Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005339

Physical Location & Seq

Genomic Coordinates Forward (+)

66439463 .. 66443969

Gene Structure 4507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGATCATGGTAATGATGCGTGTAATGAGAGAGAGCAGCGCCGCCGCCTCCACCGCCGCTGCCCTTCTCTCTCTGTACTCTGCTGTCGTCTCTAGACAGACCCAGAAGGCCATTTTGGGTGAGACCATGGCACAAAATTTGTTACGCGCAAAGCATATTGGTAACCTCTCAAGTAGTGCTAGGTCATTTTTTCTCAGTGGGTCACGATGTAGTGCAACAGAGGGAAATTCATGCACTTGCTCTGAAGATGAAAACTGTGCTCCACAAAGGCAGCAAGCAAGAAATAGAGGTCTTCTTGCCCAAAATCCATCAGGCACCGGATCTAAACCTTCTGCAAGGGCAGGAATCTTAGTTTCGGGAGATGTAGTGAAAGTAGTAGATTCTCGTAAATCTGAGAGTGTTGACCAGACAACTTCTATAAAACAGGTGGCAGCTGCCCCAACACCTTTTGTGAGATCAGATACTGTAAGTTATGCTAGCAACGTTGATGGCATTCAGAAGGATGTAAGCTCATCACCTCTTGCTACAGAGCAATTTGTTAAGGCTGGTGTTGCAGCTGTCAATTTTTTGTCAGATATAGTGAGTTATAAGATTCCTTTGTCTGATGGGATGGGGATGCTTAGTTTGCCAAAAAACACTGTGGTTCGTTCCACCGTGGGAGTCTCCAGTGTCAAGTCATCAAATGTGAAGCAGATAAACAGAGAGCATTTTTCTAGTGTGCATCCAAAGCCATCTACTGAGAGAGCAGCAGCTTCAGAGCGTACGAGTAATCATCAGGGATCAAAGGGAAATGTTGATAAATCCAGTTCTGTTAGAGGTCTAAATCATGTTCCATATAACAGGACAGAAAACTCAGCAGCGGCTTACAGTGTTCAGACTCCAGAAACTCATGATAGAAGGGCTTTGCCACGAAAATCAAAAGCTCAGCCAAACCACTTCGTTCCAGATTTCAGTTCCAATGTACAGATTTCAGATTTAGAGACTACTAGATGTGGCCCTAAAGGTTTCAATAAACCTGTAAGAGAGATGAAAATGCCAACAGGGATTGCTCCATTCAACAGGCAGTGTGCGCACAAGGGGAATGTTGTTCAAAATGTTTCTCACATACTGCAGCAGCTTAAATGGGGCCCTTCTGCAGAGGCAGCTCTTGGAAGTCTCAACTGTTCAATGGACGCATATCAAGCCAACCAAATTTTGAAGCAAATTCAAGATCATTCTGTTGCTCTTGGATTTTTTAATTGGTTAAAACGACAAGCAGGATTCAGGCATGATGGGCACACTTACACCACCATGGTTGGCATCCTTGGTCGTGCCAGGCAGTTCGGTGCCATCAATAAATTGCTTAATCAGATGGTGAATGAAGGATGTCAACCAAATGTTGTGACATACAATCGTCTGATTCATAGTTATGGTCGCGCAAACTATTTGAAAGACGCAATGAATGTGTTCAGTCAAATGCAAGAAGCAGGTTGTGAGCCTGACCGCGTCACCTACTGTACACTCATTGACATCCATGCTAAATCTGGGTTTCTTGATGTCGCCCTTGGACTGTATGATAGGATGCAAGAGGCTGGTCTTTCGCCTGACACATTTACTTACAGTGTTATGATCAACTGCCTTGGGAAAGCTGGCCATTTAGCTGCAGCTCACCGGCTGTTCTGTGAGATGGTGGATCATGGTTGTGTTCCCAACCTGGTCACCTATAATATCATGATAGCTTTGCAGGCCAAAGCAAGGAACTATGAGACTGCTTTAAAGCTCTACCGTGACATGCAGGGTGCTGGATTTCAGCCAGATAAAGTGACTTATAGCATAGTAATGGAGGTGCTCGGCCATTGTGGATATCTTGAGGAGGCAGAAGCACTTTTTGGTGAAATGAAACGGAAGAATTGGGTACCTGATGAACCTGTTTATGGCCTTTTAGTTGATTTGTGGGGCAAGGCTGGTAATGTGCAAAAAGCCTGGGATTGGTATCAAGCAATGCTCCATGCTGGTTTGCGTCCTAATGTGCCTACTTGCAATTCTCTTCTCAGTGCGTTTCTTAGGGTGCACCGTTTGTCTGATGCCTATAACTTGTTGCAGAGCATGGTGGGCTTAGGTCTGAACCCTTCTTTGCAGACATATACCTTGCTTCTCAGCTGTTGCACAGAAGCACGATCACCATATGACATGGAATTTTGTTGTGAGCTCATGGCAGTCACACGCCATCCAGCTCATACATTCTTATTGTCTATGCCATCAGCAGGACCCGATGGCCAAAACGTGAGAGAACACATGAGCAGCTTCTTGGATCTAATGCATAGTGAGGATAGAGAAAGCAAGAGGGGGCTTGTAGATGCAGTAGTGGATTTCCTTCATAAATCAGGGCTCAAGGAGGAGGCTGGTTCTGTCTGGGAGGTGGCTGCGCAGAAGAATGTTTATCCAGACGCCGTCAAAGAGAAAGGCTCATGTTATTGGCTTATAAACCTACATGTTATGTCTGATGGTACTGCTGTGACAGCACTATCAAGGACACTTGCTTGGTTTCGCCAAGAAATGCTAATATCCGGGGTTTGTCCAAACCGGATTGATATTGTGACAGGATGGGGACGGCGGAGTAGGGTTACTGGAACTTCTATGGTGAGGCATGCAGTGCAGGAATTGCTGCACATGTTTAGCTTCCCGTTTTTCACCGAGAATGGGAATTCTGGGTGCTTTGTAGGATGTGGGGAGTCTCTTAATAGATGGTTACTCGAATCTTATGTGGAGCGGATGCATTTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

922

Amino Acids

101.32

Weight (kDa)

8.76

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	419 - 471	9.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	426 - 468	4.5e-09	PPR repeat family
PPR_3	PF13812	446 - 504	1.3e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	455 - 487	1.2e-10	PPR repeat
PPR_2	PF13041	458 - 506	7.4e-16	PPR repeat family
PPR	PF01535	461 - 491	8.2e-07	PPR repeat
PPR_3	PF13812	482 - 542	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	490 - 522	1.3e-06	PPR repeat
PPR	PF01535	496 - 526	9.2e-06	PPR repeat
PPR_2	PF13041	498 - 542	1e-09	PPR repeat family
PPR_long	PF17177	511 - 612	2.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	518 - 574	4.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	525 - 557	1.6e-08	PPR repeat
PPR	PF01535	531 - 561	1.8e-06	PPR repeat
PPR_2	PF13041	533 - 572	1.1e-11	PPR repeat family
PPR_3	PF13812	551 - 611	1.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	563 - 610	3.7e-13	PPR repeat family
PPR	PF01535	601 - 630	4.8e-06	PPR repeat
PPR_3	PF13812	661 - 715	9.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	668 - 715	5.3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18900 AT1G18900 AT1G18900 AT1G18900
fragaria_vesca	FvH4_5g15730 FvH4_5g15730 FvH4_5g15730
malus_domestica	MD06G1185900.v1.1 MD14G1192100.v1.1
prunus_persica	Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1
pyrus_communis	pycom06g16530 pycom14g15980
rosa_chinensis	RchiOBHm_Chr7g0180381
rosa_laevigata	RLG00000005272
rosa_multiflora	Rmu_sc0003526.1_g000009
rosa_roxburghii	Rroxscaffold_3G00272940
rosa_rugosa	Rorug06G0432600 Rorug06G0432700 Rorug06G0432800 Rorug06G0432800
