Rmu_sc0023622.1_g000001

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023622.1
Physical Location & Seq
Reverse (-)
1 .. 3620
3620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023622.1_g000001.1.cds

Sequence Viewer

Length: 1533 bp
atgtatgttgaacaaggcaccggagagaatgataagtgggattctgaatcccaacatatggatctgctttcttcaaaaattaacagatctggaccaattgataattctgatatagttgaaaaagaatccgagggaggtggaggtgatctacagcttcgtagaatgctgatggaagagcttgactatgtcctagtttctcaagaagtttgggaaaagctatttgattggtataaaggaggtccatcattaccaagaaagatgatttctcagggcggcattaataagaatttgatggtggaggtttacccattgtgtcttaagattgttgattctagagacaacagccaggcagttatctggttaagcaaaaagatactgcattctgacaacttgaacctatttcaggcttctgtccaggagctttacgagaaggtgtgcacaattagaggaattgagcaacaaaaggcctgtatctgggattacttcaacaagcagaagcagtcattattgaatgcttcgaaccaaacgttggagcagttgaacttgcagatggatcaagatgttcttcttgaggtacaagttgatggaaactattcctcccaaatttccatggattcaactggaaatgagttagcattggtaactgtagaaccatcaaggtcatcgatgacaattgccgggggtcctactttgtcgaatggtcattcgatgggttataataataatgtgcttcagggaagcaccttaagtggctcagcatcaacagatacagatgacagaccttacgtttacaatccaatgaaaaaaggagataagggaggtttggcaggattgcagaatctcggaaatacttgctttatgaatagttccctccagtgcttagtccatacaccccctcttgttgattattttttgcaagattactctgatgagatcaacacagacaatcccttggggatgcatggtgagcttgctcttgcctttggtgagctgttgaggaaattgtggtcctctgggagaacaacaattgctccacgtgcattcaagggaaaacttgctcgatttgctcctcagtttagtggttataatcagcatgactctcaggaacttcttgctttcttactggatggactgcatgaagatttgaatcgtgtcaaaaataagccctacattgaaacaaaggattcagatggtcgtccggatgaggaagttgcagatgagtgttggaaaaatcacaaggcccggaatgattcattgattgtggatgtttgccaaggtcaatataagtcaactttggtatgcccatcttgtgccaaggtttcaattacctttgatccttttatgtacttatcggtgccactaccttcaactgttactcgatcaatgacggtgactgtactttatggtgatggacggggtcttccaatgccgtacactgtaaccttgataaaagatcgctccgttaaagatcttgttgaggcattggggactgcatgctgcttgaagagtgatgaaagccttctgcttgctgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

56.87

Weight (kDa)

