Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005739

Physical Location & Seq

Genomic Coordinates Forward (+)

7509653 .. 7516670

Gene Structure 7018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

ATGAGGGTTCCGGAAGAGCGGATCTACGGGACAGCGGCTCTCGCTTGCCTTGCAAGATCGGAATACAAGGCTTCCTCTCACATTTCTCTCTTCTCTGCTCCGCGATCTCTTCCCTTCCAAGGTTTGTTTGAAACGTCGTCGTCAATTATGACGATTCCGGATTCAGGTTTCATGATGGAGAACGAGGCGAGCTGCTTACCGCACACACCGGAGGAGGAGAAGCGGATCATTGACGAATTGACCCGCCAATCCGAAGCCAATGTTAAAGAAGGCAACTTGTTCTACGTTATTTCTAACAGGTGGTTCTCAAGCTGGAAGATGTATGTTGAACAAGGCACCGGAGAGAATGATAAGTGGGATTCTGAATCCCAACATATGGATCTGCTTTCTTCAAAAATTAACAGACCTGGACCAATTGATAATTCTGATATAGTTGAAAAAGAATCCGAGGGAGGTGGAGGTGATCTACAGCTTCGTAGAATGCTGATGGAAGAGCTTGACTATGTCTTAGTTTCTCAAGAAGTTTGGGAAAAGCTATTTGATTGGTATAAAGGAGGTCCATCATTACCAAGAAAGATGATTTCTCAGGGCGGCATTAATAAGAATTTGATGGTGGAGGTTTACCCATTGTGTCTTAAGATTGTTGATTCTAGAGACAACAGCCAGGCAGTTATCTGGTTAAGCAAAAAGGCTTCTGTCCAGGAGCTTTACGAGAAGGTGCACACAATTAGAGGAATTGAGCAACAAAAGGCCTGTATCTGGGATTACTTCAACAAGCAGAAGCAGTCATTATTGAATGCTTCGAACCAAACGTTGGAGCAGTTGAACTTGCAGATGGATCAAGATGTTCTTCTTGAGGTGCAAGTTGATGGAAACTATTCCTCCCAAATTTCCATGGATTCAACTGGAAATGAGTTAGCATTGGTAACTGTAGAACCATCAAGGTCATCGATGACAATTGCCGGGGGTCCTACTTTGTCGAATGGTCATTCGATGGGTTATAATAATAATTTGCTTCAGGGAAGCACCTTAAGTGGCTCAGCATCAACAGATACAGATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGAGATAAGGGAGGTTTGGCAGGATTGCAGAATCTCGGAAATACTTGCTTTATGAATAGTTCCCTCCAGTGCTTAGTCCATACACCCCCTCTTGTTGATTATTTTTTGCAAGATTACTCTGATGAGATCAACACAGACAATCCCTTAGGGATGCATGGTGAGCTTGCTCTTGCCTTTGGTGAGCTGTTGAGGAAATTGTGGTCCTCTGGGAGAACAACAATTGCTCCACGTGCATTCAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTTAGTGGTTATAATCAGCATGACTCTCAGGAACTTCTTGCTTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTCAAAAATAAGCCCTACATTGAAACAAAGGATTCAGATGGTCGTCCGGATGAGGAAGTTGCAGATGAGTGTTGGAAAAATCACAAGGCCCGGAATGATTCATTGATTGTGGATGTTTGCCAAGGTCAATATAAGTCAACTTTGGTATGCCCGTCTTGTGCCAAGGTTTCAATTACCTTTGATCCTTTTATGTACTTATCGGTGCCACTACCTTCAACTGTTACTCGGTCAATGACGGTGACTGTACTTTATGGTGATGGACGGGGTCTTCCAATGCCGTACACTGTAACCTTGATAAAAGATCGCTCCGTTAAAGATCTTGTTGAGGCATTGGGGACTGCATGCTGCTTGAAGAGTGATGAAAGCCTTCTGCTTGCTGAGATATACGAGCATCGAATTTATCGATATTTGGAGAGCCCTTCTGAGCACTTGTCTTCAATTAAGCCTGATGAACGTATTGTGGCCTATCGGTATTCTAAAGGGGCAGGAACAACCAGACTTGAAATAATGCATCGACGGCAGGAAAAATGTGCATTGGATCCTTTGAAGGGTCAGAGAAAACTTTTTGGAACACCTTTGGTTACTTATCTAGGAGAAGACCAAATAAATGGAGTTGATATTGAAAGAGCTGTTTCTACATCTCTGTCCCCTTTGAGGAGAGCTGTTAAGCTTCATAGTACAAAAGAAAATGGCTCAACTTCAGAAGCTGTTGATGAACCATCAAACAGCTACAATTTGAGGTCCATGGACAATACAGAACTAGAGGAAGCATCTAGCAGGGAGTTATCCTTTCACCTATTTCTAGCCCTTGATGAAAGGGGTCACACATGCAAGCCACTTGAGAAGTTTTCTTCCTTAAAGTCTGGTAAAAATATTAAGGTTTTTCTGGACTGGACTGAGAAAGAAGATGAATCATATGATGCTAGTTACCTGGAGAATCTACCTGAGGTACACAAGTCCGGTAATACTGCAAAGAAAACTCGACAAGAAGCTATTTCCTTATTTACTTGCTTAGAGGCATTCTTGAAGGAAGAACCTTTGGGTCCCTCGGATATGTGGTACTGCCCAAGGTGCAAGGAGCATAGACAGGCTACCAAGAAGCTGGACTTGTGGATGTTGCCAGAGGTTCTGGTTTTTCACTTGAAACGATTCTCATACAGCAGATACTCGAAGAACAAACTCGACAGTTTTGTGACTTTTCCAATTCATAATCTTGATTTGAGTAGATATGTGATGAGCAAGGATGGGAAACCGTATATATATGAGCTATACGCCATTAGCAACCATTATGGTGGTCTAGGTGGTGGGCACTACACTGCATATGCGAAGTTGATTGATGAGAACAGATGGTACCATTTCGATGACAGTCATGTTTCTCCAGTCAGTGAAAGCGACATCAAGACTTCGGCTGCCTATGTGCTTTTTTATCGAAGAGTTAAAAGTGGATCAAATACAGGAGAGGGCGATGCATCAGAGACTCATATGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH

Protein Analysis

976

Amino Acids

110.12

Weight (kDa)

5.61

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	92 - 194	8.4e-22	DUSP domain
UCH	PF00443	371 - 955	1.5e-77	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	371 - 547	7.7e-06	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32850 AT4G10570 AT4G10590 AT4G10590 AT4G10590 AT4G10590
fragaria_vesca	FvH4_5g10610 FvH4_5g10610 FvH4_5g10610
malus_domestica	MD06G1121900.v1.1 MD14G1138300.v1.1
prunus_persica	Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1 Prupe.5G132600_v2.0.a1
pyrus_communis	pycom06g11300 pycom14g11340
rosa_chinensis	RchiOBHm_Chr7g0187531
rosa_laevigata	RLG00000004773
rosa_multiflora	Rmu_sc0008640.1_g000004 Rmu_sc0014966.1_g000001 Rmu_sc0023622.1_g000001 Rmu_ssc0000110.1_g000024
rosa_roxburghii	Rroxscaffold_3G00267350
rosa_rugosa	Rorug06G0482500
rosa_samantha	Rh7AG087100 Rh7BG088500 Rh7CG087800 Rh7DG089400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1002, 1371
Acc65I	GGTACC	1 cut(s)	2787
AccB1I	GGYRCC	3 cut(s)	335, 1639, 2787
AccB7I	CCANNNNNTGG	2 cut(s)	376, 814
AccBSI	CCGCTC	1 cut(s)	19
AccII	CGCG	1 cut(s)	103
AccIII	TCCGGA	3 cut(s)	10, 157, 1483
AciI	CCGC	7 cut(s)	19, 35, 101, 200, 223, 244, 591
AclI	AACGTT	1 cut(s)	812
