RLG00000006196

Protein kinase 2B, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
5111183 .. 5113195
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006196

Sequence Viewer

Length: 1365 bp
ATGGGAAATTGTTGCAGGAAACATCTTCAAGAGCCAAACTCACCGGTTCCCGTTATTTCTCAAACTCCTACTGGCGGTTCTCATCGATCCAAGAAAGTTAATAGAACAACAGTTGGAGACAGAACTAATTCAACTGTTTCCTCAACTTCTGTGGGAGAAACGAAACGTGAAAAACAGAGATCCCCACTTCAAGAGATCACACAAGTTGCTTCAAACACAGATATAGAGAAGCCTAGCAGAGAGAAAAGGCGTGGTTACCGAATTGCTCGAAAAGCTGGGACTGGGAGTTCTAATATTGAGGGAGTGAACAAGAATGATGGAGTGTTTCATGCTTACTACAACTGCAAGCTACGCTGCTTTTGTTACAGTGACTTGAAAGTGGCCACGCGCAAATTTAGCAGCAGAAATTTAATCGGGCAAGGCGGATTTGGTGATGTATATAAAGGGTATGTGAGTTACTGCACTACGGACTCTGCTGCAAAACCAAATGAGGGACTCGCAATTGCCATCAAAAGGCTCAGAAAGACCGGGACACAAGGCCATGAACAATGGGAGAATGAAATCAAATTCATGAGCAAACTAAACCATCCCAACATAGTGAAGCTACTAGGCTACTGCCATGACGGTGGGCACAGGATGTTGGTTTATGAGTACATGAGCAAAGGAAGCTTGGAGACTCAACTACTGGCAGAGAATGCGCCGCAGTTAGATTGGAGCAGAAGAATTAATGTAGCAATTGGGTTAGCTAAGGCCCTAGATTCTCTTCACAATCATGGCACGCCGGTCATTCATAGAGATCTGAAAGCTTCCAATGTCCTGTTGGATGATGACTTCAATGCTAAGCTATCAGATTTTGGCCTGGCTAGATATGGACCTCTCTGTGACCAGGACTGCATAATGACAAGGATTCTTGGCACCAAAGGCTATATTGCGCCGGAATACATAGGAACTGGACAGGTAACACTGAAAACCGATGTGTACAGCTTTGGAGTGGTGCTGTTGGAGATTTTAACAGGCTGCTGTGCCGTGAAGAAATATTCAGATGGGATGGCCGGAGATCTTATACAGTGGGCTGGACCATATCTTTGCAACAAGCAACAACTGCATCAAGTGATTGACCAGAGACTGGGAAGGAACTTCCCAAAGAAAGAGGCTCAAAAGTTTGCGGAGCTCATCCTCCAATGCCTTGCTTCAAACCCCGACAGCAGACCAACAATGACTGAAGTTGTAGCTGAGTTGAAGGACTTACAAGAAAATACAAGCAGCAGCAGTACTCCGAACTCCTACCATACTCCTACATTTACCCCATGCCCTCCTCCATACAAAATACTTTTACCTAGACGAAATGGATGTCAGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.42

Weight (kDa)

9.23

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 134 - 411 1.5e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 136 - 413 4.3e-52 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31690
malus_domestica MD13G1076200.v1.1 MD16G1076400.v1.1
prunus_persica Prupe.1G270600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0440201
rosa_laevigata RLG00000006196
rosa_multiflora Rmu_sc0001685.1_g000028
rosa_roxburghii Rroxscaffold_5G00381130
rosa_rugosa Rorug04G0325200 Rorug04G0325300.1
rosa_samantha Rh4AG376000 Rh4DG382800
rosa_wichuraiana Rw4G032180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 914
AccB7I CCANNNNNTGG 1 cut(s) 1126
AccII CGCG 1 cut(s) 388
AciI CCGC 4 cut(s) 75, 423, 701, 1166
AclWI GGATC 2 cut(s) 81, 174
AcoI YGGCCR 2 cut(s) 381, 1050
AcsI RAATTY 3 cut(s) 392, 406, 566
AcuI CTGAAG 1 cut(s) 1242
AfaI GTAC 3 cut(s) 653, 980, 1273
AfiI CCNNNNNNNGG 4 cut(s) 74, 491, 513, 1126
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 8 cut(s) 29, 132, 191, 213, 376, 835, 1194, 1240
