Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333625.1

Orthogroup ID

OG0009819

Physical Location & Seq

Genomic Coordinates Forward (+)

246 .. 983

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgagggctcatcccaggcacgaacgccgatgggcctcagactcggtcccggagaagacgctagtcagcactggcacgtcccctgggactgagtctacctcggcggaggagttcgtcgaggtgacgctagatttgcaggacgacaacaccatcgtccttcgcagcgtcgagccggcgactgtgattaatattacagacgacggaggagccgaggctactccggcgtcttcctctaggtcgccgtcgataaggcggagctcgtccaacagcagaatccggcagttctctcaggagctgaaagcggaggcggtggccaaggccaagcagttctctcaggagctcaaggccgagctgaggcggttctcgtggagccatggaaatgcgtcgcgggtgctggcggcttcttcggcggttgcttctcagaatgacggcggaagcggaggaggagccgggagcggttattatgactcggctcttgcggcgagggctctgaggaggcagcgggctcagctcgatcgaacccgctccggagcgcagaaggccctccggggactgaggttcatcagcaactgcaagaacaagagcaatggcgtggatgcatggaacgaggtggagagcaatttcaacaagctcgccaaagacggcaacctctaccgcgccgatttcgcccaatgcataggttcagttcaatcttttcatgatcaattccacgcattgtttgtgatcaagtcagttact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

246

Amino Acids

26.68

Weight (kDa)

