Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015598

Physical Location & Seq

Genomic Coordinates Reverse (-)

44482381 .. 44483382

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG237200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACTCGTCAAGGGCTTATGTTCGACTCTCTGCAGCACAAGACAACTCAGGAGCTTGGAACCCACAACAGAAGCTTGCAGTTTCTAGTTCATCTTCACTTTCAGGTTCTCTTCCTATCCGAGCTCGTCTTACTCTAGATTCTGATTCTGACTCTGAAATCAACGGTGGTCGTGAATTGGGTTATATTACTAGTAGTAGTAACATTAGTGTTGGTTCCGAGAGTGGGTTTGTGAGTGGGGAAGAGTTTGAAACGGCGTCAGAGAGGCCCTTTGTGGCGGTGGAGTCGGGTGAGGAAGCCCTTGAAGAGTGTGGCTCTGTTGAAAAATATGAGGTTTTTTGGCCGTCTGTGTCTGACCCAGATGAATATGAAGAAGCTGTTGTGGGTAAAGTTATGGTGGGTGGTCCGATTTCGGAGGAGGTTAGGCCCATTGCAAATTTGTCATGGGAGACTGATGGGAGTGATGCAGTGAGTGAGGAGACTGAAGAAGTGAGTGAAGATGAAGGTGGTGGATTGTTGGGTCATGTTAAGGCTCTGGTTTATGGGCTTGTGGAGCAGGTTGGTATTCCACCTAGAGTCAAGGTTTCTGAGGTTGAGGAAGGAGAAGAAGATGAGTCCTTGGTTATTAAAGAATCAAGTTTTGTTGAAGGTGGAAATGGAGATTCTGTTCAAGTGGAATGCCGTGAGGATTGTAGTTTTGATACTGCTGAGTCCAGTGAAACGAAATCTGTTGAGTTGAATATGAATGTATTGGAAGGTGGAGAGAAAGATAAGTACGTTGAAGAAGAGTTCTTTGTGCATGAAAGTTCCGTGAAATTGGATGAATTGGATGTTGAGGGTAACGAGAATCTGAGTATGGGAAATAGTCATATATCTGAAGCTGAGGAAGATAAAGTTGAATATAGTGATTCCTTTAACTCAATCACACCAAGGTCTGTCTTAGGTGAGAATGTGGCCACTGAACTCGAGATTGAGGATCCGATTGCTAATGGGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

333

Amino Acids

35.87

Weight (kDa)