rosa_samantha	Rh7AG033200 Rh7BG033100 Rh7CG035000 Rh7DG033600
rosa_wichuraiana	Rw7G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	588, 2462
Acc16I	TGCGCA	2 cut(s)	1071, 2406
Acc36I	ACCTGC	1 cut(s)	1457
Acc65I	GGTACC	1 cut(s)	1894
AccB1I	GGYRCC	3 cut(s)	314, 1325, 1894
AccBSI	CCGCTC	1 cut(s)	2749
AccII	CGCG	3 cut(s)	147, 1416, 1485
AciI	CCGC	8 cut(s)	42, 45, 54, 57, 860, 1483, 2593, 2749
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	4 cut(s)	328, 787, 1680, 2298
AcoI	YGGCCR	3 cut(s)	1630, 1831, 2254
AcsI	RAATTY	6 cut(s)	136, 226, 1191, 1203, 2174, 2683
AcuI	CTGAAG	2 cut(s)	264, 738
AcyI	GRCGYC	1 cut(s)	2427
AfaI	GTAC	6 cut(s)	77, 763, 963, 1498, 1896, 2488
AfiI	CCNNNNNNNGG	5 cut(s)	1734, 1913, 1968, 2243, 2679
AflIII	ACRYGT	2 cut(s)	2470, 2649
AgsI	TTSAA	7 cut(s)	1009, 1057, 1091, 1167, 1198, 1208, 1429
AjnI	CCWGG	3 cut(s)	1313, 1692, 1961
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 1851, 1883
Alw21I	GWGCWC	4 cut(s)	262, 1830, 2052, 2190
Alw26I	GTCTC	7 cut(s)	94, 116, 667, 974, 1160, 1739, 2718
Alw44I	GTGCAC	1 cut(s)	2048
AlwI	GGATC	4 cut(s)	328, 787, 1680, 2298
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	8 cut(s)	108, 994, 1126, 1630, 1725, 1831, 1915, 2254
ApaI	GGGCCC	1 cut(s)	1130
ApaLI	GTGCAC	1 cut(s)	2048
ApoI	RAATTY	6 cut(s)	136, 226, 1191, 1203, 2174, 2683
Asp700I	GAANNNNTTC	1 cut(s)	1445
Asp718I	GGTACC	1 cut(s)	1894
AspLEI	GCGC	5 cut(s)	41, 149, 1072, 1418, 2407
AspS9I	GGNCC	4 cut(s)	995, 1126, 1127, 2246
AsuC2I	CCSGG	1 cut(s)	2548
AsuNHI	GCTAGC	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	2246
BaeGI	GKGCMC	3 cut(s)	1130, 1278, 2052
BaeI	ACNNNNGTAYC	2 cut(s)	2478, 2511
BalI	TGGCCA	2 cut(s)	1632, 2256
BanI	GGYRCC	3 cut(s)	314, 1325, 1894
BanII	GRGCYC	3 cut(s)	1130, 2190, 2370
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	4 cut(s)	262, 1830, 2052, 2190
BceAI	ACGGC	2 cut(s)	2414, 2606
BciT130I	CCWGG	3 cut(s)	1315, 1694, 1963
BclI	TGATCA	2 cut(s)	3, 1608
BcnI	CCSGG	1 cut(s)	2548
BcoDI	GTCTC	7 cut(s)	94, 116, 667, 974, 1160, 1739, 2718
BfaI	CTAG	5 cut(s)	93, 180, 477, 714, 987
BfmI	CTRYAG	4 cut(s)	525, 1109, 1134, 1641
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	1457
BlpI	GCTNAGC	1 cut(s)	924
Bme1390I	CCNGG	4 cut(s)	1315, 1694, 1963, 2548
Bme18I	GGWCC	1 cut(s)	2246
BmgT120I	GGNCC	4 cut(s)	995, 1126, 1127, 2246
