTAAGAATGCTGGCGGCCCGGGTCCAAACGGTTTTGGGCGACTTTGCGGCCCAAGGAGAGCGCGCCCAGGCCCTTGTGAGCTGGAGGGACCCACGTGCTACAAAGTTGTTCATAGGAGTGTGCTTGCTTATCACTGTGGTGCTATATGTTGTGCCACCCAAAATGGTTGCGGTGGCATTGGGGTTTTACTACCTGCGCCACCCGATGTTCCGAGACCCAATGCCGCCGGCGAGCCTCAACTTTTTCCGGAGGCTTCCGAGCCTGTCGGACAGGTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

1069

Amino Acids

121.01

Weight (kDa)

7.66

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	45 - 138	5.6e-18	C2 domain
C2	PF00168	340 - 444	2.1e-07	C2 domain
C2	PF00168	499 - 609	4.6e-07	C2 domain
C2	PF00168	657 - 768	4.5e-19	C2 domain
PRT_C	PF08372	914 - 1069	3.1e-72	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64060
fragaria_vesca	FvH4_5g03310 FvH4_5g03310 FvH4_5g03310 FvH4_5g03310
malus_domestica	MD06G1093000.v1.1 MD14G1113700.v1.1
prunus_persica	Prupe.5G107400_v2.0.a1
pyrus_communis	pycom06g08880
rosa_chinensis	RchiOBHm_Chr7g0196471
rosa_laevigata	RLG00000004012
rosa_multiflora	Rmu_co8333625.1_g000001 Rmu_sc0000736.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259290
rosa_rugosa	Rorug07G0033600 Rorug07G0033700
rosa_samantha	Rh7AG158000 Rh7BG159900 Rh7CG166400 Rh7DG159200
rosa_wichuraiana	Rw7G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1283
AatII	GACGTC	1 cut(s)	2211
Acc36I	ACCTGC	1 cut(s)	3129
Acc65I	GGTACC	1 cut(s)	2724
AccB1I	GGYRCC	2 cut(s)	544, 2724
AccBSI	CCGCTC	1 cut(s)	283
AccI	GTMKAC	2 cut(s)	927, 2847
AccIII	TCCGGA	3 cut(s)	1567, 2899, 3174
AclWI	GGATC	8 cut(s)	581, 594, 1060, 1343, 1699, 1730, 1743, 2615
AcoI	YGGCCR	8 cut(s)	181, 223, 240, 397, 1127, 1750, 2061, 2493
AcsI	RAATTY	3 cut(s)	513, 906, 1354
AcuI	CTGAAG	1 cut(s)	1446
AcvI	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
AcyI	GRCGYC	3 cut(s)	545, 1808, 2208
AdeI	CACNNNGTG	1 cut(s)	1102
AfeI	AGCGCT	3 cut(s)	199, 356, 1799
AflIII	ACRYGT	7 cut(s)	664, 1416, 1452, 1917, 2547, 2568, 2700
AhdI	GACNNNNNGTC	1 cut(s)	1234
AjiI	CACGTC	3 cut(s)	1279, 1756, 2391
AjnI	CCWGG	9 cut(s)	183, 655, 949, 1161, 1308, 2523, 2715, 2832, 2994
AleI	CACNNNNGTG	1 cut(s)	3065
Alw21I	GWGCWC	5 cut(s)	194, 330, 1439, 1746, 2700
Alw44I	GTGCAC	1 cut(s)	2696
AlwI	GGATC	8 cut(s)	581, 594, 1060, 1343, 1699, 1730, 1743, 2615
Ama87I	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
Aor13HI	TCCGGA	3 cut(s)	1567, 2899, 3174
Aor51HI	AGCGCT	3 cut(s)	199, 356, 1799
ApaI	GGGCCC	1 cut(s)	1848
ApaLI	GTGCAC	1 cut(s)	2696
