Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005739

Physical Location & Seq

Genomic Coordinates Reverse (-)

62151140 .. 62156778

Gene Structure 5639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGGGATTTCAGCTTCTCGAGGGTTTAAAGTGGTTCTCAAGCTGGAAGATGTATGTTGAACAAGGCACCGGAGAGAATGATAAGTGGGATTCTGAATCCCAACATATGGATCTGCTTTCTTCAAAAATTAACAGACCTGGACCAATTGATAATTCTGATATAGTTGAAAAAGAATCCGAGGGAGGCGGAGGTGATCTACAGCTTCGTAGAATGCTGATGGAAGAGCTTGACTATGTCTTAGTTTCTCAAGAAGTTTGGGAAAAGCTATTTGATTGGTATAAAGGAGGTCCATCATTACCAAGAAAGATGATTTCTCAGGGTGGCATTAATAAGAATTTGATGGTGGAGGTTTACCCATTGTGTCTTAAGATTGTTGATTCTAGAGACAACAGCCAGGCAGTTATCTGGTTAAGCAAAAAGGCTTCTGTCCAGGAGCTTTACGAGAAGGTGCGCACAATTAGAGGAATTGAGCAACAAAAGGCCTGTATCTGGGATTACTTCAACAAGCAGAAGCAGTCATTATTGAATGCTTCGAACCAAACGTTGGAGCAGTTGAACTTGCAAATGGATCAAGAAGTTCTTCTTGAGGTGCAAGTTGATGGAAACTATTCCTCCCAAATTTCCATGGATTCAACTGGAAATGAGTTAGCATTGGTAACTGTAGAACCATCAAGGTCATCGATGACAATTGCCGGGGGTCCTACTTTGTCGAATGGTCATTCGATGGGTTATAATAATAATGTGCTTCAGGGAAGCACCTTAAGTGGCTCAGCATCAACAGATACAGATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGAGACAAGGGAGGTTTGGCAGGATTGCAGAATCTCGGAAATACTTGCTTTATGAATAGTTCCCTCCAGTGCTTAGTCCATACACCCCCTCTTGTTGATTATTTTTTGCAAGATTACTCTGATGAGATCAACACAGACAATCCCTTAGGGATGCATGGTGAGCTTGCTCTTGCCTTTGGTGAGCTGTTGAGGAAATTGTGGTCCTCTGGGAGAACAACAATTGCTCCACGTGCATTCAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTTAGTGGTTATAATCAGCATGACTCTCAGGAACTTCTTGCTTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTCAAAAATAAGCCCTACATTGAAACAAAGGATTCAGATGGTCGTCCGGATGAGGAAGTTGCAGATGAGTGTTGGAAAAATCACAAGGCCCGGAATGATTCATTGATTGTGGATGTTTGCCAAGGTCAATATAAGTCAACTTTGGTATGCCCGTCTTGTGCCAAGGTTTCAATTACCTTTGATCCTTTTATGTACTTATCGGTGCCACTACCTTCAACCGTTACTCGGTCAATGACGGTGACTGTACTTTATGGTGATGGACGGGGTCTTCCAATGCCGTACACTGTAACCTTGATAAAAGATCGCTCTGTTAAAGATCTTGTTGAGGCATTGGGGACTGCATGCTGCTTGAAGAGTGATGAAAGCCTTCTGCTTGCTGAGATATACGACCATCGAATTTATCGATATTTGGAGAGCCCTTCTGAACACTTGTCTTCAATTAAGCCTGATGAACGTATCGTGGCCTATCGGTATTCTAAAGGGGCAGGAACAACCAGACTTGAAATAATGCATCGACGGCAGGAAAAATGTGCACTGGATCCTTTGAAGGGTCAGAGAAAACTTTTTGGAACACCTTTGGTTACTTATCTAGGAGAAGACCAAATAAATGGAGTTGATATTGAAAGAGCTGTTTCTACATCTCTGTCGCCTTTGAGGAGAGCTGTTAAGCTTCATAGTACAAAAGAAAATGGCTCAACTTCAGAAGCTGTTGATGAACCATCAAACAGCTACAATTTGAGGTCCATGGACAATACAGAACTAGAGGAAGCATCTAGCAGGGAGTTATCCTTTCACCTATTTCTAGCCCTTGATGAAAGGGGTCACACATGCAAGCCACTTGAGAAGTTTTCTTCCTTAAAGTCTGGTAAAAATATTAAGGTTTTTCTGGACTGGACTGAGAAAGAAGATGAATCATATGACACTAGTTACCTGGAGAATCTACCTGAGGTATACAAGTCTGGTAATACTGCAAAGAAAACTCGACAAGAAGCTATTTCCTTATTTACTTGCTTAGAGGCATTCTTGAAGGAAGAACCTTTGGGTCCCTCGGATATGTGGTACTGCCCAAGGTGCAAGGAGCATAGACAGGCTACCAAGAAGCTGGACTTGTGGATGTTGCCAGAGGTTCTGGTTTTTCACTTGAAACGATTCTCATACAGCAGATACTCGAAGAACAAACTCGACAGTTTTGTGACTTTTCCAATTCATAATCTTGATTTGAGTAGATATGTGATGAGCAAGGATGGGAAACCGTATATATATGAGCTATATGCCATTAGCAACCATTATGGTGGTCTAGGTGGTGGGCACTACACTGCTTATGCGAAGTTGATTGATGAAAACAGATGGTACCATTTCGATGACAGTCATGTTTCTCCAGTCAGTGAAAGCGACATCAAGACTTCGGCTGCCTATGTGCTTTTTTATCGCAGAGTTAAAAGTGGATCAAATACAGGAGAGGGCGATGCATCAGAGACTCATATGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH

Protein Analysis

887

Amino Acids

100.09

Weight (kDa)

5.67

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	10 - 104	2.2e-18	DUSP domain
UCH	PF00443	281 - 865	1.1e-77	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	281 - 457	6.7e-06	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32850 AT4G10570 AT4G10590 AT4G10590 AT4G10590 AT4G10590
fragaria_vesca	FvH4_5g10610 FvH4_5g10610 FvH4_5g10610
malus_domestica	MD06G1121900.v1.1 MD14G1138300.v1.1
prunus_persica	Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1
pyrus_communis	pycom06g11300 pycom14g11340
rosa_chinensis	RchiOBHm_Chr7g0187531
rosa_laevigata	RLG00000004773
rosa_multiflora	Rmu_sc0008640.1_g000004 Rmu_sc0014966.1_g000001 Rmu_sc0023622.1_g000001 Rmu_ssc0000110.1_g000024
rosa_roxburghii	Rroxscaffold_3G00267350
rosa_rugosa	Rorug06G0482500
rosa_samantha	Rh7AG087100 Rh7BG088500 Rh7CG087800 Rh7DG089400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	732, 1101
Acc16I	TGCGCA	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	2517
AccB1I	GGYRCC	3 cut(s)	65, 1369, 2517
AccB7I	CCANNNNNTGG	2 cut(s)	106, 544
AccI	GTMKAC	1 cut(s)	2118
AccIII	TCCGGA	1 cut(s)	1213
AciI	CCGC	1 cut(s)	186
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	6 cut(s)	117, 576, 1343, 1700, 1713, 2620
AcsI	RAATTY	3 cut(s)	334, 618, 1563
AcuI	CTGAAG	2 cut(s)	731, 1851
AcvI	CACGTG	1 cut(s)	1052
AfaI	GTAC	6 cut(s)	1361, 1413, 1448, 1846, 2228, 2519
AfiI	CCNNNNNNNGG	5 cut(s)	106, 489, 544, 1392, 1715
AflII	CTTAAG	2 cut(s)	365, 760
AhlI	ACTAGT	1 cut(s)	2090
AjnI	CCWGG	4 cut(s)	136, 393, 429, 2097
AjuI	GAANNNNNNNTTGG	4 cut(s)	136, 168, 527, 559
Alw21I	GWGCWC	1 cut(s)	1702
Alw26I	GTCTC	3 cut(s)	378, 819, 2636
Alw44I	GTGCAC	1 cut(s)	1698
AlwI	GGATC	6 cut(s)	117, 576, 1343, 1700, 1713, 2620
AlwNI	CAGNNNCTG	1 cut(s)	1874
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	1213
AoxI	GGCC	3 cut(s)	480, 1254, 1629
ApaLI	GTGCAC	1 cut(s)	1698
ApeKI	GCWGC	2 cut(s)	1512, 2576
ApoI	RAATTY	3 cut(s)	334, 618, 1563
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	4 cut(s)	579, 607, 1533, 2315
Asp718I	GGTACC	1 cut(s)	2517