4.05

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18070
malus_domestica	MD16G1168600.v1.1
prunus_persica	Prupe.1G136400_v2.0.a1
pyrus_communis	pycom16g14200
rosa_chinensis	RchiOBHm_Chr4g0422301
rosa_laevigata	RLG00000007622
rosa_multiflora	Rmu_sc0013245.1_g000017 Rmu_sc0019605.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364390
rosa_rugosa	Rorug04G0179100
rosa_samantha	Rh4AG238400 Rh4BG241500 Rh4CG253400 Rh4DG237100 Rh4DG237200
rosa_wichuraiana	Rw4G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	2 cut(s)	971, 984
AcoI	YGGCCR	2 cut(s)	341, 954
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	504, 897
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	8 cut(s)	251, 305, 323, 647, 671, 739, 782, 899
AhlI	ACTAGT	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
AluBI	AGCT	5 cut(s)	56, 76, 125, 377, 881
AluI	AGCT	5 cut(s)	56, 76, 125, 377, 881
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	443, 473
AlwI	GGATC	2 cut(s)	971, 984
Ama87I	CYCGRG	1 cut(s)	965
AoxI	GGCC	4 cut(s)	266, 341, 425, 954
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	267, 404, 426
AsuHPI	GGTGA	2 cut(s)	302, 956
AvaI	CYCGRG	1 cut(s)	965
AvaII	GGWCC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	956
BamHI	GGATCC	1 cut(s)	976
BanII	GRGCYC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	3 cut(s)	270, 328, 666
BcoDI	GTCTC	2 cut(s)	443, 473
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	5 cut(s)	87, 137, 192, 573, 1000
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	965
BmgT120I	GGNCC	3 cut(s)	267, 404, 426
BmiI	GGNNCC	3 cut(s)	62, 217, 978
BmsI	GCATC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu10I	CCTNAGC	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	618, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	618, 929
BseGI	GGATG	2 cut(s)	826, 835
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	5 cut(s)	63, 579, 699, 842, 873
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	2 cut(s)	431, 491
BseXI	GCAGC	1 cut(s)	47
BshFI	GGCC	4 cut(s)	268, 343, 427, 956
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	965
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	443, 473
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	4 cut(s)	268, 343, 427, 956
BsoBI	CYCGRG	1 cut(s)	965
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	976
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	4 cut(s)	268, 343, 427, 956
BspCNI	CTCAG	5 cut(s)	62, 580, 700, 843, 874
BspLI	GGNNCC	3 cut(s)	62, 217, 978
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	971, 984
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	618, 929
BssMI	GATC	1 cut(s)	976
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	618, 929
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	4 cut(s)	117, 237, 300, 780
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	6 cut(s)	49, 588, 708, 851, 882, 940
BstF5I	GGATG	2 cut(s)	826, 835
BstKTI	GATC	1 cut(s)	979
BstMAI	GTCTC	2 cut(s)	443, 473
BstMBI	GATC	1 cut(s)	976
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	976
BstYI	RGATCY	1 cut(s)	976
BsuRI	GGCC	4 cut(s)	268, 343, 427, 956
BtsCI	GGATG	2 cut(s)	826, 835
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	474, 721, 957
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	267, 404, 426
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	3 cut(s)	444, 524, 800
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	6 cut(s)	49, 588, 708, 851, 882, 940
DpnI	GATC	1 cut(s)	978
DpnII	GATC	1 cut(s)	976
EaeI	YGGCCR	2 cut(s)	341, 954
Eam1104I	CTCTTC	4 cut(s)	117, 237, 300, 780
EarI	CTCTTC	4 cut(s)	117, 237, 300, 780
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	618, 929
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	504, 897
Eco88I	CYCGRG	1 cut(s)	965
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	618, 929
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	618, 929
FaeI	CATG	3 cut(s)	447, 527, 803
FatI	CATG	3 cut(s)	443, 523, 799
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	2 cut(s)	833, 842
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	5 cut(s)	87, 137, 192, 573, 1000
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	268, 343, 427, 956
HgaI	GACGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	447, 527, 803
HindIII	AAGCTT	1 cut(s)	74
HphI	GGTGA	2 cut(s)	302, 956
Hpy188III	TCNNGA	4 cut(s)	51, 137, 173, 967
HpyAV	CCTTC	5 cut(s)	497, 593, 641, 749, 988
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	5 cut(s)	35, 80, 434, 467, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	6 cut(s)	49, 588, 708, 851, 882, 940
HpySE526I	ACGT	1 cut(s)	777
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	447, 527, 803
Kzo9I	GATC	1 cut(s)	976
LmnI	GCTCC	2 cut(s)	53, 553
LpnPI	CCDG	6 cut(s)	36, 90, 372, 521, 542, 727
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	5 cut(s)	87, 137, 192, 573, 1000
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	2 cut(s)	200, 839
MalI	GATC	1 cut(s)	978
MboI	GATC	1 cut(s)	976
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	956
MluCI	AATT	4 cut(s)	176, 436, 815, 824
MluNI	TGGCCA	1 cut(s)	956
MlyI	GAGTC	6 cut(s)	21, 146, 293, 585, 623, 719
Mox20I	TGGCCA	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	3 cut(s)	528, 627, 915
Msp20I	TGGCCA	1 cut(s)	956
Mva1269I	GAATGC	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	1 cut(s)	976
NlaIII	CATG	3 cut(s)	447, 527, 803
NlaIV	GGNNCC	3 cut(s)	62, 217, 978
PaeR7I	CTCGAG	1 cut(s)	965
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	6 cut(s)	140, 146, 632, 662, 847, 908
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	6 cut(s)	21, 146, 292, 584, 622, 718
PpsI	GAGTC	6 cut(s)	21, 146, 292, 584, 622, 718
Psp124BI	GAGCTC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	62, 217, 978
PspPI	GGNCC	3 cut(s)	267, 404, 426
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	976
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	528, 627, 915
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	976
Sau96I	GGNCC	3 cut(s)	267, 404, 426
SchI	GAGTC	6 cut(s)	21, 146, 293, 585, 623, 719
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	965
SinI	GGWCC	1 cut(s)	404
SlaI	CTCGAG	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	4 cut(s)	176, 436, 815, 824
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	5 cut(s)	87, 137, 192, 573, 1000
SstI	GAGCTC	1 cut(s)	127
StyI	CCWWGG	2 cut(s)	618, 929
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	2 cut(s)	25, 966
TasI	AATT	4 cut(s)	176, 436, 815, 824
TfiI	GAWTC	6 cut(s)	140, 146, 632, 662, 847, 908
Tru1I	TTAA	3 cut(s)	528, 627, 915
Tru9I	TTAA	3 cut(s)	528, 627, 915
TscAI	CASTG	3 cut(s)	474, 721, 964
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	7 cut(s)	81, 378, 384, 516, 758, 816, 837
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	3 cut(s)	474, 721, 964
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	436
XbaI	TCTAGA	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	965
XspI	CTAG	5 cut(s)	87, 137, 192, 573, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.