BmiI	GGNNCC	6 cut(s)	316, 1127, 1128, 1327, 1896, 2248
BmrFI	CCNGG	4 cut(s)	1315, 1694, 1963, 2548
BmsI	GCATC	8 cut(s)	6, 606, 730, 1308, 1551, 2053, 2326, 2742
BmtI	GCTAGC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	2429, 2461
BpmI	CTGGAG	2 cut(s)	649, 864
Bpu10I	CCTNAGC	1 cut(s)	2095
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	3 cut(s)	154, 1868, 2354
BpuMI	CCSGG	1 cut(s)	2548
BsaBI	GATNNNNATC	1 cut(s)	1971
BsaHI	GRCGYC	1 cut(s)	2427
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	8 cut(s)	126, 654, 1290, 1303, 1543, 1618, 1962, 2547
BsaWI	WCCGGW	2 cut(s)	317, 2562
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	5 cut(s)	1734, 1913, 1968, 2243, 2679
Bse118I	RCCGGY	1 cut(s)	1650
Bse1I	ACTGG	3 cut(s)	666, 804, 2611
Bse3DI	GCAATG	2 cut(s)	1443, 1986
Bse8I	GATNNNNATC	1 cut(s)	1971
BseBI	CCWGG	3 cut(s)	1315, 1694, 1963
BseDI	CCNNGG	8 cut(s)	126, 654, 1290, 1303, 1543, 1618, 1962, 2547
BseJI	GATNNNNATC	1 cut(s)	1971
BseLI	CCNNNNNNNGG	5 cut(s)	1734, 1913, 1968, 2243, 2679
BseMI	GCAATG	2 cut(s)	1443, 1986
BseMII	CTCAG	7 cut(s)	208, 384, 729, 867, 938, 2044, 2149
BseNI	ACTGG	3 cut(s)	666, 804, 2611
BseRI	GAGGAG	2 cut(s)	1865, 2390
BseSI	GKGCMC	3 cut(s)	1130, 1278, 2052
BsgI	GTGCAG	2 cut(s)	2630, 2654
Bsh1236I	CGCG	3 cut(s)	147, 1416, 1485
BshFI	GGCC	8 cut(s)	110, 996, 1128, 1632, 1727, 1833, 1917, 2256
BshNI	GGYRCC	3 cut(s)	314, 1325, 1894
BsiHKAI	GWGCWC	4 cut(s)	262, 1830, 2052, 2190
BsiSI	CCGG	4 cut(s)	318, 1651, 2547, 2563
BsiWI	CGTACG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	2601
BslI	CCNNNNNNNGG	5 cut(s)	1734, 1913, 1968, 2243, 2679
BsmAI	GTCTC	7 cut(s)	94, 116, 667, 974, 1160, 1739, 2718
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	2601
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	8 cut(s)	110, 996, 1128, 1632, 1727, 1833, 1917, 2256
Bso31I	GGTCTC	1 cut(s)	116
Bsp120I	GGGCCC	1 cut(s)	1126
Bsp1286I	GDGCHC	7 cut(s)	262, 1130, 1278, 1830, 2052, 2190, 2370
Bsp1407I	TGTACA	2 cut(s)	961, 1496
Bsp143I	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
Bsp1720I	GCTNAGC	1 cut(s)	924
Bsp19I	CCATGG	2 cut(s)	126, 1290
BspACI	CCGC	8 cut(s)	42, 45, 54, 57, 860, 1483, 2593, 2749
BspANI	GGCC	8 cut(s)	110, 996, 1128, 1632, 1727, 1833, 1917, 2256
BspCNI	CTCAG	7 cut(s)	207, 385, 730, 866, 937, 2043, 2148
BspFNI	CGCG	3 cut(s)	147, 1416, 1485