AclWI	GGATC	8 cut(s)	29, 233, 387, 846, 1613, 1970, 1983, 2890
AcsI	RAATTY	3 cut(s)	604, 888, 1833
AcuI	CTGAAG	2 cut(s)	1001, 2121
AcvI	CACGTG	1 cut(s)	1322
AfaI	GTAC	7 cut(s)	1631, 1683, 1718, 2116, 2388, 2498, 2789
AfiI	CCNNNNNNNGG	7 cut(s)	119, 164, 376, 759, 814, 1985, 2091
AflII	CTTAAG	2 cut(s)	635, 1030
AjnI	CCWGG	4 cut(s)	406, 663, 699, 2367
AjuI	GAANNNNNNNTTGG	4 cut(s)	406, 438, 797, 829
Alw21I	GWGCWC	2 cut(s)	723, 1866
Alw26I	GTCTC	2 cut(s)	648, 2906
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	8 cut(s)	29, 233, 387, 846, 1613, 1970, 1983, 2890
AlwNI	CAGNNNCTG	1 cut(s)	2144
Aor13HI	TCCGGA	3 cut(s)	10, 157, 1483
AoxI	GGCC	3 cut(s)	750, 1524, 1899
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	192, 1782, 2846
ApoI	RAATTY	3 cut(s)	604, 888, 1833
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	3 cut(s)	877, 1803, 2585
Asp718I	GGTACC	1 cut(s)	2787
AspS9I	GGNCC	7 cut(s)	410, 557, 968, 1293, 1525, 2178, 2480
AsuC2I	CCSGG	2 cut(s)	964, 1528
AsuHPI	GGTGA	6 cut(s)	473, 1262, 1283, 1687, 1703, 2222
AsuII	TTCGAA	1 cut(s)	803
AvaII	GGWCC	6 cut(s)	410, 557, 968, 1293, 2178, 2480
AxyI	CCTNAGG	2 cut(s)	1237, 2382
BaeGI	GKGCMC	2 cut(s)	723, 2748
BaeI	ACNNNNGTAYC	2 cut(s)	2378, 2411
BamHI	GGATCC	1 cut(s)	1975
BanI	GGYRCC	3 cut(s)	335, 1639, 2787
BanII	GRGCYC	1 cut(s)	1856
BbrPI	CACGTG	1 cut(s)	1322
BbsI	GAAGAC	3 cut(s)	1697, 1863, 2040
Bbv12I	GWGCWC	2 cut(s)	723, 1866
BbvI	GCAGC	3 cut(s)	179, 1769, 2833
BceAI	ACGGC	2 cut(s)	1699, 1970
BciT130I	CCWGG	4 cut(s)	408, 665, 701, 2369
BcnI	CCSGG	2 cut(s)	964, 1528
BcoDI	GTCTC	2 cut(s)	648, 2906
BfaI	CTAG	7 cut(s)	651, 2027, 2198, 2211, 2240, 2361, 2735
BfmI	CTRYAG	2 cut(s)	467, 930
BfrI	CTTAAG	2 cut(s)	635, 1030
BglII	AGATCT	1 cut(s)	1753
BisI	GCNGC	5 cut(s)	36, 193, 592, 1783, 2847
BlpI	GCTNAGC	1 cut(s)	1039
BlsI	GCNGC	5 cut(s)	37, 194, 593, 1784, 2848
Bme1390I	CCNGG	6 cut(s)	408, 665, 701, 964, 1528, 2369
Bme18I	GGWCC	6 cut(s)	410, 557, 968, 1293, 2178, 2480
BmgT120I	GGNCC	7 cut(s)	410, 557, 968, 1293, 1525, 2178, 2480
BmiI	GGNNCC	8 cut(s)	9, 337, 969, 1641, 1977, 2481, 2482, 2789
BmrFI	CCNGG	6 cut(s)	408, 665, 701, 964, 1528, 2369
BmsI	GCATC	8 cut(s)	1052, 1233, 1837, 1957, 2216, 2347, 2893, 2915
BpiI	GAAGAC	3 cut(s)	1697, 1863, 2040