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	7 cut(s)	140, 287, 698, 1023, 1255, 1908, 2210
AsuC2I	CCSGG	2 cut(s)	694, 1258
AsuHPI	GGTGA	6 cut(s)	203, 992, 1013, 1417, 1433, 1952
AsuII	TTCGAA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	6 cut(s)	140, 287, 698, 1023, 1908, 2210
AxyI	CCTNAGG	2 cut(s)	967, 2112
BaeGI	GKGCMC	2 cut(s)	1702, 2478
BamHI	GGATCC	1 cut(s)	1705
BanI	GGYRCC	3 cut(s)	65, 1369, 2517
BanII	GRGCYC	1 cut(s)	1586
BbrPI	CACGTG	1 cut(s)	1052
BbsI	GAAGAC	3 cut(s)	1427, 1593, 1770
Bbv12I	GWGCWC	1 cut(s)	1702
BbvI	GCAGC	2 cut(s)	1499, 2563
BceAI	ACGGC	2 cut(s)	1429, 1700
BciT130I	CCWGG	4 cut(s)	138, 395, 431, 2099
BcnI	CCSGG	2 cut(s)	694, 1258
BcoDI	GTCTC	3 cut(s)	378, 819, 2636
BcuI	ACTAGT	1 cut(s)	2090
BfaI	CTAG	7 cut(s)	381, 1757, 1928, 1941, 1970, 2091, 2465
BfmI	CTRYAG	2 cut(s)	197, 660
BfrI	CTTAAG	2 cut(s)	365, 760
BglII	AGATCT	1 cut(s)	1483
BisI	GCNGC	2 cut(s)	1513, 2577
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	2 cut(s)	1514, 2578
Bme1390I	CCNGG	6 cut(s)	138, 395, 431, 694, 1258, 2099
Bme18I	GGWCC	6 cut(s)	140, 287, 698, 1023, 1908, 2210
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	7 cut(s)	140, 287, 698, 1023, 1255, 1908, 2210
BmiI	GGNNCC	7 cut(s)	67, 699, 1371, 1707, 2211, 2212, 2519
BmrFI	CCNGG	6 cut(s)	138, 395, 431, 694, 1258, 2099
BmsI	GCATC	6 cut(s)	782, 963, 1687, 1946, 2623, 2645
BpiI	GAAGAC	3 cut(s)	1427, 1593, 1770
BpmI	CTGGAG	3 cut(s)	872, 2120, 2529
Bpu1102I	GCTNAGC	1 cut(s)	769
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	4 cut(s)	22, 231, 605, 2027
BpuMI	CCSGG	2 cut(s)	694, 1258
Bsa29I	ATCGAT	2 cut(s)	680, 1570
BsaAI	YACGTR	1 cut(s)	1052
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	8 cut(s)	177, 624, 693, 1288, 1329, 1911, 2214, 2234
BsaWI	WCCGGW	2 cut(s)	68, 1213
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 1030, 1060
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 489, 544, 1392, 1715
Bse1I	ACTGG	6 cut(s)	640, 889, 1143, 1707, 2063, 2546
Bse21I	CCTNAGG	2 cut(s)	967, 2112
Bse8I	GATNNNNATC	1 cut(s)	1161
BseAI	TCCGGA	1 cut(s)	1213
BseBI	CCWGG	4 cut(s)	138, 395, 431, 2099
BseCI	ATCGAT	2 cut(s)	680, 1570
BseDI	CCNNGG	8 cut(s)	177, 624, 693, 1288, 1329, 1911, 2214, 2234
BseGI	GGATG	6 cut(s)	978, 1147, 1222, 1285, 2286, 2416
BseJI	GATNNNNATC	1 cut(s)	1161
BseLI	CCNNNNNNNGG	5 cut(s)	106, 489, 544, 1392, 1715
BseMII	CTCAG	7 cut(s)	329, 783, 1100, 1130, 1536, 2055, 2103
BseNI	ACTGG	6 cut(s)	640, 889, 1143, 1707, 2063, 2546
BseRI	GAGGAG	2 cut(s)	1074, 1837
BseSI	GKGCMC	2 cut(s)	1702, 2478
BseXI	GCAGC	2 cut(s)	1499, 2563
