Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005339

Physical Location & Seq

Genomic Coordinates Reverse (-)

56755189 .. 56758839

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTTATTCACGACCAAGAAAAGGAAGAAGAAATTTCCTATATACAAAAGTCGAAGGGAGTAGAGCACAGGAAGGCGATAGAAGCTATTAAATCGTTGGAATCATCACGTGAAGAAGGGAAGAGATTGGTTTCTGTTCGGGATATTGTTCATTGTGCGATTTCCGATTTCAGTAATTGGTTGGAAGAGCTTGGAGGGATATTGTTTGTTGTGGAGTTTGCGATTTCAGTAATTGGTTGGAAGAGGTTCTATGCAAAGGAGACTCTCAATTGTTTTTCTGCCATTGTTCCTGTATCTGTTATTTGCTATTGGTTTCGTGTTCTATTGTTATTCAGTGATGGCATCGAAAATCGTATCGAGAGAAACAAAGAGAATGCTAGCACAGTTGATAATAGTCAGAATTCTACTTCAATGAGAACTGACAAGTCAAGGAGATCAAAGAGGTGGAAAACAGCATGTCAACAGCAAGCTACTGAAGCATCAAATAGTTTCTGTGGAAATGACGAACAGAATTCTGCTGTAATTCTGAATAGGGATGTATCAGTTAATGCAGAGGATCATGAATATCATCAGGTTACATCAAGGAGGTCAAAGAGGTTAAAGACTGTGTCTCAACAACAAACTGCTGAAATGTCAAATAGTTTTTGTGCAAATGATGAACAAAATACTGCTTCAAGTACAGAAGTAAATTATCACCGGTTTCCATTAGTAGAAGATATCAGTTACCATTTTCCAGCAAAGCATGTTATATCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

252

Amino Acids

28.96

Weight (kDa)

6.1

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18900 AT1G18900 AT1G18900 AT1G18900
fragaria_vesca	FvH4_5g15730 FvH4_5g15730 FvH4_5g15730
malus_domestica	MD06G1185900.v1.1 MD14G1192100.v1.1
prunus_persica	Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1
pyrus_communis	pycom06g16530 pycom14g15980
rosa_chinensis	RchiOBHm_Chr7g0180381
rosa_laevigata	RLG00000005272
rosa_multiflora	Rmu_sc0003526.1_g000009
rosa_roxburghii	Rroxscaffold_3G00272940
rosa_rugosa	Rorug06G0432600 Rorug06G0432700 Rorug06G0432800 Rorug06G0432800
rosa_samantha	Rh7AG033200 Rh7BG033100 Rh7CG035000 Rh7DG033600
rosa_wichuraiana	Rw7G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	564
AcsI	RAATTY	3 cut(s)	33, 400, 511
AcuI	CTGAAG	1 cut(s)	495
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgeI	ACCGGT	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	411, 675
AluBI	AGCT	3 cut(s)	86, 190, 470
AluI	AGCT	3 cut(s)	86, 190, 470
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	254, 615
AlwI	GGATC	1 cut(s)	564
ApoI	RAATTY	3 cut(s)	33, 400, 511
AsiGI	ACCGGT	1 cut(s)	696
Asp700I	GAANNNNTTC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	686
AsuNHI	GCTAGC	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	254, 615
BfaI	CTAG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	351, 488
BmtI	GCTAGC	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	696
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	254, 615
BsmI	GAATGC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	434, 556
BspHI	TCATGA	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	564
BspQI	GCTCTTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	696
BssAI	RCCGGY	1 cut(s)	696
BssMI	GATC	2 cut(s)	434, 556
Bst4CI	ACNGT	2 cut(s)	385, 607
Bst6I	CTCTTC	3 cut(s)	116, 180, 236
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	379, 468
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	2 cut(s)	437, 559
BstMAI	GTCTC	2 cut(s)	254, 615
BstMBI	GATC	2 cut(s)	434, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 476
BstNSI	RCATGY	2 cut(s)	459, 746
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	379, 468
CciI	TCATGA	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	696
Csp6I	GTAC	1 cut(s)	678
CspAI	ACCGGT	1 cut(s)	696
CviAII	CATG	3 cut(s)	456, 560, 743
CviJI	RGCY	3 cut(s)	86, 190, 470
CviKI_1	RGCY	3 cut(s)	86, 190, 470
CviQI	GTAC	1 cut(s)	678
DpnI	GATC	2 cut(s)	436, 558
DpnII	GATC	2 cut(s)	434, 556
Eam1104I	CTCTTC	3 cut(s)	116, 180, 236
EarI	CTCTTC	3 cut(s)	116, 180, 236
Eco32I	GATATC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	495
Eco72I	CACGTG	1 cut(s)	110
EcoRI	GAATTC	2 cut(s)	400, 511
EcoRV	GATATC	1 cut(s)	718
FaeI	CATG	3 cut(s)	459, 563, 746
FaiI	YATR	7 cut(s)	42, 44, 252, 457, 561, 744, 749
FatI	CATG	3 cut(s)	455, 559, 742
FokI	GGATG	1 cut(s)	548
FspBI	CTAG	1 cut(s)	378
HapII	CCGG	1 cut(s)	697
Hin1II	CATG	3 cut(s)	459, 563, 746
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HinfI	GANTC	2 cut(s)	101, 262
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	4 cut(s)	166, 399, 528, 754
Hpy188III	TCNNGA	4 cut(s)	11, 140, 358, 560
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	49, 67, 110
HpyCH4III	ACNGT	2 cut(s)	385, 607
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	254, 551, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 476
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	459, 563, 746
Kzo9I	GATC	2 cut(s)	434, 556
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	55, 303, 557, 710, 747
LweI	GCATC	2 cut(s)	351, 488
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	574, 722
MalI	GATC	2 cut(s)	436, 558
MboI	GATC	2 cut(s)	434, 556
MboII	GAAGA	7 cut(s)	38, 41, 125, 133, 197, 253, 725
MfeI	CAATTG	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	8 cut(s)	33, 175, 231, 268, 400, 511, 522, 688
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	3 cut(s)	78, 162, 218
MnlI	CCTC	6 cut(s)	188, 237, 435, 547, 579, 588
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	3 cut(s)	90, 546, 599
MspI	CCGG	1 cut(s)	697
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	83, 476
NdeII	GATC	2 cut(s)	434, 556
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	459, 563, 746
NspI	RCATGY	2 cut(s)	459, 746
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	607
PinAI	ACCGGT	1 cut(s)	696
PleI	GAGTC	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	607
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	90, 546, 599
Sau3AI	GATC	2 cut(s)	434, 556
SchI	GAGTC	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	88, 112, 192, 248, 446, 472, 576, 590, 599
SfaNI	GCATC	2 cut(s)	351, 488
Sse9I	AATT	8 cut(s)	33, 175, 231, 268, 400, 511, 522, 688
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	385, 607
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	53, 345, 357
TasI	AATT	8 cut(s)	33, 175, 231, 268, 400, 511, 522, 688
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	90, 546, 599
Tru9I	TTAA	3 cut(s)	90, 546, 599
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	140, 576, 672
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	607
XapI	RAATTY	3 cut(s)	33, 400, 511
XceI	RCATGY	2 cut(s)	459, 746
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.