BpmI	CTGGAG	3 cut(s)	1142, 2390, 2799
Bpu1102I	GCTNAGC	1 cut(s)	1039
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	4 cut(s)	292, 501, 875, 2297
BpuMI	CCSGG	2 cut(s)	964, 1528
Bsa29I	ATCGAT	2 cut(s)	950, 1840
BsaAI	YACGTR	1 cut(s)	1322
BsaBI	GATNNNNATC	1 cut(s)	1431
BsaJI	CCNNGG	9 cut(s)	118, 447, 894, 963, 1558, 1599, 2181, 2484, 2504
BsaWI	WCCGGW	6 cut(s)	10, 157, 208, 338, 1483, 2396
BsaXI	ACNNNNNCTCC	4 cut(s)	866, 896, 1300, 1330
Bsc4I	CCNNNNNNNGG	7 cut(s)	119, 164, 376, 759, 814, 1985, 2091
Bse1I	ACTGG	5 cut(s)	910, 1159, 1413, 2333, 2816
Bse21I	CCTNAGG	2 cut(s)	1237, 2382
Bse8I	GATNNNNATC	1 cut(s)	1431
BseAI	TCCGGA	3 cut(s)	10, 157, 1483
BseBI	CCWGG	4 cut(s)	408, 665, 701, 2369
BseCI	ATCGAT	2 cut(s)	950, 1840
BseDI	CCNNGG	9 cut(s)	118, 447, 894, 963, 1558, 1599, 2181, 2484, 2504
BseGI	GGATG	6 cut(s)	1248, 1417, 1492, 1555, 2556, 2686
BseJI	GATNNNNATC	1 cut(s)	1431
BseLI	CCNNNNNNNGG	7 cut(s)	119, 164, 376, 759, 814, 1985, 2091
BseMII	CTCAG	8 cut(s)	599, 1053, 1370, 1400, 1806, 1851, 2325, 2373
BseNI	ACTGG	5 cut(s)	910, 1159, 1413, 2333, 2816
BseRI	GAGGAG	4 cut(s)	227, 230, 1344, 2107
BseSI	GKGCMC	2 cut(s)	723, 2748
BseXI	GCAGC	3 cut(s)	179, 1769, 2833
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	752, 1526, 1901
BshNI	GGYRCC	3 cut(s)	335, 1639, 2787
BshVI	ATCGAT	2 cut(s)	950, 1840
BsiHKAI	GWGCWC	2 cut(s)	723, 1866
BsiSI	CCGG	8 cut(s)	11, 158, 209, 339, 963, 1484, 1528, 2397
BslFI	GGGAC	4 cut(s)	43, 1786, 2068, 2466
BslI	CCNNNNNNNGG	7 cut(s)	119, 164, 376, 759, 814, 1985, 2091
BsmAI	GTCTC	2 cut(s)	648, 2906
BsmFI	GGGAC	4 cut(s)	43, 1786, 2068, 2466
BsmI	GAATGC	4 cut(s)	486, 802, 1325, 2456
BsnI	GGCC	3 cut(s)	752, 1526, 1901
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	4 cut(s)	723, 1856, 1866, 2748
Bsp13I	TCCGGA	3 cut(s)	10, 157, 1483
Bsp1720I	GCTNAGC	1 cut(s)	1039
Bsp19I	CCATGG	2 cut(s)	894, 2181
BspACI	CCGC	7 cut(s)	19, 35, 101, 200, 223, 244, 591
BspANI	GGCC	3 cut(s)	752, 1526, 1901
BspCNI	CTCAG	8 cut(s)	598, 1052, 1369, 1399, 1807, 1852, 2326, 2374
BspDI	ATCGAT	2 cut(s)	950, 1840
BspEI	TCCGGA	3 cut(s)	10, 157, 1483
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	8 cut(s)	9, 337, 969, 1641, 1977, 2481, 2482, 2789
BspPI	GGATC	8 cut(s)	29, 233, 387, 846, 1613, 1970, 1983, 2890