AjnI CCWGG 2 cut(s) 858, 885
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
Alw21I GWGCWC 1 cut(s) 1173
Alw26I GTCTC 3 cut(s) 111, 668, 1117
AlwI GGATC 2 cut(s) 81, 174
AlwNI CAGNNNCTG 1 cut(s) 1126
AoxI GGCC 5 cut(s) 381, 538, 750, 856, 1050
ApeKI GCWGC 6 cut(s) 354, 399, 476, 1017, 1263, 1266
ApoI RAATTY 3 cut(s) 392, 406, 566
ArsI GACNNNNNNTTYG 3 cut(s) 1068, 1100, 1336
AseI ATTAAT 1 cut(s) 726
AsiGI ACCGGT 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 3 cut(s) 390, 700, 934
AspS9I GGNCC 3 cut(s) 751, 872, 1076
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 2 cut(s) 33, 443
AvaII GGWCC 2 cut(s) 872, 1076
BaeGI GKGCMC 1 cut(s) 633
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 914
BanII GRGCYC 1 cut(s) 1173
Bbv12I GWGCWC 1 cut(s) 1173
BbvI GCAGC 6 cut(s) 341, 411, 463, 1004, 1275, 1278
BccI CCATC 5 cut(s) 311, 515, 594, 1037, 1042
BceAI ACGGC 1 cut(s) 1010
BciT130I CCWGG 2 cut(s) 860, 887
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 111, 668, 1117
BfaI CTAG 5 cut(s) 234, 608, 755, 864, 1338
BglII AGATCT 2 cut(s) 796, 1057
BisI GCNGC 7 cut(s) 355, 400, 477, 701, 1018, 1264, 1267
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 7 cut(s) 356, 401, 478, 702, 1019, 1265, 1268
BmcAI AGTACT 1 cut(s) 1273
Bme1390I CCNGG 3 cut(s) 529, 860, 887
Bme18I GGWCC 2 cut(s) 872, 1076
BmgT120I GGNCC 3 cut(s) 751, 872, 1076
BmiI GGNNCC 2 cut(s) 48, 916
BmrFI CCNGG 3 cut(s) 529, 860, 887
BmrI ACTGGG 2 cut(s) 291, 1136
BmsI GCATC 1 cut(s) 1114
BmuI ACTGGG 2 cut(s) 291, 1136
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu10I CCTNAGC 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 840
BpuMI CCSGG 1 cut(s) 529
Bsa29I ATCGAT 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 491, 513, 1126
Bse118I RCCGGY 2 cut(s) 43, 781
Bse1I ACTGG 5 cut(s) 76, 286, 690, 955, 1131
BseBI CCWGG 2 cut(s) 860, 887
BseCI ATCGAT 1 cut(s) 85
BseGI GGATG 6 cut(s) 586, 642, 829, 1053, 1173, 1355
BseLI CCNNNNNNNGG 4 cut(s) 74, 491, 513, 1126
BseMII CTCAG 2 cut(s) 532, 1224
BseNI ACTGG 5 cut(s) 76, 286, 690, 955, 1131
BseRI GAGGAG 1 cut(s) 1305
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 6 cut(s) 341, 411, 463, 1004, 1275, 1278
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 5 cut(s) 383, 540, 752, 858, 1052
BshNI GGYRCC 1 cut(s) 914
BshTI ACCGGT 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 1173
BsiSI CCGG 5 cut(s) 44, 528, 782, 935, 1053
BslFI GGGAC 3 cut(s) 292, 507, 544
BslI CCNNNNNNNGG 4 cut(s) 74, 491, 513, 1126
BsmAI GTCTC 3 cut(s) 111, 668, 1117
BsmFI GGGAC 3 cut(s) 292, 507, 544
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 5 cut(s) 383, 540, 752, 858, 1052