4.91

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 717, 1086
AccB1I GGYRCC 2 cut(s) 17, 1354
AccB7I CCANNNNNTGG 2 cut(s) 58, 529
AccIII TCCGGA 1 cut(s) 1198
AciI CCGC 1 cut(s) 273
AclI AACGTT 1 cut(s) 527
AclWI GGATC 3 cut(s) 69, 561, 1328
AcsI RAATTY 2 cut(s) 286, 603
AcuI CTGAAG 1 cut(s) 716
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 4 cut(s) 576, 1346, 1398, 1433
AfiI CCNNNNNNNGG 4 cut(s) 58, 403, 474, 529
AflII CTTAAG 2 cut(s) 317, 745
AjnI CCWGG 2 cut(s) 345, 414
AjuI GAANNNNNNNTTGG 4 cut(s) 88, 120, 512, 544
AluBI AGCT 6 cut(s) 154, 178, 217, 421, 970, 991
AluI AGCT 6 cut(s) 154, 178, 217, 421, 970, 991
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 436
AlwI GGATC 3 cut(s) 69, 561, 1328
Aor13HI TCCGGA 1 cut(s) 1198
AoxI GGCC 2 cut(s) 465, 1239
ApaLI GTGCAC 1 cut(s) 436
ApeKI GCWGC 1 cut(s) 1497
ApoI RAATTY 2 cut(s) 286, 603
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 2 cut(s) 592, 1518
AspS9I GGNCC 5 cut(s) 92, 239, 683, 1008, 1240
AsuC2I CCSGG 2 cut(s) 679, 1243
AsuHPI GGTGA 5 cut(s) 155, 977, 998, 1402, 1418
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 4 cut(s) 92, 239, 683, 1008
BaeGI GKGCMC 1 cut(s) 440
BanI GGYRCC 2 cut(s) 17, 1354
BbrPI CACGTG 1 cut(s) 1037
BbsI GAAGAC 1 cut(s) 1412
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 1484
BceAI ACGGC 1 cut(s) 1414
BciT130I CCWGG 2 cut(s) 347, 416
BcnI CCSGG 2 cut(s) 679, 1243
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 191, 333
BfmI CTRYAG 2 cut(s) 149, 645
BfrI CTTAAG 2 cut(s) 317, 745
BglII AGATCT 2 cut(s) 86, 1468
BisI GCNGC 2 cut(s) 274, 1498
BlpI GCTNAGC 1 cut(s) 754
BlsI GCNGC 2 cut(s) 275, 1499
Bme1390I CCNGG 4 cut(s) 347, 416, 679, 1243
Bme18I GGWCC 4 cut(s) 92, 239, 683, 1008
BmgT120I GGNCC 5 cut(s) 92, 239, 683, 1008, 1240
BmiI GGNNCC 3 cut(s) 19, 684, 1356
BmrFI CCNGG 4 cut(s) 347, 416, 679, 1243
BmsI GCATC 2 cut(s) 767, 948
BpiI GAAGAC 1 cut(s) 1412
BpmI CTGGAG 1 cut(s) 857
Bpu1102I GCTNAGC 1 cut(s) 754
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 183, 590
BpuMI CCSGG 2 cut(s) 679, 1243
Bsa29I ATCGAT 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 1146
BsaJI CCNNGG 6 cut(s) 129, 609, 678, 951, 1273, 1314
BsaWI WCCGGW 2 cut(s) 20, 1198
BsaXI ACNNNNNCTCC 4 cut(s) 581, 611, 1015, 1045
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 403, 474, 529
Bse1I ACTGG 3 cut(s) 625, 874, 1128
Bse8I GATNNNNATC 1 cut(s) 1146
BseAI TCCGGA 1 cut(s) 1198
BseBI CCWGG 2 cut(s) 347, 416
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 6 cut(s) 129, 609, 678, 951, 1273, 1314
BseGI GGATG 4 cut(s) 963, 1132, 1207, 1270
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 4 cut(s) 58, 403, 474, 529
BseMII CTCAG 5 cut(s) 281, 768, 1085, 1115, 1521
BseNI ACTGG 3 cut(s) 625, 874, 1128
BseRI GAGGAG 1 cut(s) 1059
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 1 cut(s) 1484
BshFI GGCC 2 cut(s) 467, 1241
BshNI GGYRCC 2 cut(s) 17, 1354
BshVI ATCGAT 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 4 cut(s) 21, 678, 1199, 1243
BslFI GGGAC 1 cut(s) 1501
BslI CCNNNNNNNGG 4 cut(s) 58, 403, 474, 529
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 1501
BsmI GAATGC 4 cut(s) 168, 379, 517, 1040
BsnI GGCC 2 cut(s) 467, 1241
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 440
Bsp13I TCCGGA 1 cut(s) 1198
Bsp143I GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
Bsp1720I GCTNAGC 1 cut(s) 754
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 467, 1241
BspCNI CTCAG 5 cut(s) 280, 767, 1084, 1114, 1522
BspDI ATCGAT 1 cut(s) 665
BspEI TCCGGA 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 19, 684, 1356
BspPI GGATC 3 cut(s) 69, 561, 1328
BspQI GCTCTTC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 2 cut(s) 17, 1354