BspQI	GCTCTTC	2 cut(s)	9, 486
BspT104I	TTCGAA	1 cut(s)	803
BspT107I	GGYRCC	3 cut(s)	335, 1639, 2787
BspTI	CTTAAG	2 cut(s)	635, 1030
BsrBI	CCGCTC	1 cut(s)	19
BsrI	ACTGG	5 cut(s)	910, 1159, 1413, 2333, 2816
BssECI	CCNNGG	9 cut(s)	118, 447, 894, 963, 1558, 1599, 2181, 2484, 2504
BssT1I	CCWWGG	6 cut(s)	118, 894, 1558, 1599, 2181, 2504
Bst2UI	CCWGG	4 cut(s)	408, 665, 701, 2369
Bst4CI	ACNGT	8 cut(s)	931, 1657, 1675, 1681, 1723, 2624, 2691, 2804
Bst6I	CTCTTC	6 cut(s)	9, 95, 114, 486, 1784, 2863
BstAFI	CTTAAG	2 cut(s)	635, 1030
BstBAI	YACGTR	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	6 cut(s)	46, 190, 1257, 1780, 1812, 2270
BstDSI	CCRYGG	2 cut(s)	894, 2181
BstF5I	GGATG	6 cut(s)	1248, 1417, 1492, 1555, 2556, 2686
BstFNI	CGCG	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	648, 2906
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 50, 1252, 1322, 1349, 1954, 2508
BstNI	CCWGG	4 cut(s)	408, 665, 701, 2369
BstNSI	RCATGY	2 cut(s)	1782, 2268
BstSCI	CCNGG	6 cut(s)	406, 663, 699, 962, 1526, 2367
BstSFI	CTRYAG	2 cut(s)	467, 930
BstSLI	GKGCMC	2 cut(s)	723, 2748
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	179, 1769, 2833
BstV2I	GAAGAC	3 cut(s)	1697, 1863, 2040
BstX2I	RGATCY	4 cut(s)	21, 379, 1753, 1975
BstXI	CCANNNNNNTGG	3 cut(s)	2045, 2539, 2729
BstYI	RGATCY	4 cut(s)	21, 379, 1753, 1975
Bsu15I	ATCGAT	2 cut(s)	950, 1840
Bsu36I	CCTNAGG	2 cut(s)	1237, 2382
BsuRI	GGCC	3 cut(s)	752, 1526, 1901
BsuTUI	ATCGAT	2 cut(s)	950, 1840
BtgI	CCRYGG	2 cut(s)	894, 2181
BtgZI	GCGATG	1 cut(s)	2916
BtsCI	GGATG	6 cut(s)	1248, 1417, 1492, 1555, 2556, 2686
BtsI	GCAGTG	1 cut(s)	2751
BtsIMutI	CAGTG	4 cut(s)	1166, 1719, 2751, 2827
Cac8I	GCNNGC	6 cut(s)	46, 190, 1257, 1780, 1812, 2270
CaiI	CAGNNNCTG	1 cut(s)	2144
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	7 cut(s)	410, 557, 968, 1293, 1525, 2178, 2480
ClaI	ATCGAT	2 cut(s)	950, 1840
Csp6I	GTAC	7 cut(s)	1630, 1682, 1717, 2115, 2387, 2497, 2788
CviAII	CATG	9 cut(s)	172, 895, 1247, 1379, 1421, 1779, 2182, 2265, 2807
CviQI	GTAC	7 cut(s)	1630, 1682, 1717, 2115, 2387, 2497, 2788
Eam1104I	CTCTTC	6 cut(s)	9, 95, 114, 486, 1784, 2863
EarI	CTCTTC	6 cut(s)	9, 95, 114, 486, 1784, 2863
Eco130I	CCWWGG	6 cut(s)	118, 894, 1558, 1599, 2181, 2504
Eco147I	AGGCCT	1 cut(s)	752