ApoI	RAATTY	3 cut(s)	513, 906, 1354
ArsI	GACNNNNNNTTYG	4 cut(s)	1655, 1687, 2674, 2706
Asp700I	GAANNNNTTC	1 cut(s)	389
Asp718I	GGTACC	1 cut(s)	2724
AsuHPI	GGTGA	9 cut(s)	136, 415, 709, 868, 1115, 1210, 1224, 1780, 2161
AvaI	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
BaeGI	GKGCMC	2 cut(s)	1848, 2700
BalI	TGGCCA	2 cut(s)	183, 2063
BamHI	GGATCC	2 cut(s)	586, 1735
BanI	GGYRCC	2 cut(s)	544, 2724
BanII	GRGCYC	6 cut(s)	194, 330, 510, 1439, 1848, 2917
BauI	CACGAG	2 cut(s)	1100, 1712
BbrPI	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
BbsI	GAAGAC	2 cut(s)	1159, 1701
Bbv12I	GWGCWC	5 cut(s)	194, 330, 1439, 1746, 2700
BccI	CCATC	5 cut(s)	173, 733, 859, 883, 1784
BceAI	ACGGC	8 cut(s)	238, 255, 376, 390, 430, 990, 1578, 1956
BcgI	CGANNNNNNTGC	4 cut(s)	406, 440, 1801, 1835
BciT130I	CCWGG	9 cut(s)	185, 657, 951, 1163, 1310, 2525, 2717, 2834, 2996
BciVI	GTATCC	2 cut(s)	1378, 2833
BclI	TGATCA	1 cut(s)	126
BfaI	CTAG	1 cut(s)	1331
BfmI	CTRYAG	1 cut(s)	1965
BfoI	RGCGCY	4 cut(s)	201, 358, 548, 1801
BfuAI	ACCTGC	1 cut(s)	3129
BfuI	GTATCC	2 cut(s)	1378, 2833
BglI	GCCNNNNNGGC	2 cut(s)	601, 2527
BglII	AGATCT	1 cut(s)	1215
BlpI	GCTNAGC	3 cut(s)	111, 1587, 1944
BmcAI	AGTACT	1 cut(s)	1019
BmeRI	GACNNNNNGTC	1 cut(s)	1234
BmeT110I	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
BmgBI	CACGTC	3 cut(s)	1279, 1756, 2391
BmrI	ACTGGG	1 cut(s)	2672
BmsI	GCATC	5 cut(s)	739, 1550, 1873, 2265, 2545
BmuI	ACTGGG	1 cut(s)	2672
BpiI	GAAGAC	2 cut(s)	1159, 1701
BplI	GAGNNNNNCTC	2 cut(s)	1672, 1704
BpmI	CTGGAG	5 cut(s)	178, 602, 678, 2288, 3031
Bpu1102I	GCTNAGC	3 cut(s)	111, 1587, 1944
BsaAI	YACGTR	8 cut(s)	161, 205, 1453, 1804, 1897, 1918, 2571, 3023
BsaHI	GRCGYC	3 cut(s)	545, 1808, 2208
BsaI	GGTCTC	4 cut(s)	615, 1284, 1602, 3135
BsaWI	WCCGGW	9 cut(s)	5, 1297, 1358, 1567, 1765, 2027, 2358, 2899, 3174
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 651, 681, 1451, 1481, 1874, 1904
Bse118I	RCCGGY	5 cut(s)	706, 1125, 1282, 1960, 3154
Bse1I	ACTGG	5 cut(s)	1480, 1658, 1739, 2195, 2678
Bse3DI	GCAATG	2 cut(s)	1536, 2411
BseAI	TCCGGA	3 cut(s)	1567, 2899, 3174
BseBI	CCWGG	9 cut(s)	185, 657, 951, 1163, 1310, 2525, 2717, 2834, 2996
BseGI	GGATG	9 cut(s)	730, 757, 793, 823, 988, 2560, 2659, 2860, 2908
BseMI	GCAATG	2 cut(s)	1536, 2411
BseMII	CTCAG	6 cut(s)	125, 434, 523, 1493, 1601, 1613
BseNI	ACTGG	5 cut(s)	1480, 1658, 1739, 2195, 2678