BspTI CTTAAG 2 cut(s) 317, 745
BsrI ACTGG 3 cut(s) 625, 874, 1128
BssECI CCNNGG 6 cut(s) 129, 609, 678, 951, 1273, 1314
BssMI GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
BssT1I CCWWGG 4 cut(s) 609, 951, 1273, 1314
Bst2UI CCWGG 2 cut(s) 347, 416
Bst4CI ACNGT 5 cut(s) 646, 1372, 1390, 1396, 1438
Bst6I CTCTTC 2 cut(s) 168, 1499
BstAFI CTTAAG 2 cut(s) 317, 745
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 972, 1495, 1527
BstDEI CTNAG 6 cut(s) 267, 754, 880, 1071, 1101, 1530
BstDSI CCRYGG 1 cut(s) 609
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 4 cut(s) 963, 1132, 1207, 1270
BstKTI GATC 9 cut(s) 64, 89, 148, 556, 936, 1336, 1382, 1456, 1471
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
BstMWI GCNNNNNNNGC 3 cut(s) 967, 1037, 1064
BstNI CCWGG 2 cut(s) 347, 416
BstNSI RCATGY 1 cut(s) 1497
BstSCI CCNGG 4 cut(s) 345, 414, 677, 1241
BstSFI CTRYAG 2 cut(s) 149, 645
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 1484
BstV2I GAAGAC 1 cut(s) 1412
BstX2I RGATCY 3 cut(s) 61, 86, 1468
BstYI RGATCY 3 cut(s) 61, 86, 1468
Bsu15I ATCGAT 1 cut(s) 665
BsuRI GGCC 2 cut(s) 467, 1241
BsuTUI ATCGAT 1 cut(s) 665
BtgI CCRYGG 1 cut(s) 609
BtsCI GGATG 4 cut(s) 963, 1132, 1207, 1270
BtsIMutI CAGTG 2 cut(s) 881, 1434
Cac8I GCNNGC 3 cut(s) 972, 1495, 1527
Cfr13I GGNCC 5 cut(s) 92, 239, 683, 1008, 1240
ClaI ATCGAT 1 cut(s) 665
Csp6I GTAC 4 cut(s) 575, 1345, 1397, 1432
CviAII CATG 5 cut(s) 610, 962, 1094, 1136, 1494
CviQI GTAC 4 cut(s) 575, 1345, 1397, 1432
DdeI CTNAG 6 cut(s) 267, 754, 880, 1071, 1101, 1530
DpnI GATC 9 cut(s) 63, 88, 147, 555, 935, 1335, 1381, 1455, 1470
DpnII GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
Eam1104I CTCTTC 2 cut(s) 168, 1499
EarI CTCTTC 2 cut(s) 168, 1499
Eco130I CCWWGG 4 cut(s) 609, 951, 1273, 1314
Eco147I AGGCCT 1 cut(s) 467
Eco47I GGWCC 4 cut(s) 92, 239, 683, 1008
Eco57I CTGAAG 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 345, 414
EcoT14I CCWWGG 4 cut(s) 609, 951, 1273, 1314
EcoT22I ATGCAT 1 cut(s) 963
ErhI CCWWGG 4 cut(s) 609, 951, 1273, 1314
FaeI CATG 5 cut(s) 613, 965, 1097, 1139, 1497
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 1501
FatI CATG 5 cut(s) 609, 961, 1093, 1135, 1493
FauNDI CATATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 274, 1498
FokI GGATG 4 cut(s) 970, 1139, 1214, 1277
Fsp4HI GCNGC 2 cut(s) 274, 1498
FspBI CTAG 2 cut(s) 191, 333
GluI GCNGC 2 cut(s) 274, 1498
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 2 cut(s) 467, 1241
HapII CCGG 4 cut(s) 21, 678, 1199, 1243
Hin1II CATG 5 cut(s) 613, 965, 1097, 1139, 1497
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HpaII CCGG 4 cut(s) 21, 678, 1199, 1243
HphI GGTGA 5 cut(s) 155, 977, 998, 1402, 1418
Hpy166II GTNNAC 5 cut(s) 304, 438, 790, 1290, 1434
Hpy188I TCNGA 7 cut(s) 46, 109, 130, 385, 845, 928, 1189
Hpy188III TCNNGA 7 cut(s) 90, 200, 333, 557, 569, 1103, 1199
Hpy8I GTNNAC 5 cut(s) 304, 438, 790, 1290, 1434
HpyAV CCTTC 3 cut(s) 424, 1374, 1529
HpyCH4III ACNGT 5 cut(s) 646, 1372, 1390, 1396, 1438
HpyCH4IV ACGT 3 cut(s) 527, 786, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 967, 1037, 1064
HpyF3I CTNAG 6 cut(s) 267, 754, 880, 1071, 1101, 1530
HpySE526I ACGT 3 cut(s) 527, 786, 1036
Hsp92II CATG 5 cut(s) 613, 965, 1097, 1139, 1497
Kpn2I TCCGGA 1 cut(s) 1198
Kzo9I GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 5 cut(s) 418, 532, 1036, 1072, 1463
Lsp1109I GCAGC 1 cut(s) 1484
LweI GCATC 2 cut(s) 767, 948
MaeI CTAG 2 cut(s) 191, 333
MaeII ACGT 3 cut(s) 527, 786, 1036
MaeIII GTNAC 4 cut(s) 640, 1372, 1390, 1438
MalI GATC 9 cut(s) 63, 88, 147, 555, 935, 1335, 1381, 1455, 1470
MboI GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
MboII GAAGA 6 cut(s) 63, 185, 557, 1151, 1412, 1516