Bsp1286I GDGCHC 2 cut(s) 633, 1173
Bsp1407I TGTACA 1 cut(s) 978
Bsp143I GATC 5 cut(s) 86, 179, 195, 796, 1057
Bsp1720I GCTNAGC 1 cut(s) 840
BspACI CCGC 4 cut(s) 75, 423, 701, 1166
BspANI GGCC 5 cut(s) 383, 540, 752, 858, 1052
BspCNI CTCAG 2 cut(s) 531, 1225
BspDI ATCGAT 1 cut(s) 85
BspFNI CGCG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 48, 916
BspPI GGATC 2 cut(s) 81, 174
BspT107I GGYRCC 1 cut(s) 914
BsrFI RCCGGY 2 cut(s) 43, 781
BsrGI TGTACA 1 cut(s) 978
BsrI ACTGG 5 cut(s) 76, 286, 690, 955, 1131
BssAI RCCGGY 2 cut(s) 43, 781
BssMI GATC 5 cut(s) 86, 179, 195, 796, 1057
Bst2UI CCWGG 2 cut(s) 860, 887
Bst4CI ACNGT 5 cut(s) 112, 136, 368, 626, 1068
Bst6I CTCTTC 1 cut(s) 768
BstAPI GCANNNNNTGC 2 cut(s) 695, 1102
BstAUI TGTACA 1 cut(s) 978
BstC8I GCNNGC 2 cut(s) 347, 779
BstDEI CTNAG 4 cut(s) 518, 747, 840, 1233
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 6 cut(s) 586, 642, 829, 1053, 1173, 1355
BstFNI CGCG 1 cut(s) 388
BstHHI GCGC 3 cut(s) 390, 700, 934
BstKTI GATC 5 cut(s) 89, 182, 198, 799, 1060
BstMAI GTCTC 3 cut(s) 111, 668, 1117
BstMBI GATC 5 cut(s) 86, 179, 195, 796, 1057
BstMWI GCNNNNNNNGC 7 cut(s) 272, 351, 396, 666, 695, 921, 1102
BstNI CCWGG 2 cut(s) 860, 887
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 527, 858, 885
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 6 cut(s) 341, 411, 463, 1004, 1275, 1278
BstX2I RGATCY 3 cut(s) 179, 796, 1057
BstXI CCANNNNNNTGG 1 cut(s) 626
BstYI RGATCY 3 cut(s) 179, 796, 1057
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 5 cut(s) 383, 540, 752, 858, 1052
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 6 cut(s) 586, 642, 829, 1053, 1173, 1355
BtsIMutI CAGTG 3 cut(s) 373, 962, 1073
Cac8I GCNNGC 2 cut(s) 347, 779
CaiI CAGNNNCTG 1 cut(s) 1126
CciI TCATGA 1 cut(s) 570
CfoI GCGC 3 cut(s) 390, 700, 934
Cfr10I RCCGGY 2 cut(s) 43, 781
Cfr13I GGNCC 3 cut(s) 751, 872, 1076
ClaI ATCGAT 1 cut(s) 85
Csp6I GTAC 3 cut(s) 652, 979, 1272
CspAI ACCGGT 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 7 cut(s) 329, 542, 571, 620, 655, 773, 1308
CviQI GTAC 3 cut(s) 652, 979, 1272
DdeI CTNAG 4 cut(s) 518, 747, 840, 1233
DpnI GATC 5 cut(s) 88, 181, 197, 798, 1059
DpnII GATC 5 cut(s) 86, 179, 195, 796, 1057
EaeI YGGCCR 2 cut(s) 381, 1050
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 1171
Eco24I GRGCYC 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 872, 1076
Eco53kI GAGCTC 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 1242
Eco91I GGTNACC 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 1171
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 858, 885
