Rw4G020630

translocase of chloroplast 159

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
44642113 .. 44644276
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020630.1

Sequence Viewer

Length: 1767 bp
ATGGACTCGTCAAAGCCTTATGTTCGACTCTCTGCAGCACAAGACAACTCAGGAGCTTGGAACCCACAACAGAAGCTTGCAGTTTCTAGTTCATCTTCACTTTCAGGTTCTCTTCCTATCCGAGCTCGTCTTACTCTAGATTCTGATTCTGACTCTGAAATCAACGGTGGTCATGAATTGGGTTATATTACTAGTAGTAGTAACATTAGTGTTGGTTCCGAGAGTGGGTTTGTGAGTGGGGAAGAGTTTGAAACGGCGTCAGAGAGGCCCTTTGTGGCGGTGGAGTCGGATGAATATGAAGAAGCTGTTGTGGGTAAAGTTATGGTGGGTGGTCCGATTTCGGAGGAGGTTAGGCCCATTGCAAATTTGTCATGGGAGACTGATGGGAGTGATGCAGTGAGTGAGGAGACTGAAGAAGTGAGTGAAGATGAAGGTGGTGGATTGTTGGGTCATGTTAAGGCTCTGGTTTATGGGTTTGTGGAGCAGGTTGGTATTCCACCTAGAGTCAAGGTTTCTGAGGTTGAGGAAGGAGAAGAAGATGAGTCCTTGGTTGTTAAAGAATCAAGTTTTGTTGAAGGTGGAAATGGAGATTCTGTTCAAGTGGAATGCGGTGAGGATTGTAGTTTTGATACTGCTGAGTCCAGTGAAACGAAATCTGTTGAGTTGAATTTGAATGTATTGGAAGGTGTAGAGAAAGATAAGTATGTTGAAGAAGAGTTCTTTGTGCATGAAAGTTCCGTGAAATTGGATGAATTGGATGTTGAGGGTAACGAGAATCTGAGTATGGGAAATAGTCATATATCTGAAGCTGAGGAAGATAAAGTTGAATATAGTGATTCCTTTAACTCAATCACACCAAGGTCTGTCTTAGGTGAGAATGTGGCCACTGAACTCGAGATTGAGGATCCGATTGCTAATGGGAAGGACTTGGTTTTTACTGGAGATGCTGGTGTGAAATTTCAAGGCAGTGAAGCCAAAGTGGAAGTCCCTCTCAAGGAGAAGGGTTACACTATGGAACAGCACCCAACCAGCTTGGGTCTGTTTGTGGATAGTGTTGCACATGGGTTTCAGGTTTATGAGGTTGAAAAAAAAGTAGAAGAAGAACACAAGTTAGTGATGGGGAAAGGCTCCTCCGATTCCTTCATGAAGCAGTCTGAGCCGGCCACAGAATTAAAGGGTGTTCAGAATTCAGACTTGAAAGCCATTGTCAAAGGTCAAACTGGGGAATCCATTCAAGCTGAATGGACTGAAGATAATGGTCTTGGTGGTGTGGAAACCAAGGAACCAGATATTTTGGAGAAAGCCAAGAGCAGAAGATTCGCTGGAGTAACCGTAACTCACTTGGGTGAGGATGCCACCACAGGACTCAAGATTGAGGATCAGATTGCTATTGGGAAGGGCTTGGTGATGGCTGGAAGTGCTGGAGCTGTGCAATGCCAAGGTGATACAGCATGTGGAGCCAAACTGGAATTGTGCCTCAAGAAGAAGAATTTCCCTATAAAGCAGGACCAAACTAGCTTGGGTCTGTCTTTGATGAAGTGGGGTGGTGGTCTTCTTGTAACAACCGATATACTGTCTCGGTTCTCTGTTGGAAGTTCTAAAATAGCTGTTCATGTTGTATTGGACAACAAGCAGAGGGGAAAGATTGCTATAAGAACCAGCAACTCCGATAAAATCCCAAGCGCAGGGATTATTGGGATTCTCTCAATTGCAGTTTCAGTCTACGGGTTCTTCCGTTCAAGATTCGGTGTTCAGAACTCAAGATAA

Protein Analysis

588

Amino Acids

62.94

Weight (kDa)