MfeI CAATTG 3 cut(s) 96, 672, 1026
MflI RGATCY 3 cut(s) 61, 86, 1468
MhlI GDGCHC 1 cut(s) 440
MlyI GAGTC 1 cut(s) 1091
MmeI TCCRAC 2 cut(s) 510, 1205
Mph1103I ATGCAT 1 cut(s) 963
MroI TCCGGA 1 cut(s) 1198
MroXI GAANNNNTTC 2 cut(s) 592, 1518
MseI TTAA 6 cut(s) 81, 279, 318, 362, 746, 1464
MspCI CTTAAG 2 cut(s) 317, 745
MspI CCGG 4 cut(s) 21, 678, 1199, 1243
MspR9I CCNGG 4 cut(s) 347, 416, 679, 1243
MunI CAATTG 3 cut(s) 96, 672, 1026
Mva1269I GAATGC 4 cut(s) 168, 379, 517, 1040
MvaI CCWGG 2 cut(s) 347, 416
MwoI GCNNNNNNNGC 3 cut(s) 967, 1037, 1064
NciI CCSGG 2 cut(s) 679, 1243
NcoI CCATGG 1 cut(s) 609
NdeI CATATG 1 cut(s) 57
NdeII GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
NlaIII CATG 5 cut(s) 613, 965, 1097, 1139, 1497
NlaIV GGNNCC 3 cut(s) 19, 684, 1356
NmuCI GTSAC 1 cut(s) 1390
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 1 cut(s) 1497
NspV TTCGAA 1 cut(s) 518
PaeI GCATGC 1 cut(s) 1497
PceI AGGCCT 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PctI GAATGC 4 cut(s) 168, 379, 517, 1040
PdmI GAANNNNTTC 2 cut(s) 592, 1518
PfeI GAWTC 9 cut(s) 41, 47, 125, 329, 614, 838, 1147, 1184, 1250
PflFI GACNNNGTC 2 cut(s) 185, 1416
PflMI CCANNNNNTGG 2 cut(s) 58, 529
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 2 cut(s) 275, 1499
PleI GAGTC 1 cut(s) 1091
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
PpsI GAGTC 1 cut(s) 1091
Ppu21I YACGTR 1 cut(s) 1037
PpuMI RGGWCCY 1 cut(s) 683
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 2 cut(s) 717, 1086
Psp1406I AACGTT 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 345, 414
PspCI CACGTG 1 cut(s) 1037
PspGI CCWGG 2 cut(s) 345, 414
PspN4I GGNNCC 3 cut(s) 19, 684, 1356
PspPI GGNCC 5 cut(s) 92, 239, 683, 1008, 1240
PspPPI RGGWCCY 1 cut(s) 683
PsuI RGATCY 3 cut(s) 61, 86, 1468
PsyI GACNNNGTC 2 cut(s) 185, 1416
RsaI GTAC 4 cut(s) 576, 1346, 1398, 1433
RsaNI GTAC 4 cut(s) 575, 1345, 1397, 1432
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 6 cut(s) 81, 279, 318, 362, 746, 1464
SatI GCNGC 2 cut(s) 274, 1498
Sau3AI GATC 9 cut(s) 61, 86, 145, 553, 933, 1333, 1379, 1453, 1468
Sau96I GGNCC 5 cut(s) 92, 239, 683, 1008, 1240
SchI GAGTC 1 cut(s) 1091
ScrFI CCNGG 4 cut(s) 347, 416, 679, 1243
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 2 cut(s) 767, 948
SfcI CTRYAG 2 cut(s) 149, 645
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 4 cut(s) 92, 239, 683, 1008
SmlI CTYRAG 4 cut(s) 198, 317, 569, 745
SmoI CTYRAG 4 cut(s) 198, 317, 569, 745
SphI GCATGC 1 cut(s) 1497
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 191, 333
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 4 cut(s) 345, 414, 677, 1241
StyI CCWWGG 4 cut(s) 609, 951, 1273, 1314
TaaI ACNGT 5 cut(s) 646, 1372, 1390, 1396, 1438
TaiI ACGT 3 cut(s) 530, 789, 1039
TaqI TCGA 6 cut(s) 518, 665, 695, 707, 1060, 1378
TatI WGTACW 2 cut(s) 1344, 1396
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 9 cut(s) 41, 47, 125, 329, 614, 838, 1147, 1184, 1250
Tru1I TTAA 6 cut(s) 81, 279, 318, 362, 746, 1464
Tru9I TTAA 6 cut(s) 81, 279, 318, 362, 746, 1464
TscAI CASTG 2 cut(s) 881, 1441
TseFI GTSAC 1 cut(s) 1390
TseI GCWGC 1 cut(s) 1497
Tsp45I GTSAC 1 cut(s) 1390
TspDTI ATGAA 5 cut(s) 815, 875, 1152, 1242, 1527
TspGWI ACGGA 1 cut(s) 1450
TspRI CASTG 2 cut(s) 881, 1441
Tth111I GACNNNGTC 2 cut(s) 185, 1416
Van91I CCANNNNNTGG 2 cut(s) 58, 529
Vha464I CTTAAG 2 cut(s) 317, 745
VneI GTGCAC 1 cut(s) 436
VpaK11BI GGWCC 4 cut(s) 92, 239, 683, 1008
VspI ATTAAT 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 401
XapI RAATTY 2 cut(s) 286, 603
XbaI TCTAGA 1 cut(s) 332
XceI RCATGY 1 cut(s) 1497
XmnI GAANNNNTTC 2 cut(s) 592, 1518
XspI CTAG 2 cut(s) 191, 333
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.