EcoT38I GRGCYC 1 cut(s) 1173
FaeI CATG 7 cut(s) 332, 545, 574, 623, 658, 776, 1311
FaqI GGGAC 3 cut(s) 292, 507, 544
FatI CATG 7 cut(s) 328, 541, 570, 619, 654, 772, 1307
Fnu4HI GCNGC 7 cut(s) 355, 400, 477, 701, 1018, 1264, 1267
FokI GGATG 5 cut(s) 573, 649, 836, 1060, 1160
FriOI GRGCYC 1 cut(s) 1173
Fsp4HI GCNGC 7 cut(s) 355, 400, 477, 701, 1018, 1264, 1267
FspBI CTAG 5 cut(s) 234, 608, 755, 864, 1338
GlaI GCGC 3 cut(s) 389, 699, 933
GluI GCNGC 7 cut(s) 355, 400, 477, 701, 1018, 1264, 1267
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 5 cut(s) 383, 540, 752, 858, 1052
HapII CCGG 5 cut(s) 44, 528, 782, 935, 1053
HhaI GCGC 3 cut(s) 390, 700, 934
Hin1II CATG 7 cut(s) 332, 545, 574, 623, 658, 776, 1311
Hin6I GCGC 3 cut(s) 388, 698, 932
HinP1I GCGC 3 cut(s) 388, 698, 932
HindIII AAGCTT 2 cut(s) 667, 804
HinfI GANTC 5 cut(s) 470, 495, 676, 758, 907
HpaII CCGG 5 cut(s) 44, 528, 782, 935, 1053
HphI GGTGA 2 cut(s) 33, 443
Hpy166II GTNNAC 2 cut(s) 307, 979
Hpy188I TCNGA 6 cut(s) 521, 801, 850, 1042, 1278, 1356
Hpy188III TCNNGA 3 cut(s) 29, 191, 571
Hpy8I GTNNAC 2 cut(s) 307, 979
HpyAV CCTTC 2 cut(s) 1125, 1234
HpyCH4III ACNGT 5 cut(s) 112, 136, 368, 626, 1068
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 7 cut(s) 15, 345, 462, 479, 894, 1089, 1105
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 351, 396, 666, 695, 921, 1102
HpyF3I CTNAG 4 cut(s) 518, 747, 840, 1233
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 7 cut(s) 332, 545, 574, 623, 658, 776, 1311
HspAI GCGC 3 cut(s) 388, 698, 932
Kzo9I GATC 5 cut(s) 86, 179, 195, 796, 1057
LmnI GCTCC 2 cut(s) 714, 1168
Lsp1109I GCAGC 6 cut(s) 341, 411, 463, 1004, 1275, 1278
LweI GCATC 1 cut(s) 1114
MaeI CTAG 5 cut(s) 234, 608, 755, 864, 1338
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 6 cut(s) 254, 362, 368, 455, 881, 958
MalI GATC 5 cut(s) 88, 181, 197, 798, 1059
MboI GATC 5 cut(s) 86, 179, 195, 796, 1057
MboII GAAGA 4 cut(s) 17, 732, 755, 1042
MfeI CAATTG 2 cut(s) 501, 735
MflI RGATCY 3 cut(s) 179, 796, 1057
MhlI GDGCHC 2 cut(s) 633, 1173
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 9 cut(s) 7, 127, 261, 392, 406, 501, 566, 723, 735
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 3 cut(s) 464, 489, 670
MmeI TCCRAC 3 cut(s) 94, 801, 981
MnlI CCTC 8 cut(s) 151, 292, 484, 885, 1144, 1187, 1323, 1326
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 127
MscI TGGCCA 1 cut(s) 383
MseI TTAA 4 cut(s) 99, 410, 726, 1010
MslI CAYNNNNRTG 2 cut(s) 624, 771
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 5 cut(s) 44, 528, 782, 935, 1053
MspR9I CCNGG 3 cut(s) 529, 860, 887
MunI CAATTG 2 cut(s) 501, 735