BshFI	GGCC	3 cut(s)	482, 1256, 1631
BshNI	GGYRCC	3 cut(s)	65, 1369, 2517
BshVI	ATCGAT	2 cut(s)	680, 1570
BsiHKAI	GWGCWC	1 cut(s)	1702
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	4 cut(s)	69, 693, 1214, 1258
BslFI	GGGAC	2 cut(s)	1516, 2196
BslI	CCNNNNNNNGG	5 cut(s)	106, 489, 544, 1392, 1715
BsmAI	GTCTC	3 cut(s)	378, 819, 2636
BsmFI	GGGAC	2 cut(s)	1516, 2196
BsmI	GAATGC	4 cut(s)	216, 532, 1055, 2186
BsnI	GGCC	3 cut(s)	482, 1256, 1631
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	1586, 1702, 2478
Bsp13I	TCCGGA	1 cut(s)	1213
Bsp143I	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
Bsp1720I	GCTNAGC	1 cut(s)	769
Bsp19I	CCATGG	2 cut(s)	624, 1911
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	482, 1256, 1631
BspCNI	CTCAG	7 cut(s)	328, 782, 1099, 1129, 1537, 2056, 2104
BspDI	ATCGAT	2 cut(s)	680, 1570
BspEI	TCCGGA	1 cut(s)	1213
BspLI	GGNNCC	7 cut(s)	67, 699, 1371, 1707, 2211, 2212, 2519
BspPI	GGATC	6 cut(s)	117, 576, 1343, 1700, 1713, 2620
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	533
BspT107I	GGYRCC	3 cut(s)	65, 1369, 2517
BspTI	CTTAAG	2 cut(s)	365, 760
BsrI	ACTGG	6 cut(s)	640, 889, 1143, 1707, 2063, 2546
BssECI	CCNNGG	8 cut(s)	177, 624, 693, 1288, 1329, 1911, 2214, 2234
BssMI	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
BssNAI	GTATAC	1 cut(s)	2119
BssT1I	CCWWGG	5 cut(s)	624, 1288, 1329, 1911, 2234
Bst1107I	GTATAC	1 cut(s)	2119
Bst2UI	CCWGG	4 cut(s)	138, 395, 431, 2099
Bst4CI	ACNGT	8 cut(s)	661, 1387, 1405, 1411, 1453, 2354, 2421, 2534
Bst6I	CTCTTC	2 cut(s)	216, 1514
BstAFI	CTTAAG	2 cut(s)	365, 760
BstBAI	YACGTR	1 cut(s)	1052
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	4 cut(s)	987, 1510, 1542, 2000
BstDSI	CCRYGG	2 cut(s)	624, 1911
BstF5I	GGATG	6 cut(s)	978, 1147, 1222, 1285, 2286, 2416
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	9 cut(s)	112, 196, 571, 951, 1351, 1471, 1486, 1708, 2615
BstMAI	GTCTC	3 cut(s)	378, 819, 2636
BstMBI	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
BstMWI	GCNNNNNNNGC	5 cut(s)	982, 1052, 1079, 1684, 2238
BstNI	CCWGG	4 cut(s)	138, 395, 431, 2099
BstNSI	RCATGY	2 cut(s)	1512, 1998
BstSCI	CCNGG	6 cut(s)	136, 393, 429, 692, 1256, 2097
BstSFI	CTRYAG	2 cut(s)	197, 660
BstSLI	GKGCMC	2 cut(s)	1702, 2478
BstV1I	GCAGC	2 cut(s)	1499, 2563
BstV2I	GAAGAC	3 cut(s)	1427, 1593, 1770
BstX2I	RGATCY	3 cut(s)	109, 1483, 1705
BstXI	CCANNNNNNTGG	3 cut(s)	1775, 2269, 2459
BstYI	RGATCY	3 cut(s)	109, 1483, 1705
BstZ17I	GTATAC	1 cut(s)	2119
Bsu15I	ATCGAT	2 cut(s)	680, 1570
Bsu36I	CCTNAGG	2 cut(s)	967, 2112
BsuRI	GGCC	3 cut(s)	482, 1256, 1631