BsePI	GCGCGC	3 cut(s)	1995, 1997, 2989
BseRI	GAGGAG	4 cut(s)	338, 928, 1736, 2882
BseSI	GKGCMC	2 cut(s)	1848, 2700
BseX3I	CGGCCG	2 cut(s)	397, 1127
BseYI	CCCAGC	3 cut(s)	63, 1981, 2454
BsgI	GTGCAG	2 cut(s)	1942, 2143
Bsh1285I	CGRYCG	3 cut(s)	400, 1130, 2748
BshNI	GGYRCC	2 cut(s)	544, 2724
BsiEI	CGRYCG	3 cut(s)	400, 1130, 2748
BsiHKAI	GWGCWC	5 cut(s)	194, 330, 1439, 1746, 2700
BsiHKCI	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
BsiWI	CGTACG	1 cut(s)	1449
BslFI	GGGAC	6 cut(s)	638, 1290, 1468, 2299, 2726, 3029
BsmBI	CGTCTC	3 cut(s)	301, 962, 2381
BsmFI	GGGAC	6 cut(s)	638, 1290, 1468, 2299, 2726, 3029
BsmI	GAATGC	3 cut(s)	1866, 2430, 2940
Bso31I	GGTCTC	4 cut(s)	615, 1284, 1602, 3135
BsoBI	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
Bsp120I	GGGCCC	1 cut(s)	1844
Bsp1286I	GDGCHC	8 cut(s)	194, 330, 510, 1439, 1746, 1848, 2700, 2917
Bsp13I	TCCGGA	3 cut(s)	1567, 2899, 3174
Bsp1407I	TGTACA	1 cut(s)	2283
Bsp1720I	GCTNAGC	3 cut(s)	111, 1587, 1944
Bsp68I	TCGCGA	1 cut(s)	1227
BspCNI	CTCAG	6 cut(s)	124, 433, 522, 1494, 1600, 1612
BspEI	TCCGGA	3 cut(s)	1567, 2899, 3174
BspHI	TCATGA	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	3129
BspPI	GGATC	8 cut(s)	581, 594, 1060, 1343, 1699, 1730, 1743, 2615
BspQI	GCTCTTC	2 cut(s)	467, 2579
BspT107I	GGYRCC	2 cut(s)	544, 2724
BspTNI	GGTCTC	4 cut(s)	615, 1284, 1602, 3135
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	2 cut(s)	1536, 2411
BsrFI	RCCGGY	5 cut(s)	706, 1125, 1282, 1960, 3154
BsrGI	TGTACA	1 cut(s)	2283
BsrI	ACTGG	5 cut(s)	1480, 1658, 1739, 2195, 2678
BssAI	RCCGGY	5 cut(s)	706, 1125, 1282, 1960, 3154
BssHII	GCGCGC	3 cut(s)	1995, 1997, 2989
BssNI	GRCGYC	3 cut(s)	545, 1808, 2208
BssSI	CACGAG	2 cut(s)	1100, 1712
BssT1I	CCWWGG	2 cut(s)	1470, 2980
Bst2BI	CACGAG	2 cut(s)	1100, 1712
Bst2UI	CCWGG	9 cut(s)	185, 657, 951, 1163, 1310, 2525, 2717, 2834, 2996
Bst6I	CTCTTC	2 cut(s)	467, 2579
BstACI	GRCGYC	3 cut(s)	545, 1808, 2208
BstAPI	GCANNNNNTGC	1 cut(s)	2413
BstAUI	TGTACA	1 cut(s)	2283
BstBAI	YACGTR	8 cut(s)	161, 205, 1453, 1804, 1897, 1918, 2571, 3023
BstDEI	CTNAG	8 cut(s)	111, 420, 509, 1249, 1502, 1587, 1599, 1944
BstDSI	CCRYGG	2 cut(s)	1938, 2043
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	9 cut(s)	730, 757, 793, 823, 988, 2560, 2659, 2860, 2908
BstH2I	RGCGCY	4 cut(s)	201, 358, 548, 1801
BstMCI	CGRYCG	3 cut(s)	400, 1130, 2748
