Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017292

Physical Location & Seq

Genomic Coordinates Reverse (-)

60014821 .. 60015900

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG382800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGAAATTGTTGCAGAAAACATCTTCAAGAGCCAAACTCACCGGTTCACGTTATTTCTCAAACTCCTACTGGCGGTTCTCATCGATCCAAGAAAGTTAATAGAACAACAGTTGGAGACAGAACTACTTCAACTGTTTCCTCAACTTCTGTGGGAGAAACGAAGCGTGAAAAACAGAGATCCCCACTTCAAGAGATCACACATGTTGCTTCAAACACAGATATAGAAAAGCCTAGCAGAGAGAAAAGGCGTGGTTACCAAATTGCTCGAAAAGCTGGGAGTTCTAATATTGAGGGAGTGAACAAGAATGATGGAGTGTTTCATGCTTACTACAACTGCAAGCTACGCTGCTTTTGTTACAGTGACTTGAAAGTGGCCACGCGCAAATTTAGCAGCAGAAATTTAATCGGGCAAGGCGGATTTGGTGATGTATATAAAGGGTATGTGAGTTACTGCACTATGGACTCTGCTGCAAAACCAAATAAGGGACTCGCAATAGCCATCAAAAGGCTCAGAAAGACCGGGACACAAGGCCATGAACAATGGGAGAATGAAATCAAATTCATGTGCAAACTAAACCATCCCAACATAGTGAAGCTACTAGGCTACTGCCATGACGGTGGGCACAGGATGTTGGTTTATGAGTACATGAGCAAAGGAAGCTTGGAGACTCAACTACTGGCAGGTGAGAGTTTAGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

26.15

Weight (kDa)