BspHI	TCATGA	2 cut(s)	889, 1710
BspLI	GGNNCC	6 cut(s)	316, 1127, 1128, 1327, 1896, 2248
BspMAI	CTGCAG	3 cut(s)	1113, 1138, 1645
BspMI	ACCTGC	1 cut(s)	1457
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	4 cut(s)	328, 787, 1680, 2298
BspT107I	GGYRCC	3 cut(s)	314, 1325, 1894
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	2749
BsrDI	GCAATG	2 cut(s)	1443, 1986
BsrFI	RCCGGY	1 cut(s)	1650
BsrGI	TGTACA	2 cut(s)	961, 1496
BsrI	ACTGG	3 cut(s)	666, 804, 2611
BssAI	RCCGGY	1 cut(s)	1650
BssECI	CCNNGG	8 cut(s)	126, 654, 1290, 1303, 1543, 1618, 1962, 2547
BssMI	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
BssNI	GRCGYC	1 cut(s)	2427
BssT1I	CCWWGG	5 cut(s)	126, 1290, 1303, 1543, 1618
Bst2UI	CCWGG	3 cut(s)	1315, 1694, 1963
Bst6I	CTCTTC	1 cut(s)	2031
BstACI	GRCGYC	1 cut(s)	2427
BstAPI	GCANNNNNTGC	2 cut(s)	2632, 2641
BstAUI	TGTACA	2 cut(s)	961, 1496
BstC8I	GCNNGC	5 cut(s)	276, 478, 1630, 1725, 2628
BstDSI	CCRYGG	3 cut(s)	126, 654, 1290
BstEII	GGTNACC	2 cut(s)	161, 1696
BstFNI	CGCG	3 cut(s)	147, 1416, 1485
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	5 cut(s)	41, 149, 1072, 1418, 2407
BstKTI	GATC	9 cut(s)	6, 323, 458, 782, 1213, 1611, 1675, 2159, 2293
BstMAI	GTCTC	7 cut(s)	94, 116, 667, 974, 1160, 1739, 2718
BstMBI	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
BstNI	CCWGG	3 cut(s)	1315, 1694, 1963
BstNSI	RCATGY	4 cut(s)	1774, 2474, 2630, 2653
BstPI	GGTNACC	2 cut(s)	161, 1696
BstSCI	CCNGG	4 cut(s)	1313, 1692, 1961, 2546
BstSFI	CTRYAG	4 cut(s)	525, 1109, 1134, 1641
BstSLI	GKGCMC	3 cut(s)	1130, 1278, 2052
BstUI	CGCG	3 cut(s)	147, 1416, 1485
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	320, 2290
BstYI	RGATCY	2 cut(s)	320, 2290
BsuRI	GGCC	8 cut(s)	110, 996, 1128, 1632, 1727, 1833, 1917, 2256
BtgI	CCRYGG	3 cut(s)	126, 654, 1290
BtsI	GCAGTG	2 cut(s)	1070, 2637
BtsIMutI	CAGTG	8 cut(s)	202, 636, 673, 874, 1070, 1606, 2038, 2637
BveI	ACCTGC	1 cut(s)	1457
Cac8I	GCNNGC	5 cut(s)	276, 478, 1630, 1725, 2628
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	2 cut(s)	889, 1710
CfoI	GCGC	5 cut(s)	41, 149, 1072, 1418, 2407
Cfr10I	RCCGGY	1 cut(s)	1650
Cfr13I	GGNCC	4 cut(s)	995, 1126, 1127, 2246
CseI	GACGC	5 cut(s)	1181, 1442, 1474, 1988, 2435
CsiI	ACCWGGT	1 cut(s)	1692
Csp6I	GTAC	6 cut(s)	76, 762, 962, 1497, 1895, 2487