Eco24I	GRGCYC	1 cut(s)	1856
Eco47I	GGWCC	6 cut(s)	410, 557, 968, 1293, 2178, 2480
Eco57I	CTGAAG	2 cut(s)	1001, 2121
Eco72I	CACGTG	1 cut(s)	1322
Eco81I	CCTNAGG	2 cut(s)	1237, 2382
EcoO109I	RGGNCCY	2 cut(s)	968, 2480
EcoRII	CCWGG	4 cut(s)	406, 663, 699, 2367
EcoT14I	CCWWGG	6 cut(s)	118, 894, 1558, 1599, 2181, 2504
EcoT22I	ATGCAT	3 cut(s)	1248, 1950, 2908
EcoT38I	GRGCYC	1 cut(s)	1856
ErhI	CCWWGG	6 cut(s)	118, 894, 1558, 1599, 2181, 2504
FaeI	CATG	9 cut(s)	175, 898, 1250, 1382, 1424, 1782, 2185, 2268, 2810
FalI	AAGNNNNNCTT	4 cut(s)	834, 866, 2528, 2560
FaqI	GGGAC	4 cut(s)	43, 1786, 2068, 2466
FatI	CATG	9 cut(s)	171, 894, 1246, 1378, 1420, 1778, 2181, 2264, 2806
FauI	CCCGC	1 cut(s)	251
FauNDI	CATATG	4 cut(s)	375, 2353, 2758, 2919
Fnu4HI	GCNGC	5 cut(s)	36, 193, 592, 1783, 2847
FokI	GGATG	6 cut(s)	1255, 1424, 1499, 1562, 2563, 2693
FriOI	GRGCYC	1 cut(s)	1856
Fsp4HI	GCNGC	5 cut(s)	36, 193, 592, 1783, 2847
FspBI	CTAG	7 cut(s)	651, 2027, 2198, 2211, 2240, 2361, 2735
GluI	GCNGC	5 cut(s)	36, 193, 592, 1783, 2847
GsuI	CTGGAG	3 cut(s)	1142, 2390, 2799
HaeIII	GGCC	3 cut(s)	752, 1526, 1901
HapII	CCGG	8 cut(s)	11, 158, 209, 339, 963, 1484, 1528, 2397
Hin1II	CATG	9 cut(s)	175, 898, 1250, 1382, 1424, 1782, 2185, 2268, 2810
HincII	GTYRAC	1 cut(s)	1575
HindII	GTYRAC	1 cut(s)	1575
HindIII	AAGCTT	1 cut(s)	2105
HpaII	CCGG	8 cut(s)	11, 158, 209, 339, 963, 1484, 1528, 2397
HphI	GGTGA	6 cut(s)	473, 1262, 1283, 1687, 1703, 2222
Hpy166II	GTNNAC	6 cut(s)	622, 721, 1075, 1575, 1719, 2389
Hpy8I	GTNNAC	6 cut(s)	622, 721, 1075, 1575, 1719, 2389
Hpy99I	CGWCG	3 cut(s)	139, 142, 1956
HpyAV	CCTTC	8 cut(s)	124, 263, 709, 1659, 1814, 1866, 1978, 2458
HpyCH4III	ACNGT	8 cut(s)	931, 1657, 1675, 1681, 1723, 2624, 2691, 2804
HpyCH4IV	ACGT	6 cut(s)	134, 285, 812, 1071, 1321, 1891
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 50, 1252, 1322, 1349, 1954, 2508
HpySE526I	ACGT	6 cut(s)	134, 285, 812, 1071, 1321, 1891
Hsp92II	CATG	9 cut(s)	175, 898, 1250, 1382, 1424, 1782, 2185, 2268, 2810
KflI	GGGWCCC	1 cut(s)	2480
Kpn2I	TCCGGA	3 cut(s)	10, 157, 1483
KpnI	GGTACC	1 cut(s)	2791
LguI	GCTCTTC	2 cut(s)	9, 486
LmnI	GCTCC	7 cut(s)	103, 703, 817, 1321, 1357, 1748, 2515
Lsp1109I	GCAGC	3 cut(s)	179, 1769, 2833
LweI	GCATC	8 cut(s)	1052, 1233, 1837, 1957, 2216, 2347, 2893, 2915