4.52

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOC159_MAD PF11886 438 - 574 1.1e-35 Translocase of chloroplast 159/132, membrane anchor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 1722
AciI CCGC 2 cut(s) 278, 609
AclWI GGATC 3 cut(s) 899, 912, 1386
AcoI YGGCCR 2 cut(s) 882, 1161
AcsI RAATTY 5 cut(s) 364, 667, 956, 1186, 1489
AcuI CTGAAG 3 cut(s) 432, 825, 1269
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 225, 994, 1685
AhlI ACTAGT 1 cut(s) 191
AleI CACNNNNGTG 1 cut(s) 1344
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 3 cut(s) 371, 401, 1581
AlwI GGATC 3 cut(s) 899, 912, 1386
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 4 cut(s) 266, 353, 882, 1161
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 5 cut(s) 364, 667, 956, 1186, 1489
ArsI GACNNNNNNTTYG 2 cut(s) 969, 1001
Asp700I GAANNNNTTC 2 cut(s) 1230, 1490
AspLEI GCGC 1 cut(s) 1685
AspS9I GGNCC 4 cut(s) 267, 332, 354, 1507
AsuHPI GGTGA 5 cut(s) 623, 884, 1358, 1417, 1454
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 2 cut(s) 332, 1507
BalI TGGCCA 1 cut(s) 884
BamHI GGATCC 1 cut(s) 904
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 1544
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 1 cut(s) 47
BccI CCATC 3 cut(s) 377, 1111, 1402
BceAI ACGGC 1 cut(s) 270
BcgI CGANNNNNNTGC 2 cut(s) 1300, 1334
BcoDI GTCTC 3 cut(s) 371, 401, 1581
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 5 cut(s) 87, 137, 192, 501, 1515
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 2 cut(s) 332, 1507
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 4 cut(s) 267, 332, 354, 1507
BmiI GGNNCC 6 cut(s) 62, 217, 906, 1129, 1284, 1459
BmrI ACTGGG 1 cut(s) 1230
BmsI GCATC 3 cut(s) 382, 934, 1342
BmuI ACTGGG 1 cut(s) 1230
BpiI GAAGAC 1 cut(s) 1544
BpmI CTGGAG 3 cut(s) 960, 1344, 1443
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 4 cut(s) 977, 1352, 1463, 1744
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 546, 857, 1278, 1438
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 1317, 1347
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 994, 1685
Bse118I RCCGGY 1 cut(s) 1159
Bse1I ACTGG 4 cut(s) 642, 943, 1225, 1470
Bse3DI GCAATG 2 cut(s) 357, 1439
BseDI CCNNGG 4 cut(s) 546, 857, 1278, 1438
BseGI GGATG 4 cut(s) 295, 754, 763, 1357
BseLI CCNNNNNNNGG 3 cut(s) 225, 994, 1685
BseMI GCAATG 2 cut(s) 357, 1439
BseMII CTCAG 6 cut(s) 63, 507, 627, 770, 801, 1146
BseNI ACTGG 4 cut(s) 642, 943, 1225, 1470
BseRI GAGGAG 3 cut(s) 359, 419, 1120
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 4 cut(s) 268, 355, 884, 1163
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 893
BsiSI CCGG 1 cut(s) 1160
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 3 cut(s) 225, 994, 1685
BsmAI GTCTC 3 cut(s) 371, 401, 1581
BsmFI GGGAC 1 cut(s) 971
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 4 cut(s) 268, 355, 884, 1163
BsoBI CYCGRG 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 904, 1378
BspACI CCGC 2 cut(s) 278, 609
BspANI GGCC 4 cut(s) 268, 355, 884, 1163
BspCNI CTCAG 6 cut(s) 62, 508, 628, 771, 802, 1147
BspHI TCATGA 2 cut(s) 172, 1143
BspLI GGNNCC 6 cut(s) 62, 217, 906, 1129, 1284, 1459
