RLG00000007622

translocase of chloroplast 159

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
19101451 .. 19104621
3171 bp
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UTR
Exon/CDS
Intron
RLM00000007622

Sequence Viewer

Length: 2175 bp
ATGGACTCGTCAAAGCCTTATGTTCGACTCTCTGCAGCACAAGACAACTCAGGAGCTTGGAACCCACAACAGAAGCTTGCAGTTTCTAGTTCCTCTTCACTTTCAGGTTCTCTTCCTATCCGAGCTCGTCTTACTCTAGATTCTGACTCTGACTTTGAAATCAACGGTGGTCATGAATTGGGTTATATTACTAGTAGTAGCAACATTAGTGTTGGTTCCGAGAGTGGGTTTGTGAGTGGGGAGGAGTTTGAAACGGCGTCGGAGAGGCCCTTTGTGGCGGTGGAGTCGGGTGAGGAAGCCCTTGAAGAGAGTGGCTCTGTTGAAAGATATGAGGTTTTTTGGCCTTCTGTGTCTGACCCAGATGAATATGAAGAAGCTGTTGTGGGTAAAGTTATGGTGGGTGGTCCGAATTCGGAGGAGGTTAGGCCCATTGCAAATTTGTCATGGGAGAGTGATGGGAGTGAGGTAGTGGGTGAGGAGATTGAAGAAGTGAGTGAAGATGAAGGTGATGGGTTGTTGGGTCATGTTAAGGCTCTGGTTTATGGGTTTGTGGAGCAGGTTGGTATTCCACCTAGAGTTAAGGTTTCTGAGGTTGAGGAAGGAGAAGAAGATGAGTCCTTGGTTGTTAAAGAATCAAGTTTTGTTGAAGGTGGAAATGGAGATTATGTTCAAGTGGAATGCGGTGAGGATTGTAGTTTTGACACTGCTGAGTCCAGTGAAACGAACTCTGTTGAGTTGAATTTGAATGTATTGGAAGGTGGAGAGAAAGATAAGTATGTTGAAGAAGAGTTCTTTGTGCATGAAAGTTCCGTGAAATTGGATGAATTGGATGTTGAGGCTAACGAGAATCTGAGTATGGGTAATAGTCATATATCTGAAGCTGAGGAAGATAAAGTTGAATATAGTGATTCCTTTAACTCAATCACACCAAGGTCTGTCTTAGGTGAGAATGTGGCCACTGAACTCGAGATTGAGGATCCGATTGCTAATGGGAAGGACTTGATTTTTACCGGAGATGCTGGTGTGAAATTTCAAGGCAGTGAAGCCAAAGTGGAAGTCCCTCTCAAGGAGAAGAAGGGTTACACTATGGAACAGCACCCAACCAGCTTGGGTCTGTATGTGGATAGTGTTGCACATGGGTTTCAGGTTGATGAGGTTGAAAAAGAAGTAGAAGAAGAACACAAGTTAGTGATGGGGAAAGGCTCCTCCAATTCCTTCATGAAGCAGTCTGAGCCGGCCACAGAATTAAAGGGTGTTGAGAATTCAGACTTGAAAGCCATTGTTAAAGGTCAAACTGGGGAATCCATTCAAGCTGAATGGACTGAAGATAATGGTCTTGGTGGTGTGGAAACCAAGGAACCAGATATTTTGGAGAAAGCCACGAGTATGGCAGAAGAGTCTATAATGCCTTCCCCAAAAAGCAAAACGAGTGATGTTGATTTTAGCGAAAGTAATGGGGCATTGGATAGAGGAGTTCATTCAGAATGTGATTTTGATGTTGAGGGGAGTGGAAATCAGATAACGGACTCCAATTCATATTCACAGCCAAATCCAATTCTGAAGATCGTATATGTGAATAAACGCAATTTGTCTGAAGCTGCTGAGGGTGATGGATATGTACTGTGTTCCGATTTCCTTGAATCAATCACACCAAGTTCCAGTGTGATCCATGAACACATTTTCGGTGGTGAAACCGAGGTAAAAAATTGTAAAATAGGCAGAAGATTTGCTGGAGTAACCGTAACTCACTTGGGTGAGGATGCCACCACCGGACTCAAGATTGAGGATCAGATTGCTATTGGGAAGGGCTTGGTGATGGCTGGAAGTGCTGGAGCTGTGCAATGCCAAGGTGACATAGCATGTGGAGCCAAACTGGAATTGTGCCTCAAGGAGAAGAATTTCCCTATAAAGCAGGACCAAACTAGCTTGGGTCTGTCTTTGATGAAGTGGGGTGGTGGTCTTCTTGTAACAACCGATATACTGTCTCGGTTCTCTGTTGGAAGTTCTAAAATAGCTGTTCATGTTGTATTGGACAACAAGCAGAGGGGAAAGATTGCTATAAGAACCAGCAACTGCGATAAAATCCCAAGTGCAGGGATTATTGGGATTCTCTCAATTGCAGTTTCAGTCTTCGGGTTTTTCCGTTCAAGATTCAGTGTTCAGAACTCAAGATAA