MaeI	CTAG	7 cut(s)	651, 2027, 2198, 2211, 2240, 2361, 2735
MaeII	ACGT	6 cut(s)	134, 285, 812, 1071, 1321, 1891
MaeIII	GTNAC	8 cut(s)	925, 1657, 1675, 1723, 2017, 2258, 2363, 2629
MbiI	CCGCTC	1 cut(s)	19
MfeI	CAATTG	3 cut(s)	414, 957, 1311
MflI	RGATCY	4 cut(s)	21, 379, 1753, 1975
MhlI	GDGCHC	4 cut(s)	723, 1856, 1866, 2748
MlyI	GAGTC	2 cut(s)	1376, 2908
MmeI	TCCRAC	2 cut(s)	795, 1490
Mph1103I	ATGCAT	3 cut(s)	1248, 1950, 2908
MroI	TCCGGA	3 cut(s)	10, 157, 1483
MroXI	GAANNNNTTC	3 cut(s)	877, 1803, 2585
MslI	CAYNNNNRTG	2 cut(s)	2727, 2796
MspA1I	CMGCKG	1 cut(s)	35
MspCI	CTTAAG	2 cut(s)	635, 1030
MspI	CCGG	8 cut(s)	11, 158, 209, 339, 963, 1484, 1528, 2397
MspR9I	CCNGG	6 cut(s)	408, 665, 701, 964, 1528, 2369
MunI	CAATTG	3 cut(s)	414, 957, 1311
Mva1269I	GAATGC	4 cut(s)	486, 802, 1325, 2456
MvaI	CCWGG	4 cut(s)	408, 665, 701, 2369
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	7 cut(s)	41, 50, 1252, 1322, 1349, 1954, 2508
NciI	CCSGG	2 cut(s)	964, 1528
NcoI	CCATGG	2 cut(s)	894, 2181
NdeI	CATATG	4 cut(s)	375, 2353, 2758, 2919
NlaIII	CATG	9 cut(s)	175, 898, 1250, 1382, 1424, 1782, 2185, 2268, 2810
NlaIV	GGNNCC	8 cut(s)	9, 337, 969, 1641, 1977, 2481, 2482, 2789
NmuCI	GTSAC	3 cut(s)	1675, 2258, 2629
NsiI	ATGCAT	3 cut(s)	1248, 1950, 2908
NspI	RCATGY	2 cut(s)	1782, 2268
NspV	TTCGAA	1 cut(s)	803
PaeI	GCATGC	1 cut(s)	1782
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	752
PciSI	GCTCTTC	2 cut(s)	9, 486
PcsI	WCGNNNNNNNCGW	2 cut(s)	809, 1837
PctI	GAATGC	4 cut(s)	486, 802, 1325, 2456
PdmI	GAANNNNTTC	3 cut(s)	877, 1803, 2585
PflFI	GACNNNGTC	2 cut(s)	503, 1701
PflMI	CCANNNNNTGG	2 cut(s)	376, 814
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	5 cut(s)	37, 194, 593, 1784, 2848
PleI	GAGTC	2 cut(s)	1376, 2908
PmaCI	CACGTG	1 cut(s)	1322
PmlI	CACGTG	1 cut(s)	1322
PpsI	GAGTC	2 cut(s)	1376, 2908
Ppu21I	YACGTR	1 cut(s)	1322
PpuMI	RGGWCCY	2 cut(s)	968, 2480
PshBI	ATTAAT	1 cut(s)	597
PsiI	TTATAA	2 cut(s)	1002, 1371
Psp1406I	AACGTT	1 cut(s)	812
Psp5II	RGGWCCY	2 cut(s)	968, 2480
Psp6I	CCWGG	4 cut(s)	406, 663, 699, 2367
PspCI	CACGTG	1 cut(s)	1322
PspGI	CCWGG	4 cut(s)	406, 663, 699, 2367
PspN4I	GGNNCC	8 cut(s)	9, 337, 969, 1641, 1977, 2481, 2482, 2789
PspPI	GGNCC	7 cut(s)	410, 557, 968, 1293, 1525, 2178, 2480