9.51

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64060
fragaria_vesca	FvH4_5g03310 FvH4_5g03310 FvH4_5g03310 FvH4_5g03310
malus_domestica	MD06G1093000.v1.1 MD14G1113700.v1.1
prunus_persica	Prupe.5G107400_v2.0.a1
pyrus_communis	pycom06g08880
rosa_chinensis	RchiOBHm_Chr7g0196471
rosa_laevigata	RLG00000004012
rosa_multiflora	Rmu_co8333625.1_g000001 Rmu_sc0000736.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259290
rosa_rugosa	Rorug07G0033600 Rorug07G0033700
rosa_samantha	Rh7AG158000 Rh7BG159900 Rh7CG166400 Rh7DG159200
rosa_wichuraiana	Rw7G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	456, 525
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	2 cut(s)	388, 657
AccIII	TCCGGA	1 cut(s)	527
AcoI	YGGCCR	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	625, 689
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	2 cut(s)	14, 82
AluBI	AGCT	6 cut(s)	258, 295, 340, 352, 511, 631
AluI	AGCT	6 cut(s)	258, 295, 340, 352, 511, 631
Alw21I	GWGCWC	2 cut(s)	260, 342
AlwNI	CAGNNNCTG	2 cut(s)	295, 570
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	5 cut(s)	33, 312, 318, 345, 540
ApeKI	GCWGC	2 cut(s)	162, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	535, 659
AspS9I	GGNCC	3 cut(s)	33, 46, 541
AsuC2I	CCSGG	3 cut(s)	50, 451, 548
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
BauI	CACGAG	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	62, 219
Bbv12I	GWGCWC	2 cut(s)	260, 342
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	174, 511
BccI	CCATC	2 cut(s)	24, 158
BceAI	ACGGC	3 cut(s)	226, 445, 658
BciT130I	CCWGG	2 cut(s)	16, 84
BclI	TGATCA	2 cut(s)	700, 723
BcnI	CCSGG	3 cut(s)	50, 451, 548
BfaI	CTAG	3 cut(s)	62, 128, 234
BisI	GCNGC	4 cut(s)	163, 399, 480, 500
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	4 cut(s)	164, 400, 481, 501
Bme1390I	CCNGG	5 cut(s)	16, 50, 84, 451, 548
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	33, 46, 541
BmiI	GGNNCC	4 cut(s)	48, 208, 371, 448
BmrFI	CCNGG	5 cut(s)	16, 50, 84, 451, 548
BmsI	GCATC	1 cut(s)	586
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	62, 219
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	3 cut(s)	50, 451, 548
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	8 cut(s)	14, 82, 83, 99, 210, 315, 373, 547
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	592
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	16, 84
BseDI	CCNNGG	8 cut(s)	14, 82, 83, 99, 210, 315, 373, 547
BseGI	GGATG	2 cut(s)	10, 601
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	9 cut(s)	51, 81, 302, 344, 347, 434, 482, 521, 545
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	5 cut(s)	122, 219, 456, 459, 508
BseXI	GCAGC	2 cut(s)	174, 511
Bsh1236I	CGCG	2 cut(s)	388, 657
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	5 cut(s)	35, 314, 320, 347, 542
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	2 cut(s)	260, 342
BsiSI	CCGG	7 cut(s)	50, 173, 221, 277, 450, 528, 547
BslFI	GGGAC	4 cut(s)	32, 64, 100, 564
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmFI	GGGAC	4 cut(s)	32, 64, 100, 564
BsnI	GGCC	5 cut(s)	35, 314, 320, 347, 542
Bsp1286I	GDGCHC	5 cut(s)	10, 260, 342, 490, 508
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	514, 700, 723
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp19I	CCATGG	1 cut(s)	373
BspANI	GGCC	5 cut(s)	35, 314, 320, 347, 542
BspCNI	CTCAG	9 cut(s)	50, 82, 301, 345, 346, 433, 483, 520, 546
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	2 cut(s)	388, 657
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	48, 208, 371, 448
BsrBI	CCGCTC	2 cut(s)	456, 525
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	8 cut(s)	14, 82, 83, 99, 210, 315, 373, 547
BssMI	GATC	3 cut(s)	514, 700, 723
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	364
BssT1I	CCWWGG	2 cut(s)	315, 373
Bst2BI	CACGAG	1 cut(s)	364
Bst2UI	CCWGG	2 cut(s)	16, 84
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	174, 396, 504, 633
BstDEI	CTNAG	9 cut(s)	37, 90, 288, 333, 353, 420, 491, 507, 554
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	10, 601
BstFNI	CGCG	2 cut(s)	388, 657
BstHHI	GCGC	2 cut(s)	535, 659
BstKTI	GATC	3 cut(s)	517, 703, 726
BstMBI	GATC	3 cut(s)	514, 700, 723
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	8 cut(s)	133, 221, 407, 479, 485, 508, 539, 665
BstNI	CCWGG	2 cut(s)	16, 84
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	5 cut(s)	14, 48, 82, 449, 546
BstUI	CGCG	2 cut(s)	388, 657
BstV1I	GCAGC	2 cut(s)	174, 511
BstV2I	GAAGAC	2 cut(s)	62, 219
BsuRI	GGCC	5 cut(s)	35, 314, 320, 347, 542
BtgI	CCRYGG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	10, 601
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	4 cut(s)	174, 396, 504, 633
CaiI	CAGNNNCTG	2 cut(s)	295, 570
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	535, 659
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	33, 46, 541
CseI	GACGC	5 cut(s)	67, 133, 154, 213, 372
CviAII	CATG	3 cut(s)	374, 600, 698
DdeI	CTNAG	9 cut(s)	37, 90, 288, 333, 353, 420, 491, 507, 554
DpnI	GATC	3 cut(s)	516, 702, 725