Protein Analysis

725

Amino Acids

77.88

Weight (kDa)

4.39

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOC159_MAD PF11886 560 - 710 1.5e-37 Translocase of chloroplast 159/132, membrane anchor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AciI CCGC 2 cut(s) 278, 681
AclWI GGATC 4 cut(s) 971, 984, 1660, 1794
AcoI YGGCCR 2 cut(s) 954, 1236
AcsI RAATTY 6 cut(s) 409, 436, 739, 1028, 1261, 1897
AcuI CTGAAG 4 cut(s) 897, 1344, 1580, 1614
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 1620
AfiI CCNNNNNNNGG 3 cut(s) 225, 1066, 2093
AhlI ACTAGT 1 cut(s) 191
AleI CACNNNNGTG 1 cut(s) 1752
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 1989
AlwI GGATC 4 cut(s) 971, 984, 1660, 1794
AlwNI CAGNNNCTG 1 cut(s) 2073
Ama87I CYCGRG 1 cut(s) 965
AoxI GGCC 5 cut(s) 266, 341, 425, 954, 1236
ApeKI GCWGC 2 cut(s) 35, 1598
ApoI RAATTY 6 cut(s) 409, 436, 739, 1028, 1261, 1897
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 1041, 1073
Asp700I GAANNNNTTC 2 cut(s) 1305, 1898
AspS9I GGNCC 4 cut(s) 267, 404, 426, 1915
AvaI CYCGRG 1 cut(s) 965
AvaII GGWCC 2 cut(s) 404, 1915
BalI TGGCCA 1 cut(s) 956
BamHI GGATCC 1 cut(s) 976
BanII GRGCYC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 1064, 1096
BauI CACGAG 1 cut(s) 1381
BbsI GAAGAC 2 cut(s) 1952, 2122
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 2 cut(s) 882, 1602
BbvI GCAGC 2 cut(s) 47, 1585
BccI CCATC 5 cut(s) 449, 503, 1186, 1604, 1810
BceAI ACGGC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 1989
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 5 cut(s) 87, 137, 192, 573, 1923
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 547
BisI GCNGC 2 cut(s) 36, 1599
BlsI GCNGC 2 cut(s) 37, 1600
Bme18I GGWCC 2 cut(s) 404, 1915
BmeT110I CYCGRG 1 cut(s) 965
BmgT120I GGNCC 4 cut(s) 267, 404, 426, 1915
BmiI GGNNCC 6 cut(s) 62, 217, 978, 1204, 1359, 1867
BmrI ACTGGG 1 cut(s) 1305
BmsI GCATC 2 cut(s) 1006, 1750
BmuI ACTGGG 1 cut(s) 1305
BpiI GAAGAC 2 cut(s) 1952, 2122
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 2 cut(s) 1752, 1851
Bpu10I CCTNAGC 2 cut(s) 882, 1602
BpuEI CTTGAG 4 cut(s) 1049, 1760, 1871, 2152
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 618, 929, 1353, 1695, 1846
BsaWI WCCGGW 2 cut(s) 1010, 1769
BsaXI ACNNNNNCTCC 4 cut(s) 651, 681, 1725, 1755
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 1066, 2093
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 4 cut(s) 714, 1300, 1659, 1878
Bse3DI GCAATG 2 cut(s) 429, 1847
BseDI CCNNGG 5 cut(s) 618, 929, 1353, 1695, 1846
BseGI GGATG 3 cut(s) 826, 835, 1765
BseLI CCNNNNNNNGG 3 cut(s) 225, 1066, 2093