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 2 cut(s) 860, 887
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 7 cut(s) 272, 351, 396, 666, 695, 921, 1102
NciI CCSGG 1 cut(s) 529
NdeII GATC 5 cut(s) 86, 179, 195, 796, 1057
NlaIII CATG 7 cut(s) 332, 545, 574, 623, 658, 776, 1311
NlaIV GGNNCC 2 cut(s) 48, 916
NmuCI GTSAC 2 cut(s) 368, 881
PagI TCATGA 1 cut(s) 570
PctI GAATGC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 758, 907
PflMI CCANNNNNTGG 1 cut(s) 1126
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 7 cut(s) 356, 401, 478, 702, 1019, 1265, 1268
PleI GAGTC 3 cut(s) 464, 489, 670
PpsI GAGTC 3 cut(s) 464, 489, 670
PshBI ATTAAT 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 1173
Psp6I CCWGG 2 cut(s) 858, 885
PspEI GGTNACC 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 858, 885
PspN4I GGNNCC 2 cut(s) 48, 916
PspPI GGNCC 3 cut(s) 751, 872, 1076
PstNI CAGNNNCTG 1 cut(s) 1126
PsuI RGATCY 3 cut(s) 179, 796, 1057
RsaI GTAC 3 cut(s) 653, 980, 1273
RsaNI GTAC 3 cut(s) 652, 979, 1272
RseI CAYNNNNRTG 2 cut(s) 624, 771
SacI GAGCTC 1 cut(s) 1173
SaqAI TTAA 4 cut(s) 99, 410, 726, 1010
SatI GCNGC 7 cut(s) 355, 400, 477, 701, 1018, 1264, 1267
Sau3AI GATC 5 cut(s) 86, 179, 195, 796, 1057
Sau96I GGNCC 3 cut(s) 751, 872, 1076
ScaI AGTACT 1 cut(s) 1273
SchI GAGTC 3 cut(s) 464, 489, 670
ScrFI CCNGG 3 cut(s) 529, 860, 887
SduI GDGCHC 2 cut(s) 633, 1173
SfaNI GCATC 1 cut(s) 1114
SinI GGWCC 2 cut(s) 872, 1076
SmiMI CAYNNNNRTG 2 cut(s) 624, 771
Sse9I AATT 9 cut(s) 7, 127, 261, 392, 406, 501, 566, 723, 735
SsiI CCGC 4 cut(s) 75, 423, 701, 1166
SspI AATATT 2 cut(s) 295, 1037
SspMI CTAG 5 cut(s) 234, 608, 755, 864, 1338
SstI GAGCTC 1 cut(s) 1173
StyD4I CCNGG 3 cut(s) 527, 858, 885
TaaI ACNGT 5 cut(s) 112, 136, 368, 626, 1068
TaiI ACGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 85, 268
TasI AATT 9 cut(s) 7, 127, 261, 392, 406, 501, 566, 723, 735
TatI WGTACW 3 cut(s) 651, 978, 1271
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 2 cut(s) 758, 907
Tru1I TTAA 4 cut(s) 99, 410, 726, 1010
Tru9I TTAA 4 cut(s) 99, 410, 726, 1010
TscAI CASTG 3 cut(s) 373, 969, 1073
TseFI GTSAC 2 cut(s) 368, 881
TseI GCWGC 6 cut(s) 354, 399, 476, 1017, 1263, 1266
Tsp45I GTSAC 2 cut(s) 368, 881
TspDTI ATGAA 5 cut(s) 317, 558, 559, 573, 779
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 3 cut(s) 373, 969, 1073
Van91I CCANNNNNTGG 1 cut(s) 1126
VpaK11BI GGWCC 2 cut(s) 872, 1076
VspI ATTAAT 1 cut(s) 726
XapI RAATTY 3 cut(s) 392, 406, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 5 cut(s) 234, 608, 755, 864, 1338
ZrmI AGTACT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.