DpnII	GATC	3 cut(s)	514, 700, 723
EaeI	YGGCCR	1 cut(s)	312
EciI	GGCGGA	3 cut(s)	119, 268, 447
Ecl136II	GAGCTC	2 cut(s)	258, 340
Eco130I	CCWWGG	2 cut(s)	315, 373
Eco24I	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	2 cut(s)	258, 340
EcoICRI	GAGCTC	2 cut(s)	258, 340
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	14, 82
EcoT14I	CCWWGG	2 cut(s)	315, 373
EcoT22I	ATGCAT	2 cut(s)	601, 677
EcoT38I	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
ErhI	CCWWGG	2 cut(s)	315, 373
FaeI	CATG	3 cut(s)	377, 603, 701
FaiI	YATR	5 cut(s)	375, 465, 601, 677, 699
FaqI	GGGAC	4 cut(s)	32, 64, 100, 564
FatI	CATG	3 cut(s)	373, 599, 697
FauI	CCCGC	3 cut(s)	381, 495, 530
FbaI	TGATCA	2 cut(s)	700, 723
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	4 cut(s)	163, 399, 480, 500
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	5 cut(s)	10, 260, 342, 490, 508
Fsp4HI	GCNGC	4 cut(s)	163, 399, 480, 500
FspBI	CTAG	3 cut(s)	62, 128, 234
GlaI	GCGC	2 cut(s)	534, 658
GluI	GCNGC	4 cut(s)	163, 399, 480, 500
HaeIII	GGCC	5 cut(s)	35, 314, 320, 347, 542
HapII	CCGG	7 cut(s)	50, 173, 221, 277, 450, 528, 547
HgaI	GACGC	5 cut(s)	67, 133, 154, 213, 372
HhaI	GCGC	2 cut(s)	535, 659
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	377, 603, 701
Hin6I	GCGC	2 cut(s)	533, 657
HinP1I	GCGC	2 cut(s)	533, 657
HinfI	GANTC	4 cut(s)	41, 92, 273, 467
HpaII	CCGG	7 cut(s)	50, 173, 221, 277, 450, 528, 547
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	40, 423, 492
Hpy188III	TCNNGA	4 cut(s)	290, 335, 528, 698
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	5 cut(s)	119, 170, 203, 247, 388
HpyAV	CCTTC	2 cut(s)	167, 532
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	136, 573, 599, 675
HpyF10VI	GCNNNNNNNGC	8 cut(s)	133, 221, 407, 479, 485, 508, 539, 665
HpyF3I	CTNAG	9 cut(s)	37, 90, 288, 333, 353, 420, 491, 507, 554
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	377, 603, 701
HspAI	GCGC	2 cut(s)	533, 657
Kpn2I	TCCGGA	1 cut(s)	527
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	700, 723
Kzo9I	GATC	3 cut(s)	514, 700, 723
LmnI	GCTCC	9 cut(s)	206, 255, 292, 337, 369, 446, 453, 530, 530
Lsp1109I	GCAGC	2 cut(s)	174, 511
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	3 cut(s)	62, 128, 234
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	121, 733
MalI	GATC	3 cut(s)	516, 702, 725
MbiI	CCGCTC	2 cut(s)	456, 525
MboI	GATC	3 cut(s)	514, 700, 723
MboII	GAAGA	3 cut(s)	67, 219, 396
MhlI	GDGCHC	5 cut(s)	10, 260, 342, 490, 508
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	619, 704
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	35, 101, 461
MmeI	TCCRAC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	2 cut(s)	601, 677
MroI	TCCGGA	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	7 cut(s)	50, 173, 221, 277, 450, 528, 547
MspR9I	CCNGG	5 cut(s)	16, 50, 84, 451, 548
MvaI	CCWGG	2 cut(s)	16, 84
MvnI	CGCG	2 cut(s)	388, 657
MwoI	GCNNNNNNNGC	8 cut(s)	133, 221, 407, 479, 485, 508, 539, 665
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	3 cut(s)	50, 451, 548
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	514, 700, 723
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	377, 603, 701
NlaIV	GGNNCC	4 cut(s)	48, 208, 371, 448
NmeAIII	GCCGAG	4 cut(s)	80, 235, 373, 449
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	2 cut(s)	601, 677
PagI	TCATGA	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	2 cut(s)	44, 91
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	164, 400, 481, 501
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	3 cut(s)	35, 100, 461
PpsI	GAGTC	3 cut(s)	35, 100, 461
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	260, 342
Psp6I	CCWGG	2 cut(s)	14, 82
PspGI	CCWGG	2 cut(s)	14, 82
PspN4I	GGNNCC	4 cut(s)	48, 208, 371, 448
PspPI	GGNCC	3 cut(s)	33, 46, 541
PstNI	CAGNNNCTG	2 cut(s)	295, 570
PsyI	GACNNNGTC	2 cut(s)	44, 91
PvuI	CGATCG	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	2 cut(s)	260, 342
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	163, 399, 480, 500
Sau3AI	GATC	3 cut(s)	514, 700, 723
Sau96I	GGNCC	3 cut(s)	33, 46, 541
SchI	GAGTC	3 cut(s)	35, 101, 461
ScrFI	CCNGG	5 cut(s)	16, 50, 84, 451, 548
SduI	GDGCHC	5 cut(s)	10, 260, 342, 490, 508
SfaNI	GCATC	1 cut(s)	586
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	619, 704
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	3 cut(s)	62, 128, 234
SstI	GAGCTC	2 cut(s)	260, 342
StyD4I	CCNGG	5 cut(s)	14, 48, 82, 449, 546
StyI	CCWWGG	2 cut(s)	315, 373
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	5 cut(s)	117, 168, 245, 513, 517
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	619, 704
TauI	GCSGC	2 cut(s)	401, 482
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	162, 499
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	550, 686
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	76
Tth111I	GACNNNGTC	2 cut(s)	44, 91
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	3 cut(s)	62, 128, 234
Zsp2I	ATGCAT	2 cut(s)	601, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.