BseMI GCAATG 2 cut(s) 429, 1847
BseMII CTCAG 7 cut(s) 63, 579, 699, 842, 873, 1221, 1593
BseNI ACTGG 4 cut(s) 714, 1300, 1659, 1878
BseRI GAGGAG 5 cut(s) 257, 431, 491, 1195, 1485
BseXI GCAGC 2 cut(s) 47, 1585
BsgI GTGCAG 1 cut(s) 2112
BshFI GGCC 5 cut(s) 268, 343, 427, 956, 1238
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 3 cut(s) 1011, 1235, 1770
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 3 cut(s) 225, 1066, 2093
BsmAI GTCTC 1 cut(s) 1989
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 5 cut(s) 268, 343, 427, 956, 1238
BsoBI CYCGRG 1 cut(s) 965
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 4 cut(s) 976, 1563, 1665, 1786
BspACI CCGC 2 cut(s) 278, 681
BspANI GGCC 5 cut(s) 268, 343, 427, 956, 1238
BspCNI CTCAG 7 cut(s) 62, 580, 700, 843, 874, 1222, 1594
BspHI TCATGA 2 cut(s) 172, 1218
BspLI GGNNCC 6 cut(s) 62, 217, 978, 1204, 1359, 1867
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 4 cut(s) 971, 984, 1660, 1794
BsrDI GCAATG 2 cut(s) 429, 1847
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 4 cut(s) 714, 1300, 1659, 1878
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 5 cut(s) 618, 929, 1353, 1695, 1846
BssMI GATC 4 cut(s) 976, 1563, 1665, 1786
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 1381
BssT1I CCWWGG 4 cut(s) 618, 929, 1353, 1846
Bst2BI CACGAG 1 cut(s) 1381
Bst4CI ACNGT 4 cut(s) 167, 1623, 1741, 1983
Bst6I CTCTTC 5 cut(s) 100, 117, 300, 780, 1389
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 78, 1236
BstDEI CTNAG 8 cut(s) 49, 588, 708, 851, 882, 940, 1230, 1602
BstF5I GGATG 3 cut(s) 826, 835, 1765
BstKTI GATC 4 cut(s) 979, 1566, 1668, 1789
BstMAI GTCTC 1 cut(s) 1989
BstMBI GATC 4 cut(s) 976, 1563, 1665, 1786
BstMWI GCNNNNNNNGC 3 cut(s) 1231, 1826, 1865
BstNSI RCATGY 1 cut(s) 1863
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 47, 1585
BstV2I GAAGAC 2 cut(s) 1952, 2122
BstX2I RGATCY 1 cut(s) 976
BstXI CCANNNNNNTGG 1 cut(s) 1387
BstYI RGATCY 1 cut(s) 976
BsuRI GGCC 5 cut(s) 268, 343, 427, 956, 1238
BtsCI GGATG 3 cut(s) 826, 835, 1765
BtsI GCAGTG 2 cut(s) 702, 1045
BtsIMutI CAGTG 6 cut(s) 702, 721, 957, 1045, 1666, 2161
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 78, 1236
CaiI CAGNNNCTG 1 cut(s) 2073
CciI TCATGA 2 cut(s) 172, 1218
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 4 cut(s) 267, 404, 426, 1915
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 1619
CviAII CATG 9 cut(s) 173, 444, 524, 800, 1136, 1219, 1670, 1860, 2021
CviQI GTAC 1 cut(s) 1619
DdeI CTNAG 8 cut(s) 49, 588, 708, 851, 882, 940, 1230, 1602
DpnI GATC 4 cut(s) 978, 1565, 1667, 1788