BstNI	CCWGG	9 cut(s)	185, 657, 951, 1163, 1310, 2525, 2717, 2834, 2996
BstNSI	RCATGY	3 cut(s)	2200, 2551, 2704
BstPI	GGTNACC	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	1965
BstSLI	GKGCMC	2 cut(s)	1848, 2700
BstV2I	GAAGAC	2 cut(s)	1159, 1701
BstX2I	RGATCY	5 cut(s)	586, 1065, 1215, 1348, 1735
BstXI	CCANNNNNNTGG	1 cut(s)	2488
BstYI	RGATCY	5 cut(s)	586, 1065, 1215, 1348, 1735
BstZI	CGGCCG	2 cut(s)	397, 1127
BsuI	GTATCC	2 cut(s)	1378, 2833
BtgI	CCRYGG	2 cut(s)	1938, 2043
BtrI	CACGTC	3 cut(s)	1279, 1756, 2391
BtsCI	GGATG	9 cut(s)	730, 757, 793, 823, 988, 2560, 2659, 2860, 2908
BtsI	GCAGTG	1 cut(s)	1636
BtsIMutI	CAGTG	5 cut(s)	1636, 1651, 1746, 2685, 3060
BtuMI	TCGCGA	1 cut(s)	1227
BveI	ACCTGC	1 cut(s)	3129
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	5 cut(s)	706, 1125, 1282, 1960, 3154
Cfr9I	CCCGGG	1 cut(s)	2946
CpoI	CGGWCCG	4 cut(s)	1285, 2094, 2319, 2356
CseI	GACGC	5 cut(s)	164, 1424, 1451, 1797, 2057
CsiI	ACCWGGT	1 cut(s)	1161
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CspI	CGGWCCG	4 cut(s)	1285, 2094, 2319, 2356
CviAII	CATG	9 cut(s)	313, 686, 1627, 2139, 2197, 2488, 2548, 2578, 2701
DdeI	CTNAG	8 cut(s)	111, 420, 509, 1249, 1502, 1587, 1599, 1944
DinI	GGCGCC	1 cut(s)	546
DraIII	CACNNNGTG	1 cut(s)	1102
DrdI	GACNNNNNNGTC	1 cut(s)	1283
DriI	GACNNNNNGTC	1 cut(s)	1234
DseDI	GACNNNNNNGTC	1 cut(s)	1283
EaeI	YGGCCR	8 cut(s)	181, 223, 240, 397, 1127, 1750, 2061, 2493
EagI	CGGCCG	2 cut(s)	397, 1127
Eam1104I	CTCTTC	2 cut(s)	467, 2579
Eam1105I	GACNNNNNGTC	1 cut(s)	1234
EarI	CTCTTC	2 cut(s)	467, 2579
Ecl136II	GAGCTC	3 cut(s)	192, 328, 1437
EclXI	CGGCCG	2 cut(s)	397, 1127
Eco130I	CCWWGG	2 cut(s)	1470, 2980
Eco147I	AGGCCT	1 cut(s)	919
Eco24I	GRGCYC	6 cut(s)	194, 330, 510, 1439, 1848, 2917
Eco31I	GGTCTC	4 cut(s)	615, 1284, 1602, 3135
Eco32I	GATATC	1 cut(s)	1378
Eco47III	AGCGCT	3 cut(s)	199, 356, 1799
Eco52I	CGGCCG	2 cut(s)	397, 1127
Eco53kI	GAGCTC	3 cut(s)	192, 328, 1437
Eco57I	CTGAAG	1 cut(s)	1446
Eco72I	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
Eco88I	CYCGRG	7 cut(s)	284, 329, 464, 1592, 2384, 2444, 2946
Eco91I	GGTNACC	1 cut(s)	715
EcoICRI	GAGCTC	3 cut(s)	192, 328, 1437
EcoO109I	RGGNCCY	9 cut(s)	256, 340, 652, 1528, 1663, 1845, 2088, 2998, 3016
EcoO65I	GGTNACC	1 cut(s)	715
EcoRI	GAATTC	1 cut(s)	906
EcoRII	CCWGG	9 cut(s)	183, 655, 949, 1161, 1308, 2523, 2715, 2832, 2994