BsuTUI	ATCGAT	2 cut(s)	680, 1570
BtgI	CCRYGG	2 cut(s)	624, 1911
BtgZI	GCGATG	1 cut(s)	2646
BtsCI	GGATG	6 cut(s)	978, 1147, 1222, 1285, 2286, 2416
BtsI	GCAGTG	1 cut(s)	2481
BtsIMutI	CAGTG	5 cut(s)	896, 1449, 1700, 2481, 2557
Cac8I	GCNNGC	4 cut(s)	987, 1510, 1542, 2000
CaiI	CAGNNNCTG	1 cut(s)	1874
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	7 cut(s)	140, 287, 698, 1023, 1255, 1908, 2210
ClaI	ATCGAT	2 cut(s)	680, 1570
Csp6I	GTAC	6 cut(s)	1360, 1412, 1447, 1845, 2227, 2518
CviAII	CATG	8 cut(s)	625, 977, 1109, 1151, 1509, 1912, 1995, 2537
CviQI	GTAC	6 cut(s)	1360, 1412, 1447, 1845, 2227, 2518
DpnI	GATC	9 cut(s)	111, 195, 570, 950, 1350, 1470, 1485, 1707, 2614
DpnII	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	216, 1514
EarI	CTCTTC	2 cut(s)	216, 1514
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	5 cut(s)	624, 1288, 1329, 1911, 2234
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	1586
Eco47I	GGWCC	6 cut(s)	140, 287, 698, 1023, 1908, 2210
Eco57I	CTGAAG	2 cut(s)	731, 1851
Eco72I	CACGTG	1 cut(s)	1052
Eco81I	CCTNAGG	2 cut(s)	967, 2112
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	698, 2210
EcoRII	CCWGG	4 cut(s)	136, 393, 429, 2097
EcoT14I	CCWWGG	5 cut(s)	624, 1288, 1329, 1911, 2234
EcoT22I	ATGCAT	3 cut(s)	978, 1680, 2638
EcoT38I	GRGCYC	1 cut(s)	1586
ErhI	CCWWGG	5 cut(s)	624, 1288, 1329, 1911, 2234
FaeI	CATG	8 cut(s)	628, 980, 1112, 1154, 1512, 1915, 1998, 2540
FalI	AAGNNNNNCTT	6 cut(s)	564, 596, 567, 599, 2258, 2290
FaqI	GGGAC	2 cut(s)	1516, 2196
FatI	CATG	8 cut(s)	624, 976, 1108, 1150, 1508, 1911, 1994, 2536
FauNDI	CATATG	3 cut(s)	105, 2083, 2649
FblI	GTMKAC	1 cut(s)	2118
Fnu4HI	GCNGC	2 cut(s)	1513, 2577
FokI	GGATG	6 cut(s)	985, 1154, 1229, 1292, 2293, 2423
FriOI	GRGCYC	1 cut(s)	1586
Fsp4HI	GCNGC	2 cut(s)	1513, 2577
FspAI	RTGCGCAY	1 cut(s)	452
FspBI	CTAG	7 cut(s)	381, 1757, 1928, 1941, 1970, 2091, 2465
FspI	TGCGCA	1 cut(s)	452
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	1513, 2577
GsuI	CTGGAG	3 cut(s)	872, 2120, 2529
HaeIII	GGCC	3 cut(s)	482, 1256, 1631
HapII	CCGG	4 cut(s)	69, 693, 1214, 1258
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	8 cut(s)	628, 980, 1112, 1154, 1512, 1915, 1998, 2540
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	1305
HindII	GTYRAC	1 cut(s)	1305
HindIII	AAGCTT	1 cut(s)	1835
HpaII	CCGG	4 cut(s)	69, 693, 1214, 1258
HphI	GGTGA	6 cut(s)	203, 992, 1013, 1417, 1433, 1952
Hpy166II	GTNNAC	6 cut(s)	352, 805, 1305, 1449, 1700, 2119
Hpy8I	GTNNAC	6 cut(s)	352, 805, 1305, 1449, 1700, 2119
Hpy99I	CGWCG	1 cut(s)	1686
HpyAV	CCTTC	6 cut(s)	439, 1389, 1544, 1596, 1708, 2188
