Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008640.1

Orthogroup ID

OG0005739

Physical Location & Seq

Genomic Coordinates Reverse (-)

11412 .. 12502

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008640.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggacaatacagaactagaggaagcatctagcagggagttatcctttcacctatttctagcccttgatgaaaggggtcacacatgcaagccacttgagaagttttcttccttaaagtccggtaaaaatattaaggtttttctggactggactgagaaagaagatgaatcatatgatgctagttacctggagaatctacctgaggtacacaagtccggtaatactgcaaagaaaactcgacaagaagctatttccttatttacttgcttagaggcattcttgaaggaagaacctttgggtccctcggatatgtggtactgcccaaggtgcaaggagcatagacaggctaccaagaagctggacttgtggatgttgccagaggttctggtttttcacttgaaacgattctcatacagcagatactcgaagaacaaactcgacagttttgtgacttttccaattcataatcttgatttgagtagatatgtgatgagcaaggatgggaaaccgtatatatatgagctatacgccattagcaaccattatggtggtctaggtggtgggcactacactgcatatgcgaagttgattgatgagaacagatggtaccatttcgatgacagtcatgtttctccagtcagtgaaagcgacatcaagacttcggctgcgtatgtgcttttttatcgaagagttaaaagtggatcaaatacaggagagggcgatgcatcagagactcatatggcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH

Protein Analysis

249

Amino Acids

28.71

Weight (kDa)

6.13

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32850 AT4G10570 AT4G10590 AT4G10590 AT4G10590 AT4G10590
fragaria_vesca	FvH4_5g10610 FvH4_5g10610 FvH4_5g10610
malus_domestica	MD06G1121900.v1.1 MD14G1138300.v1.1
prunus_persica	Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1
pyrus_communis	pycom06g11300 pycom14g11340
rosa_chinensis	RchiOBHm_Chr7g0187531
rosa_laevigata	RLG00000004773
rosa_multiflora	Rmu_sc0008640.1_g000004 Rmu_sc0014966.1_g000001 Rmu_sc0023622.1_g000001 Rmu_ssc0000110.1_g000024
rosa_roxburghii	Rroxscaffold_3G00267350
rosa_rugosa	Rorug06G0482500
rosa_samantha	Rh7AG087100 Rh7BG088500 Rh7CG087800 Rh7DG089400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	606
AclWI	GGATC	1 cut(s)	709
AfaI	GTAC	3 cut(s)	207, 317, 608
AgsI	TTSAA	2 cut(s)	283, 400
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	248, 358, 523
AluI	AGCT	3 cut(s)	248, 358, 523
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	567
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	2 cut(s)	494, 597
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	5 cut(s)	17, 30, 59, 180, 554
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	3 cut(s)	300, 301, 608
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	4 cut(s)	35, 166, 712, 734
BpmI	CTGGAG	2 cut(s)	209, 618
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	303, 323
BsaWI	WCCGGW	2 cut(s)	119, 215
Bse1I	ACTGG	2 cut(s)	152, 635
Bse21I	CCTNAGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	303, 323
BseGI	GGATG	2 cut(s)	375, 505
BseMII	CTCAG	2 cut(s)	144, 192
BseNI	ACTGG	2 cut(s)	152, 635
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	652
BshNI	GGYRCC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	120, 216
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	701
BspCNI	CTCAG	2 cut(s)	145, 193
BspLI	GGNNCC	3 cut(s)	300, 301, 608
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	152, 635
BssECI	CCNNGG	2 cut(s)	303, 323
BssMI	GATC	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	443, 510, 623
Bst6I	CTCTTC	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	153, 201, 268
BstF5I	GGATG	2 cut(s)	375, 505
BstKTI	GATC	1 cut(s)	704
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	1 cut(s)	701
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	652
BstXI	CCANNNNNNTGG	2 cut(s)	358, 548
Bsu36I	CCTNAGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	375, 505
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	570, 646
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	206, 316, 607
CviAII	CATG	2 cut(s)	84, 626
CviJI	RGCY	8 cut(s)	62, 91, 248, 347, 358, 523, 665, 743
CviKI_1	RGCY	8 cut(s)	62, 91, 248, 347, 358, 523, 665, 743
CviQI	GTAC	3 cut(s)	206, 316, 607
DdeI	CTNAG	3 cut(s)	153, 201, 268
DpnI	GATC	1 cut(s)	703
DpnII	GATC	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	87, 629
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	83, 625
FauNDI	CATATG	3 cut(s)	172, 577, 738
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	2 cut(s)	382, 512
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	5 cut(s)	17, 30, 59, 180, 554
GluI	GCNGC	1 cut(s)	666
GsuI	CTGGAG	2 cut(s)	209, 618
HapII	CCGG	2 cut(s)	120, 216
Hin1II	CATG	2 cut(s)	87, 629
HinfI	GANTC	4 cut(s)	167, 193, 405, 733
HpaII	CCGG	2 cut(s)	120, 216
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	307, 730
Hpy188III	TCNNGA	5 cut(s)	143, 280, 470, 655, 747
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	443, 510, 623
HpyCH4V	TGCA	5 cut(s)	87, 227, 330, 575, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	3 cut(s)	153, 201, 268
Hsp92II	CATG	2 cut(s)	87, 629
KflI	GGGWCCC	1 cut(s)	299
KpnI	GGTACC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	701
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	4 cut(s)	35, 166, 712, 734
MaeI	CTAG	5 cut(s)	17, 30, 59, 180, 554
MaeIII	GTNAC	3 cut(s)	77, 182, 448
MalI	GATC	1 cut(s)	703
MboI	GATC	1 cut(s)	701
MboII	GAAGA	5 cut(s)	99, 173, 299, 439, 699
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	727
MnlI	CCTC	6 cut(s)	13, 196, 265, 313, 373, 709
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	3 cut(s)	113, 132, 693
MslI	CAYNNNNRTG	2 cut(s)	546, 615
MspI	CCGG	2 cut(s)	120, 216
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeI	CATATG	3 cut(s)	172, 577, 738
NdeII	GATC	1 cut(s)	701
NlaIII	CATG	2 cut(s)	87, 629
NlaIV	GGNNCC	3 cut(s)	300, 301, 608
NmuCI	GTSAC	2 cut(s)	77, 448
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	87
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	3 cut(s)	167, 193, 405
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	300, 301, 608
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
RsaI	GTAC	3 cut(s)	207, 317, 608
RsaNI	GTAC	3 cut(s)	206, 316, 607
RseI	CAYNNNNRTG	2 cut(s)	546, 615
SaqAI	TTAA	3 cut(s)	113, 132, 693
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	1 cut(s)	701
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	4 cut(s)	35, 166, 712, 734
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	546, 615
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	459
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	5 cut(s)	17, 30, 59, 180, 554
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	443, 510, 623
TaqI	TCGA	5 cut(s)	238, 425, 438, 615, 685
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	167, 193, 405
Tru1I	TTAA	3 cut(s)	113, 132, 693
Tru9I	TTAA	3 cut(s)	113, 132, 693
TscAI	CASTG	2 cut(s)	577, 646
TseFI	GTSAC	2 cut(s)	77, 448
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	2 cut(s)	77, 448
TspDTI	ATGAA	3 cut(s)	84, 180, 452
TspRI	CASTG	2 cut(s)	577, 646
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	5 cut(s)	17, 30, 59, 180, 554
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.