EcoRV	GATATC	1 cut(s)	1378
EcoT14I	CCWWGG	2 cut(s)	1470, 2980
EcoT22I	ATGCAT	1 cut(s)	1866
EcoT38I	GRGCYC	6 cut(s)	194, 330, 510, 1439, 1848, 2917
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	1470, 2980
Esp3I	CGTCTC	3 cut(s)	301, 962, 2381
FaeI	CATG	9 cut(s)	316, 689, 1630, 2142, 2200, 2491, 2551, 2581, 2704
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	6 cut(s)	638, 1290, 1468, 2299, 2726, 3029
FatI	CATG	9 cut(s)	312, 685, 1626, 2138, 2196, 2487, 2547, 2577, 2700
FauI	CCCGC	4 cut(s)	1613, 1835, 2124, 2465
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	2 cut(s)	927, 2847
FokI	GGATG	9 cut(s)	717, 744, 780, 810, 975, 2567, 2666, 2867, 2915
FriOI	GRGCYC	6 cut(s)	194, 330, 510, 1439, 1848, 2917
FspBI	CTAG	1 cut(s)	1331
GsaI	CCCAGC	3 cut(s)	67, 1985, 2458
GsuI	CTGGAG	5 cut(s)	178, 602, 678, 2288, 3031
HaeII	RGCGCY	4 cut(s)	201, 358, 548, 1801
HgaI	GACGC	5 cut(s)	164, 1424, 1451, 1797, 2057
Hin1I	GRCGYC	3 cut(s)	545, 1808, 2208
Hin1II	CATG	9 cut(s)	316, 689, 1630, 2142, 2200, 2491, 2551, 2581, 2704
HincII	GTYRAC	3 cut(s)	928, 1560, 2848
HindII	GTYRAC	3 cut(s)	928, 1560, 2848
HpaI	GTTAAC	1 cut(s)	1560
HphI	GGTGA	9 cut(s)	136, 415, 709, 868, 1115, 1210, 1224, 1780, 2161
HpyAV	CCTTC	4 cut(s)	629, 683, 1328, 1823
HpyF3I	CTNAG	8 cut(s)	111, 420, 509, 1249, 1502, 1587, 1599, 1944
Hsp92I	GRCGYC	3 cut(s)	545, 1808, 2208
Hsp92II	CATG	9 cut(s)	316, 689, 1630, 2142, 2200, 2491, 2551, 2581, 2704
KasI	GGCGCC	1 cut(s)	544
KflI	GGGWCCC	1 cut(s)	3016
Kpn2I	TCCGGA	3 cut(s)	1567, 2899, 3174
KpnI	GGTACC	1 cut(s)	2728
KroI	GCCGGC	2 cut(s)	1960, 3154
KroNI	GCCGGC	2 cut(s)	1962, 3156
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	1560
LguI	GCTCTTC	2 cut(s)	467, 2579
LweI	GCATC	5 cut(s)	739, 1550, 1873, 2265, 2545
MabI	ACCWGGT	1 cut(s)	1161
MaeI	CTAG	1 cut(s)	1331
MaeIII	GTNAC	6 cut(s)	161, 715, 785, 2098, 2209, 2680
MauBI	CGCGCGCG	1 cut(s)	1997
MbiI	CCGCTC	1 cut(s)	283
MboII	GAAGA	8 cut(s)	481, 484, 874, 994, 1159, 1663, 1706, 2596
MflI	RGATCY	5 cut(s)	586, 1065, 1215, 1348, 1735
MhlI	GDGCHC	8 cut(s)	194, 330, 510, 1439, 1746, 1848, 2700, 2917
MlsI	TGGCCA	2 cut(s)	183, 2063
MluCI	AATT	7 cut(s)	513, 906, 1090, 1244, 1354, 1761, 2596
MluI	ACGCGT	1 cut(s)	1416
MluNI	TGGCCA	2 cut(s)	183, 2063
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	8 cut(s)	865, 1044, 1139, 1187, 1223, 1587, 1691, 2555