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviQI	GTAC	6 cut(s)	76, 762, 962, 1497, 1895, 2487
DpnI	GATC	9 cut(s)	5, 322, 457, 781, 1212, 1610, 1674, 2158, 2292
DpnII	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
DraI	TTTAAA	1 cut(s)	1755
EaeI	YGGCCR	3 cut(s)	1630, 1831, 2254
Eam1104I	CTCTTC	1 cut(s)	2031
EarI	CTCTTC	1 cut(s)	2031
EciI	GGCGGA	1 cut(s)	2608
Ecl136II	GAGCTC	1 cut(s)	2188
Eco130I	CCWWGG	5 cut(s)	126, 1290, 1303, 1543, 1618
Eco24I	GRGCYC	3 cut(s)	1130, 2190, 2370
Eco31I	GGTCTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	1844
Eco47I	GGWCC	1 cut(s)	2246
Eco53kI	GAGCTC	1 cut(s)	2188
Eco57I	CTGAAG	2 cut(s)	264, 738
Eco91I	GGTNACC	2 cut(s)	161, 1696
EcoICRI	GAGCTC	1 cut(s)	2188
EcoO109I	RGGNCCY	3 cut(s)	1126, 1127, 2246
EcoO65I	GGTNACC	2 cut(s)	161, 1696
EcoRI	GAATTC	1 cut(s)	2683
EcoRII	CCWGG	3 cut(s)	1313, 1692, 1961
EcoRV	GATATC	1 cut(s)	1844
EcoT14I	CCWWGG	5 cut(s)	126, 1290, 1303, 1543, 1618
EcoT22I	ATGCAT	2 cut(s)	2301, 2757
EcoT38I	GRGCYC	3 cut(s)	1130, 2190, 2370
ErhI	CCWWGG	5 cut(s)	126, 1290, 1303, 1543, 1618
Esp3I	CGTCTC	1 cut(s)	94
FaqI	GGGAC	1 cut(s)	2601
FauNDI	CATATG	1 cut(s)	2164
FbaI	TGATCA	2 cut(s)	3, 1608
FriOI	GRGCYC	3 cut(s)	1130, 2190, 2370
FspAI	RTGCGCAY	1 cut(s)	1071
FspBI	CTAG	5 cut(s)	93, 180, 477, 714, 987
FspI	TGCGCA	2 cut(s)	1071, 2406
GlaI	GCGC	5 cut(s)	40, 148, 1071, 1417, 2406
GsuI	CTGGAG	2 cut(s)	649, 864
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	8 cut(s)	110, 996, 1128, 1632, 1727, 1833, 1917, 2256
HapII	CCGG	4 cut(s)	318, 1651, 2547, 2563
HgaI	GACGC	5 cut(s)	1181, 1442, 1474, 1988, 2435
HhaI	GCGC	5 cut(s)	41, 149, 1072, 1418, 2407
Hin1I	GRCGYC	1 cut(s)	2427
Hin6I	GCGC	5 cut(s)	39, 147, 1070, 1416, 2405
HinP1I	GCGC	5 cut(s)	39, 147, 1070, 1416, 2405
HincII	GTYRAC	2 cut(s)	403, 1370
HindII	GTYRAC	2 cut(s)	403, 1370
HinfI	GANTC	9 cut(s)	345, 380, 592, 660, 877, 1260, 1399, 2711, 2735
HpaII	CCGG	4 cut(s)	318, 1651, 2547, 2563
Hpy166II	GTNNAC	4 cut(s)	403, 1370, 1499, 2050
Hpy8I	GTNNAC	4 cut(s)	403, 1370, 1499, 2050
HpyAV	CCTTC	9 cut(s)	74, 100, 339, 493, 891, 1140, 1355, 2118, 2363
HpyCH4IV	ACGT	2 cut(s)	483, 2262
HpySE526I	ACGT	2 cut(s)	483, 2262
Hsp92I	GRCGYC	1 cut(s)	2427
HspAI	GCGC	5 cut(s)	39, 147, 1070, 1416, 2405
KpnI	GGTACC	1 cut(s)	1898
Ksp22I	TGATCA	2 cut(s)	3, 1608
Kzo9I	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
LmnI	GCTCC	4 cut(s)	265, 1054, 1989, 2746