HpyCH4III	ACNGT	8 cut(s)	661, 1387, 1405, 1411, 1453, 2354, 2421, 2534
HpyCH4IV	ACGT	4 cut(s)	542, 801, 1051, 1621
HpyF10VI	GCNNNNNNNGC	5 cut(s)	982, 1052, 1079, 1684, 2238
HpySE526I	ACGT	4 cut(s)	542, 801, 1051, 1621
Hsp92II	CATG	8 cut(s)	628, 980, 1112, 1154, 1512, 1915, 1998, 2540
HspAI	GCGC	1 cut(s)	451
KflI	GGGWCCC	1 cut(s)	2210
Kpn2I	TCCGGA	1 cut(s)	1213
KpnI	GGTACC	1 cut(s)	2521
Kzo9I	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	5 cut(s)	433, 547, 1051, 1087, 2245
Lsp1109I	GCAGC	2 cut(s)	1499, 2563
LweI	GCATC	6 cut(s)	782, 963, 1687, 1946, 2623, 2645
MaeI	CTAG	7 cut(s)	381, 1757, 1928, 1941, 1970, 2091, 2465
MaeII	ACGT	4 cut(s)	542, 801, 1051, 1621
MaeIII	GTNAC	8 cut(s)	655, 1387, 1405, 1453, 1747, 1988, 2093, 2359
MalI	GATC	9 cut(s)	111, 195, 570, 950, 1350, 1470, 1485, 1707, 2614
MboI	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
MfeI	CAATTG	3 cut(s)	144, 687, 1041
MflI	RGATCY	3 cut(s)	109, 1483, 1705
MhlI	GDGCHC	3 cut(s)	1586, 1702, 2478
MlyI	GAGTC	2 cut(s)	1106, 2638
MmeI	TCCRAC	2 cut(s)	525, 1220
Mph1103I	ATGCAT	3 cut(s)	978, 1680, 2638
MroI	TCCGGA	1 cut(s)	1213
MroXI	GAANNNNTTC	4 cut(s)	579, 607, 1533, 2315
MslI	CAYNNNNRTG	2 cut(s)	2457, 2526
MspCI	CTTAAG	2 cut(s)	365, 760
MspI	CCGG	4 cut(s)	69, 693, 1214, 1258
MspR9I	CCNGG	6 cut(s)	138, 395, 431, 694, 1258, 2099
MunI	CAATTG	3 cut(s)	144, 687, 1041
Mva1269I	GAATGC	4 cut(s)	216, 532, 1055, 2186
MvaI	CCWGG	4 cut(s)	138, 395, 431, 2099
MwoI	GCNNNNNNNGC	5 cut(s)	982, 1052, 1079, 1684, 2238
NciI	CCSGG	2 cut(s)	694, 1258
NcoI	CCATGG	2 cut(s)	624, 1911
NdeI	CATATG	3 cut(s)	105, 2083, 2649
NdeII	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
NlaIII	CATG	8 cut(s)	628, 980, 1112, 1154, 1512, 1915, 1998, 2540
NlaIV	GGNNCC	7 cut(s)	67, 699, 1371, 1707, 2211, 2212, 2519
NmuCI	GTSAC	3 cut(s)	1405, 1988, 2359
NsbI	TGCGCA	1 cut(s)	452
NsiI	ATGCAT	3 cut(s)	978, 1680, 2638
NspI	RCATGY	2 cut(s)	1512, 1998
NspV	TTCGAA	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	1512
PaeR7I	CTCGAG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	539, 1567
PctI	GAATGC	4 cut(s)	216, 532, 1055, 2186
PdmI	GAANNNNTTC	4 cut(s)	579, 607, 1533, 2315
PflFI	GACNNNGTC	2 cut(s)	233, 1431
PflMI	CCANNNNNTGG	2 cut(s)	106, 544
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	1514, 2578
PleI	GAGTC	2 cut(s)	1106, 2638
PmaCI	CACGTG	1 cut(s)	1052
PmlI	CACGTG	1 cut(s)	1052
PpsI	GAGTC	2 cut(s)	1106, 2638
Ppu21I	YACGTR	1 cut(s)	1052
PpuMI	RGGWCCY	2 cut(s)	698, 2210
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	2 cut(s)	732, 1101