MmeI	TCCRAC	8 cut(s)	324, 467, 1218, 1299, 1464, 2532, 2631, 3174
Mox20I	TGGCCA	2 cut(s)	183, 2063
Mph1103I	ATGCAT	1 cut(s)	1866
MreI	CGCCGGCG	1 cut(s)	3154
MroI	TCCGGA	3 cut(s)	1567, 2899, 3174
MroNI	GCCGGC	2 cut(s)	1960, 3154
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	2 cut(s)	183, 2063
MseI	TTAA	4 cut(s)	1559, 2327, 2930, 3203
MslI	CAYNNNNRTG	6 cut(s)	993, 1656, 1673, 2486, 3044, 3065
Msp20I	TGGCCA	2 cut(s)	183, 2063
MspA1I	CMGCKG	7 cut(s)	229, 369, 580, 1825, 1836, 1951, 2810
Mva1269I	GAATGC	3 cut(s)	1866, 2430, 2940
MvaI	CCWGG	9 cut(s)	185, 657, 951, 1163, 1310, 2525, 2717, 2834, 2996
NaeI	GCCGGC	2 cut(s)	1962, 3156
NarI	GGCGCC	1 cut(s)	545
NdeI	CATATG	1 cut(s)	747
NgoMIV	GCCGGC	2 cut(s)	1960, 3154
NlaIII	CATG	9 cut(s)	316, 689, 1630, 2142, 2200, 2491, 2551, 2581, 2704
NmeAIII	GCCGAG	4 cut(s)	375, 630, 1728, 1971
NmuCI	GTSAC	4 cut(s)	715, 785, 2209, 2680
NruI	TCGCGA	1 cut(s)	1227
NsiI	ATGCAT	1 cut(s)	1866
NspI	RCATGY	3 cut(s)	2200, 2551, 2704
OliI	CACNNNNGTG	1 cut(s)	3065
PaeR7I	CTCGAG	3 cut(s)	284, 329, 464
PagI	TCATGA	1 cut(s)	685
PasI	CCCWGGG	1 cut(s)	2524
PauI	GCGCGC	3 cut(s)	1995, 1997, 2989
PceI	AGGCCT	1 cut(s)	919
PciI	ACATGT	2 cut(s)	2547, 2700
PciSI	GCTCTTC	2 cut(s)	467, 2579
PctI	GAATGC	3 cut(s)	1866, 2430, 2940
PdiI	GCCGGC	2 cut(s)	1962, 3156
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	7 cut(s)	946, 985, 1032, 1546, 1788, 1987, 2908
Pfl23II	CGTACG	1 cut(s)	1449
PfoI	TCCNGGA	2 cut(s)	949, 2315
PleI	GAGTC	8 cut(s)	865, 1044, 1139, 1187, 1223, 1586, 1691, 2555
PluTI	GGCGCC	1 cut(s)	548
PmaCI	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
PmlI	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
PpsI	GAGTC	8 cut(s)	865, 1044, 1139, 1187, 1223, 1586, 1691, 2555
Ppu21I	YACGTR	8 cut(s)	161, 205, 1453, 1804, 1897, 1918, 2571, 3023
PpuMI	RGGWCCY	7 cut(s)	256, 340, 652, 1528, 1663, 2088, 3016
PscI	ACATGT	2 cut(s)	2547, 2700
Psp124BI	GAGCTC	3 cut(s)	194, 330, 1439
Psp5II	RGGWCCY	7 cut(s)	256, 340, 652, 1528, 1663, 2088, 3016
Psp6I	CCWGG	9 cut(s)	183, 655, 949, 1161, 1308, 2523, 2715, 2832, 2994
PspCI	CACGTG	4 cut(s)	1897, 1918, 2571, 3023
PspEI	GGTNACC	1 cut(s)	715
PspFI	CCCAGC	3 cut(s)	63, 1981, 2454
PspGI	CCWGG	9 cut(s)	183, 655, 949, 1161, 1308, 2523, 2715, 2832, 2994
PspLI	CGTACG	1 cut(s)	1449
PspOMI	GGGCCC	1 cut(s)	1844
PspPPI	RGGWCCY	7 cut(s)	256, 340, 652, 1528, 1663, 2088, 3016