DpnII GATC 4 cut(s) 976, 1563, 1665, 1786
EaeI YGGCCR 2 cut(s) 954, 1236
Eam1104I CTCTTC 5 cut(s) 100, 117, 300, 780, 1389
EarI CTCTTC 5 cut(s) 100, 117, 300, 780, 1389
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 4 cut(s) 618, 929, 1353, 1846
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 404, 1915
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 4 cut(s) 897, 1344, 1580, 1614
Eco88I CYCGRG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 2 cut(s) 409, 1261
EcoT14I CCWWGG 4 cut(s) 618, 929, 1353, 1846
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 4 cut(s) 618, 929, 1353, 1846
FaeI CATG 9 cut(s) 176, 447, 527, 803, 1139, 1222, 1673, 1863, 2024
FaqI GGGAC 1 cut(s) 1043
FatI CATG 9 cut(s) 172, 443, 523, 799, 1135, 1218, 1669, 1859, 2020
Fnu4HI GCNGC 2 cut(s) 36, 1599
FokI GGATG 3 cut(s) 833, 842, 1772
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 36, 1599
FspBI CTAG 5 cut(s) 87, 137, 192, 573, 1923
GluI GCNGC 2 cut(s) 36, 1599
GsuI CTGGAG 2 cut(s) 1752, 1851
HaeIII GGCC 5 cut(s) 268, 343, 427, 956, 1238
HapII CCGG 3 cut(s) 1011, 1235, 1770
HgaI GACGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 9 cut(s) 176, 447, 527, 803, 1139, 1222, 1673, 1863, 2024
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 3 cut(s) 1011, 1235, 1770
Hpy188III TCNNGA 8 cut(s) 51, 137, 173, 967, 1219, 1777, 2148, 2169
Hpy99I CGWCG 1 cut(s) 262
HpyCH4III ACNGT 4 cut(s) 167, 1623, 1741, 1983
HpyCH4V TGCA 8 cut(s) 35, 80, 434, 799, 1133, 1840, 2093, 2120
HpyF10VI GCNNNNNNNGC 3 cut(s) 1231, 1826, 1865
HpyF3I CTNAG 8 cut(s) 49, 588, 708, 851, 882, 940, 1230, 1602
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 9 cut(s) 176, 447, 527, 803, 1139, 1222, 1673, 1863, 2024
KroI GCCGGC 1 cut(s) 1234
KroNI GCCGGC 1 cut(s) 1236
Kzo9I GATC 4 cut(s) 976, 1563, 1665, 1786
LmnI GCTCC 5 cut(s) 53, 553, 1208, 1832, 1865
Lsp1109I GCAGC 2 cut(s) 47, 1585
LweI GCATC 2 cut(s) 1006, 1750
MaeI CTAG 5 cut(s) 87, 137, 192, 573, 1923
MaeIII GTNAC 5 cut(s) 1079, 1735, 1741, 1850, 1966
MalI GATC 4 cut(s) 978, 1565, 1667, 1788
MboI GATC 4 cut(s) 976, 1563, 1665, 1786
MfeI CAATTG 1 cut(s) 2115
MflI RGATCY 1 cut(s) 976
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 8 cut(s) 21, 140, 293, 623, 719, 1406, 1520, 1767
MmeI TCCRAC 2 cut(s) 240, 1978
Mox20I TGGCCA 1 cut(s) 956
MroNI GCCGGC 1 cut(s) 1234
MroXI GAANNNNTTC 2 cut(s) 1305, 1898
MscI TGGCCA 1 cut(s) 956
MseI TTAA 6 cut(s) 528, 579, 627, 915, 1247, 1284
MslI CAYNNNNRTG 2 cut(s) 1385, 1752
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 3 cut(s) 1011, 1235, 1770
MunI CAATTG 1 cut(s) 2115