LweI	GCATC	8 cut(s)	6, 606, 730, 1308, 1551, 2053, 2326, 2742
MabI	ACCWGGT	1 cut(s)	1692
MaeI	CTAG	5 cut(s)	93, 180, 477, 714, 987
MaeII	ACGT	2 cut(s)	483, 2262
MalI	GATC	9 cut(s)	5, 322, 457, 781, 1212, 1610, 1674, 2158, 2292
MbiI	CCGCTC	1 cut(s)	2749
MboI	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
MboII	GAAGA	5 cut(s)	257, 284, 1897, 2018, 2422
MflI	RGATCY	2 cut(s)	320, 2290
MhlI	GDGCHC	7 cut(s)	262, 1130, 1278, 1830, 2052, 2190, 2370
MlsI	TGGCCA	2 cut(s)	1632, 2256
MluNI	TGGCCA	2 cut(s)	1632, 2256
MlyI	GAGTC	3 cut(s)	669, 871, 2720
Mox20I	TGGCCA	2 cut(s)	1632, 2256
Mph1103I	ATGCAT	2 cut(s)	2301, 2757
MroXI	GAANNNNTTC	1 cut(s)	1445
MscI	TGGCCA	2 cut(s)	1632, 2256
MseI	TTAA	7 cut(s)	540, 1119, 1236, 1244, 1344, 1754, 2718
MslI	CAYNNNNRTG	5 cut(s)	11, 1289, 1407, 1680, 1817
Msp20I	TGGCCA	2 cut(s)	1632, 2256
MspA1I	CMGCKG	5 cut(s)	59, 434, 557, 860, 2139
MspI	CCGG	4 cut(s)	318, 1651, 2547, 2563
MspR9I	CCNGG	4 cut(s)	1315, 1694, 1963, 2548
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	1315, 1694, 1963
MvnI	CGCG	3 cut(s)	147, 1416, 1485
NciI	CCSGG	1 cut(s)	2548
NcoI	CCATGG	2 cut(s)	126, 1290
NdeI	CATATG	1 cut(s)	2164
NdeII	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
NheI	GCTAGC	1 cut(s)	476
NlaIV	GGNNCC	6 cut(s)	316, 1127, 1128, 1327, 1896, 2248
NmeAIII	GCCGAG	1 cut(s)	1809
NmuCI	GTSAC	9 cut(s)	201, 1381, 1486, 1696, 1766, 1801, 2197, 2494, 2575
NsbI	TGCGCA	2 cut(s)	1071, 2406
NsiI	ATGCAT	2 cut(s)	2301, 2757
NspI	RCATGY	4 cut(s)	1774, 2474, 2630, 2653
PaeI	GCATGC	1 cut(s)	2630
PagI	TCATGA	2 cut(s)	889, 1710
PciI	ACATGT	2 cut(s)	2470, 2649
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	1445
PfeI	GAWTC	6 cut(s)	345, 380, 592, 1260, 1399, 2735
Pfl23II	CGTACG	1 cut(s)	761
PflFI	GACNNNGTC	2 cut(s)	1484, 2429
PleI	GAGTC	3 cut(s)	668, 871, 2719
PpsI	GAGTC	3 cut(s)	668, 871, 2719
PpuMI	RGGWCCY	1 cut(s)	2246
PscI	ACATGT	2 cut(s)	2470, 2649
PsiI	TTATAA	2 cut(s)	588, 2462
Psp124BI	GAGCTC	1 cut(s)	2190
Psp1406I	AACGTT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	2246
Psp6I	CCWGG	3 cut(s)	1313, 1692, 1961
PspEI	GGTNACC	2 cut(s)	161, 1696
PspGI	CCWGG	3 cut(s)	1313, 1692, 1961
PspLI	CGTACG	1 cut(s)	761
PspN4I	GGNNCC	6 cut(s)	316, 1127, 1128, 1327, 1896, 2248
PspOMI	GGGCCC	1 cut(s)	1126
PspPI	GGNCC	4 cut(s)	995, 1126, 1127, 2246
PspPPI	RGGWCCY	1 cut(s)	2246