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 3 cut(s) 899, 912, 1386
BsrDI GCAATG 2 cut(s) 357, 1439
BsrFI RCCGGY 1 cut(s) 1159
BsrI ACTGG 4 cut(s) 642, 943, 1225, 1470
BssAI RCCGGY 1 cut(s) 1159
BssECI CCNNGG 4 cut(s) 546, 857, 1278, 1438
BssMI GATC 2 cut(s) 904, 1378
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 4 cut(s) 546, 857, 1278, 1438
Bst4CI ACNGT 3 cut(s) 167, 1333, 1575
Bst6I CTCTTC 3 cut(s) 117, 237, 708
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 78, 1161
BstDEI CTNAG 7 cut(s) 49, 516, 636, 779, 810, 868, 1155
BstF5I GGATG 4 cut(s) 295, 754, 763, 1357
BstHHI GCGC 1 cut(s) 1685
BstKTI GATC 2 cut(s) 907, 1381
BstMAI GTCTC 3 cut(s) 371, 401, 1581
BstMBI GATC 2 cut(s) 904, 1378
BstMWI GCNNNNNNNGC 3 cut(s) 1156, 1418, 1457
BstNSI RCATGY 1 cut(s) 1455
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 1544
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 4 cut(s) 268, 355, 884, 1163
BtsCI GGATG 4 cut(s) 295, 754, 763, 1357
BtsI GCAGTG 2 cut(s) 402, 973
BtsIMutI CAGTG 4 cut(s) 402, 649, 885, 973
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 78, 1161
CciI TCATGA 2 cut(s) 172, 1143
CfoI GCGC 1 cut(s) 1685
Cfr10I RCCGGY 1 cut(s) 1159
Cfr13I GGNCC 4 cut(s) 267, 332, 354, 1507
CseI GACGC 1 cut(s) 246
CviAII CATG 8 cut(s) 173, 372, 452, 728, 1061, 1144, 1452, 1613
DdeI CTNAG 7 cut(s) 49, 516, 636, 779, 810, 868, 1155
DpnI GATC 2 cut(s) 906, 1380
DpnII GATC 2 cut(s) 904, 1378
EaeI YGGCCR 2 cut(s) 882, 1161
Eam1104I CTCTTC 3 cut(s) 117, 237, 708
EarI CTCTTC 3 cut(s) 117, 237, 708
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 4 cut(s) 546, 857, 1278, 1438
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 332, 1507
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 432, 825, 1269
Eco88I CYCGRG 1 cut(s) 893
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 1186
EcoT14I CCWWGG 4 cut(s) 546, 857, 1278, 1438
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 4 cut(s) 546, 857, 1278, 1438
FaeI CATG 8 cut(s) 176, 375, 455, 731, 1064, 1147, 1455, 1616
FaqI GGGAC 1 cut(s) 971
FatI CATG 8 cut(s) 172, 371, 451, 727, 1060, 1143, 1451, 1612
FblI GTMKAC 1 cut(s) 1722
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 302, 761, 770, 1364
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 5 cut(s) 87, 137, 192, 501, 1515
GlaI GCGC 1 cut(s) 1684
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 3 cut(s) 960, 1344, 1443
HaeIII GGCC 4 cut(s) 268, 355, 884, 1163
HapII CCGG 1 cut(s) 1160
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 1685
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 8 cut(s) 176, 375, 455, 731, 1064, 1147, 1455, 1616
Hin6I GCGC 1 cut(s) 1683
HinP1I GCGC 1 cut(s) 1683
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 1 cut(s) 1160
HphI GGTGA 5 cut(s) 623, 884, 1358, 1417, 1454
Hpy166II GTNNAC 1 cut(s) 1723
Hpy188III TCNNGA 9 cut(s) 51, 137, 173, 895, 1144, 1369, 1480, 1740, 1761
Hpy8I GTNNAC 1 cut(s) 1723
HpyAV CCTTC 8 cut(s) 425, 521, 569, 677, 916, 994, 1150, 1390
HpyCH4III ACNGT 3 cut(s) 167, 1333, 1575
HpyCH4V TGCA 8 cut(s) 35, 80, 362, 395, 727, 1058, 1432, 1712
HpyF10VI GCNNNNNNNGC 3 cut(s) 1156, 1418, 1457
HpyF3I CTNAG 7 cut(s) 49, 516, 636, 779, 810, 868, 1155