Mva1269I GAATGC 1 cut(s) 683
MwoI GCNNNNNNNGC 3 cut(s) 1231, 1826, 1865
NaeI GCCGGC 1 cut(s) 1236
NdeII GATC 4 cut(s) 976, 1563, 1665, 1786
NgoMIV GCCGGC 1 cut(s) 1234
NlaIII CATG 9 cut(s) 176, 447, 527, 803, 1139, 1222, 1673, 1863, 2024
NlaIV GGNNCC 6 cut(s) 62, 217, 978, 1204, 1359, 1867
NmuCI GTSAC 1 cut(s) 1850
NspI RCATGY 1 cut(s) 1863
OliI CACNNNNGTG 1 cut(s) 1752
PaeR7I CTCGAG 1 cut(s) 965
PagI TCATGA 2 cut(s) 172, 1218
PctI GAATGC 1 cut(s) 683
PdiI GCCGGC 1 cut(s) 1236
PdmI GAANNNNTTC 2 cut(s) 1305, 1898
PfeI GAWTC 8 cut(s) 140, 632, 847, 908, 1301, 1640, 2107, 2151
PkrI GCNGC 2 cut(s) 37, 1600
PleI GAGTC 8 cut(s) 21, 140, 292, 622, 718, 1405, 1520, 1767
PpsI GAGTC 8 cut(s) 21, 140, 292, 622, 718, 1405, 1520, 1767
Psp124BI GAGCTC 1 cut(s) 127
PspN4I GGNNCC 6 cut(s) 62, 217, 978, 1204, 1359, 1867
PspPI GGNCC 4 cut(s) 267, 404, 426, 1915
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 2073
PsuI RGATCY 1 cut(s) 976
RsaI GTAC 1 cut(s) 1620
RsaNI GTAC 1 cut(s) 1619
RseI CAYNNNNRTG 2 cut(s) 1385, 1752
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 6 cut(s) 528, 579, 627, 915, 1247, 1284
SatI GCNGC 2 cut(s) 36, 1599
Sau3AI GATC 4 cut(s) 976, 1563, 1665, 1786
Sau96I GGNCC 4 cut(s) 267, 404, 426, 1915
SchI GAGTC 8 cut(s) 21, 140, 293, 623, 719, 1406, 1520, 1767
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 2 cut(s) 1006, 1750
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 965
SinI GGWCC 2 cut(s) 404, 1915
SlaI CTCGAG 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 1385, 1752
SmlI CTYRAG 5 cut(s) 965, 1064, 1775, 1886, 2167
SmoI CTYRAG 5 cut(s) 965, 1064, 1775, 1886, 2167
SpeI ACTAGT 1 cut(s) 191
SsiI CCGC 2 cut(s) 278, 681
SspMI CTAG 5 cut(s) 87, 137, 192, 573, 1923
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 4 cut(s) 618, 929, 1353, 1846
TaaI ACNGT 4 cut(s) 167, 1623, 1741, 1983
TaqI TCGA 2 cut(s) 25, 966
TatI WGTACW 1 cut(s) 1618
TfiI GAWTC 8 cut(s) 140, 632, 847, 908, 1301, 1640, 2107, 2151
Tru1I TTAA 6 cut(s) 528, 579, 627, 915, 1247, 1284
Tru9I TTAA 6 cut(s) 528, 579, 627, 915, 1247, 1284
TscAI CASTG 6 cut(s) 709, 721, 964, 1045, 1666, 2161
TseFI GTSAC 1 cut(s) 1850
TseI GCWGC 2 cut(s) 35, 1598
Tsp45I GTSAC 1 cut(s) 1850
TspGWI ACGGA 3 cut(s) 799, 1538, 2132
TspRI CASTG 6 cut(s) 709, 721, 964, 1045, 1666, 2161
VpaK11BI GGWCC 2 cut(s) 404, 1915
XapI RAATTY 6 cut(s) 409, 436, 739, 1028, 1261, 1897
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 1863
XhoI CTCGAG 1 cut(s) 965
XmnI GAANNNNTTC 2 cut(s) 1305, 1898
XspI CTAG 5 cut(s) 87, 137, 192, 573, 1923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.