PstI	CTGCAG	3 cut(s)	1113, 1138, 1645
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	320, 2290
PsyI	GACNNNGTC	2 cut(s)	1484, 2429
PvuII	CAGCTG	3 cut(s)	434, 557, 2139
RsaI	GTAC	6 cut(s)	77, 763, 963, 1498, 1896, 2488
RsaNI	GTAC	6 cut(s)	76, 762, 962, 1497, 1895, 2487
RseI	CAYNNNNRTG	5 cut(s)	11, 1289, 1407, 1680, 1817
SacI	GAGCTC	1 cut(s)	2190
SaqAI	TTAA	7 cut(s)	540, 1119, 1236, 1244, 1344, 1754, 2718
Sau3AI	GATC	9 cut(s)	3, 320, 455, 779, 1210, 1608, 1672, 2156, 2290
Sau96I	GGNCC	4 cut(s)	995, 1126, 1127, 2246
SchI	GAGTC	3 cut(s)	669, 871, 2720
ScrFI	CCNGG	4 cut(s)	1315, 1694, 1963, 2548
SduI	GDGCHC	7 cut(s)	262, 1130, 1278, 1830, 2052, 2190, 2370
SexAI	ACCWGGT	1 cut(s)	1692
SfaNI	GCATC	8 cut(s)	6, 606, 730, 1308, 1551, 2053, 2326, 2742
SfcI	CTRYAG	4 cut(s)	525, 1109, 1134, 1641
SinI	GGWCC	1 cut(s)	2246
SmiMI	CAYNNNNRTG	5 cut(s)	11, 1289, 1407, 1680, 1817
SmlI	CTYRAG	3 cut(s)	169, 1847, 2369
SmoI	CTYRAG	3 cut(s)	169, 1847, 2369
SphI	GCATGC	1 cut(s)	2630
SsiI	CCGC	8 cut(s)	42, 45, 54, 57, 860, 1483, 2593, 2749
SspMI	CTAG	5 cut(s)	93, 180, 477, 714, 987
SstI	GAGCTC	1 cut(s)	2190
StyD4I	CCNGG	4 cut(s)	1313, 1692, 1961, 2546
StyI	CCWWGG	5 cut(s)	126, 1290, 1303, 1543, 1618
TaiI	ACGT	2 cut(s)	486, 2265
TaqI	TCGA	1 cut(s)	2733
TatI	WGTACW	3 cut(s)	75, 961, 1496
TauI	GCSGC	4 cut(s)	44, 47, 59, 863
TfiI	GAWTC	6 cut(s)	345, 380, 592, 1260, 1399, 2735
Tru1I	TTAA	7 cut(s)	540, 1119, 1236, 1244, 1344, 1754, 2718
Tru9I	TTAA	7 cut(s)	540, 1119, 1236, 1244, 1344, 1754, 2718
TscAI	CASTG	8 cut(s)	202, 643, 673, 874, 1070, 1606, 2038, 2637
TseFI	GTSAC	9 cut(s)	201, 1381, 1486, 1696, 1766, 1801, 2197, 2494, 2575
Tsp45I	GTSAC	9 cut(s)	201, 1381, 1486, 1696, 1766, 1801, 2197, 2494, 2575
TspDTI	ATGAA	9 cut(s)	219, 264, 1043, 1374, 1391, 1454, 1892, 1917, 2345
TspGWI	ACGGA	1 cut(s)	1897
TspRI	CASTG	8 cut(s)	202, 643, 673, 874, 1070, 1606, 2038, 2637
Tth111I	GACNNNGTC	2 cut(s)	1484, 2429
VneI	GTGCAC	1 cut(s)	2048
VpaK11BI	GGWCC	1 cut(s)	2246
XapI	RAATTY	6 cut(s)	136, 226, 1191, 1203, 2174, 2683
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	4 cut(s)	1774, 2474, 2630, 2653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1520
XmnI	GAANNNNTTC	1 cut(s)	1445
XspI	CTAG	5 cut(s)	93, 180, 477, 714, 987
Zsp2I	ATGCAT	2 cut(s)	2301, 2757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.