PspXI	VCTCGAGB	1 cut(s)	284
PsrI	GAACNNNNNNTAC	4 cut(s)	2117, 2149, 2774, 2806
PsuI	RGATCY	5 cut(s)	586, 1065, 1215, 1348, 1735
PteI	GCGCGC	3 cut(s)	1995, 1997, 2989
PvuII	CAGCTG	2 cut(s)	1951, 2810
RruI	TCGCGA	1 cut(s)	1227
RseI	CAYNNNNRTG	6 cut(s)	993, 1656, 1673, 2486, 3044, 3065
Rsr2I	CGGWCCG	4 cut(s)	1285, 2094, 2319, 2356
RsrII	CGGWCCG	4 cut(s)	1285, 2094, 2319, 2356
SacI	GAGCTC	3 cut(s)	194, 330, 1439
SalI	GTCGAC	2 cut(s)	926, 2846
SapI	GCTCTTC	2 cut(s)	467, 2579
SaqAI	TTAA	4 cut(s)	1559, 2327, 2930, 3203
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	8 cut(s)	865, 1044, 1139, 1187, 1223, 1587, 1691, 2555
SduI	GDGCHC	8 cut(s)	194, 330, 510, 1439, 1746, 1848, 2700, 2917
SexAI	ACCWGGT	1 cut(s)	1161
SfaNI	GCATC	5 cut(s)	739, 1550, 1873, 2265, 2545
SfcI	CTRYAG	1 cut(s)	1965
SfoI	GGCGCC	1 cut(s)	546
Sfr274I	CTCGAG	3 cut(s)	284, 329, 464
SgrAI	CRCCGGYG	1 cut(s)	3154
SlaI	CTCGAG	3 cut(s)	284, 329, 464
SmaI	CCCGGG	1 cut(s)	2948
SmiMI	CAYNNNNRTG	6 cut(s)	993, 1656, 1673, 2486, 3044, 3065
SmlI	CTYRAG	3 cut(s)	284, 329, 464
SmoI	CTYRAG	3 cut(s)	284, 329, 464
Sse9I	AATT	7 cut(s)	513, 906, 1090, 1244, 1354, 1761, 2596
SseBI	AGGCCT	1 cut(s)	919
SspDI	GGCGCC	1 cut(s)	544
SspMI	CTAG	1 cut(s)	1331
SstI	GAGCTC	3 cut(s)	194, 330, 1439
StuI	AGGCCT	1 cut(s)	919
StyI	CCWWGG	2 cut(s)	1470, 2980
TaqII	GACCGA	1 cut(s)	1737
TasI	AATT	7 cut(s)	513, 906, 1090, 1244, 1354, 1761, 2596
TatI	WGTACW	5 cut(s)	249, 1017, 2133, 2283, 2706
TfiI	GAWTC	7 cut(s)	946, 985, 1032, 1546, 1788, 1987, 2908
Tru1I	TTAA	4 cut(s)	1559, 2327, 2930, 3203
Tru9I	TTAA	4 cut(s)	1559, 2327, 2930, 3203
TscAI	CASTG	5 cut(s)	1643, 1658, 1746, 2685, 3067
TseFI	GTSAC	4 cut(s)	715, 785, 2209, 2680
Tsp45I	GTSAC	4 cut(s)	715, 785, 2209, 2680
TspGWI	ACGGA	9 cut(s)	804, 1073, 1157, 1210, 1545, 2060, 2117, 2222, 2677
TspMI	CCCGGG	1 cut(s)	2946
TspRI	CASTG	5 cut(s)	1643, 1658, 1746, 2685, 3067
VneI	GTGCAC	1 cut(s)	2696
XapI	RAATTY	3 cut(s)	513, 906, 1354
XceI	RCATGY	3 cut(s)	2200, 2551, 2704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 2488
XhoI	CTCGAG	3 cut(s)	284, 329, 464
XmaI	CCCGGG	1 cut(s)	2946
XmiI	GTMKAC	2 cut(s)	927, 2847
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	1331
ZraI	GACGTC	1 cut(s)	2209
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	1866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.