Rorug06G0482500

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005739
Physical Location & Seq
Forward (+)
60335366 .. 60336825
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0482500.1

Sequence Viewer

Length: 171 bp
ATGGGACACTCGAACGTCTGGAACTCGCATCCCAAGTCTTACGGCCCTGGTTCTCGCACTTGCCGAGTGTGTGGGAATCCTCATGGGTTGGTCAGGAAGTACGGACTGATGTGCTGCAGGCAGTGCTTCCGCAGCAATGCAAAGGAAATTGGCTTCATCAAGTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
DUSP UCH

Protein Analysis

56

Amino Acids

6.39

Weight (kDa)

9.98

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 55 1e-14 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AfaI GTAC 2 cut(s) 101, 164
AjnI CCWGG 1 cut(s) 46
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 114, 132
AspS9I GGNCC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 101, 144
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 115, 133
BlsI GCNGC 2 cut(s) 116, 134
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 101, 144
BshFI GGCC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 45
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 123, 132
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 101, 144
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 100, 163
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 45, 153
CviKI_1 RGCY 2 cut(s) 45, 153
CviQI GTAC 2 cut(s) 100, 163
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 115, 133
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 115, 133
GluI GCNGC 2 cut(s) 115, 133
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 19, 94
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 117, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 132
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 86
LpnPI CCDG 5 cut(s) 4, 33, 60, 79, 103
Lsp1109I GCAGC 2 cut(s) 101, 144
LweI GCATC 1 cut(s) 37
MaeII ACGT 1 cut(s) 15
MluCI AATT 1 cut(s) 147
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 123, 132
NlaIII CATG 1 cut(s) 86
NmeAIII GCCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 116, 134
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
RsaI GTAC 2 cut(s) 101, 164
RsaNI GTAC 2 cut(s) 100, 163
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 2 cut(s) 115, 133
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 18
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TscAI CASTG 1 cut(s) 128
TseI GCWGC 2 cut(s) 114, 132
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.