Psp1406I	AACGTT	1 cut(s)	542
Psp5II	RGGWCCY	2 cut(s)	698, 2210
Psp6I	CCWGG	4 cut(s)	136, 393, 429, 2097
PspCI	CACGTG	1 cut(s)	1052
PspGI	CCWGG	4 cut(s)	136, 393, 429, 2097
PspN4I	GGNNCC	7 cut(s)	67, 699, 1371, 1707, 2211, 2212, 2519
PspPI	GGNCC	7 cut(s)	140, 287, 698, 1023, 1255, 1908, 2210
PspPPI	RGGWCCY	2 cut(s)	698, 2210
PstNI	CAGNNNCTG	1 cut(s)	1874
PsuI	RGATCY	3 cut(s)	109, 1483, 1705
PsyI	GACNNNGTC	2 cut(s)	233, 1431
RsaI	GTAC	6 cut(s)	1361, 1413, 1448, 1846, 2228, 2519
RsaNI	GTAC	6 cut(s)	1360, 1412, 1447, 1845, 2227, 2518
RseI	CAYNNNNRTG	2 cut(s)	2457, 2526
SapI	GCTCTTC	1 cut(s)	216
SatI	GCNGC	2 cut(s)	1513, 2577
Sau3AI	GATC	9 cut(s)	109, 193, 568, 948, 1348, 1468, 1483, 1705, 2612
Sau96I	GGNCC	7 cut(s)	140, 287, 698, 1023, 1255, 1908, 2210
SchI	GAGTC	2 cut(s)	1106, 2638
ScrFI	CCNGG	6 cut(s)	138, 395, 431, 694, 1258, 2099
SduI	GDGCHC	3 cut(s)	1586, 1702, 2478
SfaNI	GCATC	6 cut(s)	782, 963, 1687, 1946, 2623, 2645
SfcI	CTRYAG	2 cut(s)	197, 660
Sfr274I	CTCGAG	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	6 cut(s)	140, 287, 698, 1023, 1908, 2210
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	2457, 2526
SmlI	CTYRAG	7 cut(s)	17, 37, 246, 365, 584, 760, 2006
SmoI	CTYRAG	7 cut(s)	17, 37, 246, 365, 584, 760, 2006
SpeI	ACTAGT	1 cut(s)	2090
SphI	GCATGC	1 cut(s)	1512
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	2041
SspMI	CTAG	7 cut(s)	381, 1757, 1928, 1941, 1970, 2091, 2465
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	6 cut(s)	136, 393, 429, 692, 1256, 2097
StyI	CCWWGG	5 cut(s)	624, 1288, 1329, 1911, 2234
TaaI	ACNGT	8 cut(s)	661, 1387, 1405, 1411, 1453, 2354, 2421, 2534
TaiI	ACGT	4 cut(s)	545, 804, 1054, 1624
TaqII	GACCGA	1 cut(s)	1383
TatI	WGTACW	3 cut(s)	1359, 1411, 1844
TscAI	CASTG	5 cut(s)	896, 1456, 1707, 2488, 2557
TseFI	GTSAC	3 cut(s)	1405, 1988, 2359
TseI	GCWGC	2 cut(s)	1512, 2576
Tsp45I	GTSAC	3 cut(s)	1405, 1988, 2359
TspRI	CASTG	5 cut(s)	896, 1456, 1707, 2488, 2557
Tth111I	GACNNNGTC	2 cut(s)	233, 1431
Van91I	CCANNNNNTGG	2 cut(s)	106, 544
Vha464I	CTTAAG	2 cut(s)	365, 760
VneI	GTGCAC	1 cut(s)	1698
VpaK11BI	GGWCC	6 cut(s)	140, 287, 698, 1023, 1908, 2210
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	3 cut(s)	334, 618, 1563
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	2 cut(s)	1512, 1998
XhoI	CTCGAG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	2118
XmnI	GAANNNNTTC	4 cut(s)	579, 607, 1533, 2315
XspI	CTAG	7 cut(s)	381, 1757, 1928, 1941, 1970, 2091, 2465
Zsp2I	ATGCAT	3 cut(s)	978, 1680, 2638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.