PspPPI	RGGWCCY	2 cut(s)	968, 2480
PsrI	GAACNNNNNNTAC	2 cut(s)	2771, 2803
PstNI	CAGNNNCTG	1 cut(s)	2144
PsuI	RGATCY	4 cut(s)	21, 379, 1753, 1975
PsyI	GACNNNGTC	2 cut(s)	503, 1701
RsaI	GTAC	7 cut(s)	1631, 1683, 1718, 2116, 2388, 2498, 2789
RsaNI	GTAC	7 cut(s)	1630, 1682, 1717, 2115, 2387, 2497, 2788
RseI	CAYNNNNRTG	2 cut(s)	2727, 2796
SapI	GCTCTTC	2 cut(s)	9, 486
SatI	GCNGC	5 cut(s)	36, 193, 592, 1783, 2847
Sau96I	GGNCC	7 cut(s)	410, 557, 968, 1293, 1525, 2178, 2480
SchI	GAGTC	2 cut(s)	1376, 2908
ScrFI	CCNGG	6 cut(s)	408, 665, 701, 964, 1528, 2369
SduI	GDGCHC	4 cut(s)	723, 1856, 1866, 2748
SfaNI	GCATC	8 cut(s)	1052, 1233, 1837, 1957, 2216, 2347, 2893, 2915
SfcI	CTRYAG	2 cut(s)	467, 930
SfuI	TTCGAA	1 cut(s)	803
SinI	GGWCC	6 cut(s)	410, 557, 968, 1293, 2178, 2480
SmiMI	CAYNNNNRTG	2 cut(s)	2727, 2796
SmlI	CTYRAG	6 cut(s)	307, 516, 635, 854, 1030, 2276
SmoI	CTYRAG	6 cut(s)	307, 516, 635, 854, 1030, 2276
SphI	GCATGC	1 cut(s)	1782
SseBI	AGGCCT	1 cut(s)	752
SsiI	CCGC	7 cut(s)	19, 35, 101, 200, 223, 244, 591
SspI	AATATT	1 cut(s)	2311
SspMI	CTAG	7 cut(s)	651, 2027, 2198, 2211, 2240, 2361, 2735
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	6 cut(s)	406, 663, 699, 962, 1526, 2367
StyI	CCWWGG	6 cut(s)	118, 894, 1558, 1599, 2181, 2504
TaaI	ACNGT	8 cut(s)	931, 1657, 1675, 1681, 1723, 2624, 2691, 2804
TaiI	ACGT	6 cut(s)	137, 288, 815, 1074, 1324, 1894
TaqII	GACCGA	1 cut(s)	1653
TatI	WGTACW	3 cut(s)	1629, 1681, 2114
TauI	GCSGC	2 cut(s)	38, 594
TscAI	CASTG	4 cut(s)	1166, 1726, 2758, 2827
TseFI	GTSAC	3 cut(s)	1675, 2258, 2629
TseI	GCWGC	3 cut(s)	192, 1782, 2846
Tsp45I	GTSAC	3 cut(s)	1675, 2258, 2629
TspGWI	ACGGA	1 cut(s)	1735
TspRI	CASTG	4 cut(s)	1166, 1726, 2758, 2827
Tth111I	GACNNNGTC	2 cut(s)	503, 1701
Van91I	CCANNNNNTGG	2 cut(s)	376, 814
Vha464I	CTTAAG	2 cut(s)	635, 1030
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	6 cut(s)	410, 557, 968, 1293, 2178, 2480
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	3 cut(s)	604, 888, 1833
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	2 cut(s)	1782, 2268
XmnI	GAANNNNTTC	3 cut(s)	877, 1803, 2585
XspI	CTAG	7 cut(s)	651, 2027, 2198, 2211, 2240, 2361, 2735
Zsp2I	ATGCAT	3 cut(s)	1248, 1950, 2908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.