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 8 cut(s) 176, 375, 455, 731, 1064, 1147, 1455, 1616
HspAI GCGC 1 cut(s) 1683
KroI GCCGGC 1 cut(s) 1159
KroNI GCCGGC 1 cut(s) 1161
Kzo9I GATC 2 cut(s) 904, 1378
LmnI GCTCC 5 cut(s) 53, 481, 1133, 1424, 1457
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 3 cut(s) 382, 934, 1342
MaeI CTAG 5 cut(s) 87, 137, 192, 501, 1515
MaeIII GTNAC 6 cut(s) 200, 767, 1004, 1327, 1333, 1558
MalI GATC 2 cut(s) 906, 1380
MboI GATC 2 cut(s) 904, 1378
MfeI CAATTG 1 cut(s) 1707
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 884
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 7 cut(s) 21, 146, 293, 513, 551, 647, 1359
MmeI TCCRAC 2 cut(s) 267, 1570
Mox20I TGGCCA 1 cut(s) 884
MroNI GCCGGC 1 cut(s) 1159
MroXI GAANNNNTTC 2 cut(s) 1230, 1490
MscI TGGCCA 1 cut(s) 884
MseI TTAA 4 cut(s) 456, 555, 843, 1172
MslI CAYNNNNRTG 1 cut(s) 1344
Msp20I TGGCCA 1 cut(s) 884
MspI CCGG 1 cut(s) 1160
MunI CAATTG 1 cut(s) 1707
Mva1269I GAATGC 1 cut(s) 611
MwoI GCNNNNNNNGC 3 cut(s) 1156, 1418, 1457
NaeI GCCGGC 1 cut(s) 1161
NdeII GATC 2 cut(s) 904, 1378
NgoMIV GCCGGC 1 cut(s) 1159
NlaIII CATG 8 cut(s) 176, 375, 455, 731, 1064, 1147, 1455, 1616
NlaIV GGNNCC 6 cut(s) 62, 217, 906, 1129, 1284, 1459
NspI RCATGY 1 cut(s) 1455
OliI CACNNNNGTG 1 cut(s) 1344
PaeR7I CTCGAG 1 cut(s) 893
PagI TCATGA 2 cut(s) 172, 1143
PctI GAATGC 1 cut(s) 611
PdiI GCCGGC 1 cut(s) 1161
PdmI GAANNNNTTC 2 cut(s) 1230, 1490
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 7 cut(s) 21, 146, 292, 512, 550, 646, 1359
PpsI GAGTC 7 cut(s) 21, 146, 292, 512, 550, 646, 1359
Psp124BI GAGCTC 1 cut(s) 127
PspN4I GGNNCC 6 cut(s) 62, 217, 906, 1129, 1284, 1459
PspPI GGNCC 4 cut(s) 267, 332, 354, 1507
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 904
RseI CAYNNNNRTG 1 cut(s) 1344
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 4 cut(s) 456, 555, 843, 1172
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 904, 1378
Sau96I GGNCC 4 cut(s) 267, 332, 354, 1507
SchI GAGTC 7 cut(s) 21, 146, 293, 513, 551, 647, 1359
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 382, 934, 1342
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 893
SinI GGWCC 2 cut(s) 332, 1507
SlaI CTCGAG 1 cut(s) 893
SmiMI CAYNNNNRTG 1 cut(s) 1344
SmlI CTYRAG 5 cut(s) 893, 992, 1367, 1478, 1759
SmoI CTYRAG 5 cut(s) 893, 992, 1367, 1478, 1759
SpeI ACTAGT 1 cut(s) 191
SsiI CCGC 2 cut(s) 278, 609
SspMI CTAG 5 cut(s) 87, 137, 192, 501, 1515
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 4 cut(s) 546, 857, 1278, 1438
TaaI ACNGT 3 cut(s) 167, 1333, 1575
TaqI TCGA 2 cut(s) 25, 894
Tru1I TTAA 4 cut(s) 456, 555, 843, 1172
Tru9I TTAA 4 cut(s) 456, 555, 843, 1172
TscAI CASTG 4 cut(s) 402, 649, 892, 973
TseI GCWGC 1 cut(s) 35
TspGWI ACGGA 2 cut(s) 727, 1724
TspRI CASTG 4 cut(s) 402, 649, 892, 973
VpaK11BI GGWCC 2 cut(s) 332, 1507
XapI RAATTY 5 cut(s) 364, 667, 956, 1186, 1489
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 1455
XhoI CTCGAG 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 1722
XmnI GAANNNNTTC 2 cut(s) 1230, 1490
XspI CTAG 5 cut(s) 87, 137, 192, 501, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.