9.58

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	132 - 226	3.1e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	134 - 227	2.7e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31690
malus_domestica	MD13G1076200.v1.1 MD16G1076400.v1.1
prunus_persica	Prupe.1G270600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440201
rosa_laevigata	RLG00000006196
rosa_multiflora	Rmu_sc0001685.1_g000028
rosa_roxburghii	Rroxscaffold_5G00381130
rosa_rugosa	Rorug04G0325200 Rorug04G0325300.1
rosa_samantha	Rh4AG376000 Rh4DG382800
rosa_wichuraiana	Rw4G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccII	CGCG	1 cut(s)	382
AciI	CCGC	2 cut(s)	75, 417
AclWI	GGATC	2 cut(s)	81, 174
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	386, 400, 560
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	3 cut(s)	74, 485, 507
AflIII	ACRYGT	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	29, 132, 191, 213, 370
AluBI	AGCT	4 cut(s)	275, 343, 598, 663
AluI	AGCT	4 cut(s)	275, 343, 598, 663
Alw26I	GTCTC	2 cut(s)	111, 662
AlwI	GGATC	2 cut(s)	81, 174
AoxI	GGCC	2 cut(s)	375, 532
ApeKI	GCWGC	3 cut(s)	348, 393, 470
ApoI	RAATTY	3 cut(s)	386, 400, 560
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	33, 437, 698
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	335, 405, 457
BccI	CCATC	3 cut(s)	305, 509, 588
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	111, 662
BfaI	CTAG	2 cut(s)	234, 602
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	3 cut(s)	349, 394, 471
BlsI	GCNGC	3 cut(s)	350, 395, 472
Bme1390I	CCNGG	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuMI	CCSGG	1 cut(s)	523
Bsa29I	ATCGAT	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 485, 507
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	76, 684
BseCI	ATCGAT	1 cut(s)	85
BseGI	GGATG	2 cut(s)	580, 636
BseLI	CCNNNNNNNGG	3 cut(s)	74, 485, 507
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	2 cut(s)	76, 684
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	335, 405, 457
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	377, 534
BshTI	ACCGGT	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	44, 522
BslFI	GGGAC	2 cut(s)	501, 538
BslI	CCNNNNNNNGG	3 cut(s)	74, 485, 507
BsmAI	GTCTC	2 cut(s)	111, 662
BsmFI	GGGAC	2 cut(s)	501, 538
BsnI	GGCC	2 cut(s)	377, 534
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	4 cut(s)	86, 179, 195, 697
BspACI	CCGC	2 cut(s)	75, 417
BspANI	GGCC	2 cut(s)	377, 534
BspCNI	CTCAG	1 cut(s)	525
BspDI	ATCGAT	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	81, 174
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	76, 684
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	4 cut(s)	86, 179, 195, 697
Bst4CI	ACNGT	4 cut(s)	112, 136, 362, 620
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	512
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	580, 636
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	4 cut(s)	89, 182, 198, 700
BstMAI	GTCTC	2 cut(s)	111, 662
BstMBI	GATC	4 cut(s)	86, 179, 195, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 345, 390, 660
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	521
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	335, 405, 457
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	377, 534
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	580, 636
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	646
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	6 cut(s)	203, 323, 536, 565, 614, 649
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	4 cut(s)	88, 181, 197, 699
DpnII	GATC	4 cut(s)	86, 179, 195, 697
EaeI	YGGCCR	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
FaeI	CATG	6 cut(s)	206, 326, 539, 568, 617, 652
FaqI	GGGAC	2 cut(s)	501, 538
FatI	CATG	6 cut(s)	202, 322, 535, 564, 613, 648
Fnu4HI	GCNGC	3 cut(s)	349, 394, 471
FokI	GGATG	2 cut(s)	567, 643
Fsp4HI	GCNGC	3 cut(s)	349, 394, 471
FspBI	CTAG	2 cut(s)	234, 602
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	3 cut(s)	349, 394, 471
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	377, 534
HapII	CCGG	2 cut(s)	44, 522
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	6 cut(s)	206, 326, 539, 568, 617, 652
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	3 cut(s)	464, 489, 670
HpaII	CCGG	2 cut(s)	44, 522
HphI	GGTGA	3 cut(s)	33, 437, 698
Hpy166II	GTNNAC	2 cut(s)	49, 301
Hpy188I	TCNGA	1 cut(s)	515
Hpy188III	TCNNGA	2 cut(s)	29, 191
Hpy8I	GTNNAC	2 cut(s)	49, 301
HpyCH4III	ACNGT	4 cut(s)	112, 136, 362, 620
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	15, 339, 456, 473, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 345, 390, 660
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	206, 326, 539, 568, 617, 652
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	86, 179, 195, 697
LpnPI	CCDG	7 cut(s)	57, 57, 261, 535, 613, 665, 669
Lsp1109I	GCAGC	3 cut(s)	335, 405, 457
MaeI	CTAG	2 cut(s)	234, 602
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	4 cut(s)	254, 356, 362, 449
MalI	GATC	4 cut(s)	88, 181, 197, 699
MboI	GATC	4 cut(s)	86, 179, 195, 697
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	5 cut(s)	7, 261, 386, 400, 560
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	458, 483, 664
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	151, 286
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	99, 404
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	2 cut(s)	44, 522
MspR9I	CCNGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	4 cut(s)	272, 345, 390, 660
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	86, 179, 195, 697
NlaIII	CATG	6 cut(s)	206, 326, 539, 568, 617, 652
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	674
PciI	ACATGT	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	127
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	350, 395, 472
PleI	GAGTC	3 cut(s)	458, 483, 664
PpsI	GAGTC	3 cut(s)	458, 483, 664
PscI	ACATGT	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	99, 404
SatI	GCNGC	3 cut(s)	349, 394, 471
Sau3AI	GATC	4 cut(s)	86, 179, 195, 697
SchI	GAGTC	3 cut(s)	458, 483, 664
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	6 cut(s)	54, 277, 345, 600, 665, 688
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	5 cut(s)	7, 261, 386, 400, 560
SsiI	CCGC	2 cut(s)	75, 417
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	234, 602
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	4 cut(s)	112, 136, 362, 620
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	85, 268
TasI	AATT	5 cut(s)	7, 261, 386, 400, 560
TatI	WGTACW	1 cut(s)	645
Tru1I	TTAA	2 cut(s)	99, 404
Tru9I	TTAA	2 cut(s)	99, 404
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	348, 393, 470
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	311, 552, 553, 567
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	3 cut(s)	386, 400, 560
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	2 cut(s)	234, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.