Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015598

Physical Location & Seq

Genomic Coordinates Reverse (-)

44481211 .. 44482299

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAACAGTACCCAACCAGCTTGGGTCTGTTTGTGGATAGTGTTGCACATGGGTTTCAGGTTTATGAGGTTGAAAAAAAAGTAGAAGAAGAACACAAGTTAGTGATGGGGAAAGGCTCCTCCAATTCCTTCATGAAGCAGTCTGAGCCGGCCACAGAATTAAAGGGTGTTCAGAATTCAGACTTGAAAGCCATTGTTAAAGGTCAAACTGGGGAATCCATTCAAGCTGAATGGACTGAAGATAATGGTCTTGGTGGTGTGGAAACCAAGGAACCAGATATTTTGGAGAAAGCCAAGAGTATGGCAGCAGAGTCTATAATGCCTTCCCCAAAAAGCAAAACGAGTGATGTTGATATTAGCGAAAGTTTTGGGGCATTGGATAGAGGAGTCCATTCAGAATGTAATTTTGATGTTGAGGGGAGTGGAAATCAGATAACGGACTCCAATTCATATTCACAGCCAAATCCAATTCTGAAGATCGTATATGTGAGTAAGCGCAATTTGTCTGAAGCTGCTGGGGGTGATGGATATGTACTGTGTTCTGATTTCCTTGAATCAATCACACCAAGTTCCAGTGTGACCCATGAACACATTTTTGGTGGTGAAACCAAGGTAAAAAATTGTAAAATAGGCAGAAGATTTGCTGGAGTAACCGTAACTCACTTGGGTGAGGATGCCACCACCGGACTCAAGATTGAGGATCAGATTGCTATTGGGAAGGGCTTGGTGATGGCTGGAAGTGCTGGAGCTGTGCAATGCCAAGGTGATATAGCATGTGGAGCCAAACTGGAATTGTGCCTCGAGAAGAAGAATTTCCCTATAAAGCAGGACCAAACTAGCTTGGGTCTGTCTTTGATGAAGTGGGGTGGTGGTCTTCTTGTAACAACCGATATACTGTCTCGGTTCTCTGTTGGAAGTTCTAAAATAGCTGTTCATGTTTTATTGGACAACAAGCAGAGGGGAAAGATTGCTATAAGAACCAGCAACTCCGATAAAATCCCAAGCGCAGGGATTATTGGGATTCTCTCAATTGCAGTTTCAGTCTTCGGGTTCTTCCGTTCAAGATTTGGTGTTCAGAACTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

362

Amino Acids

38.69

Weight (kDa)

5.88

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOC159_MAD	PF11886	198 - 348	9.6e-39	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18070
malus_domestica	MD16G1168600.v1.1
prunus_persica	Prupe.1G136400_v2.0.a1
pyrus_communis	pycom16g14200
rosa_chinensis	RchiOBHm_Chr4g0422301
rosa_laevigata	RLG00000007622
rosa_multiflora	Rmu_sc0013245.1_g000017 Rmu_sc0019605.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364390
rosa_rugosa	Rorug04G0179100
rosa_samantha	Rh4AG238400 Rh4BG241500 Rh4CG253400 Rh4DG237100 Rh4DG237200
rosa_wichuraiana	Rw4G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	708
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	175, 811
AcuI	CTGAAG	3 cut(s)	258, 494, 528
AfaI	GTAC	2 cut(s)	11, 534
AfiI	CCNNNNNNNGG	1 cut(s)	1007
AgsI	TTSAA	5 cut(s)	74, 187, 224, 554, 1062
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AleI	CACNNNNGTG	1 cut(s)	666
AluBI	AGCT	6 cut(s)	21, 227, 512, 749, 840, 929
AluI	AGCT	6 cut(s)	21, 227, 512, 749, 840, 929
Alw26I	GTCTC	1 cut(s)	903
AlwI	GGATC	1 cut(s)	708
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	305, 512
ApoI	RAATTY	2 cut(s)	175, 811
Asp700I	GAANNNNTTC	2 cut(s)	219, 812
AspLEI	GCGC	2 cut(s)	498, 1007
AspS9I	GGNCC	1 cut(s)	829
AsuHPI	GGTGA	5 cut(s)	533, 614, 680, 739, 776
AvaI	CYCGRG	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	829
BbsI	GAAGAC	2 cut(s)	866, 1036
BbvI	GCAGC	2 cut(s)	317, 499
BccI	CCATC	3 cut(s)	100, 518, 724
BcoDI	GTCTC	1 cut(s)	903
BfaI	CTAG	1 cut(s)	837
BisI	GCNGC	2 cut(s)	306, 513
BlsI	GCNGC	2 cut(s)	307, 514
Bme18I	GGWCC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	829
BmiI	GGNNCC	3 cut(s)	118, 273, 781
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	866, 1036
BpmI	CTGGAG	2 cut(s)	666, 765
BpuEI	CTTGAG	2 cut(s)	674, 1066
BsaJI	CCNNGG	3 cut(s)	267, 609, 760
BsaWI	WCCGGW	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	1007
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	214, 573, 792
Bse3DI	GCAATG	1 cut(s)	761
BseDI	CCNNGG	3 cut(s)	267, 609, 760
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	1007
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	214, 573, 792
BseRI	GAGGAG	2 cut(s)	109, 399
BseXI	GCAGC	2 cut(s)	317, 499
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	149, 684
BslI	CCNNNNNNNGG	1 cut(s)	1007
BsmAI	GTCTC	1 cut(s)	903
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	800
Bsp143I	GATC	2 cut(s)	477, 700
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	118, 273, 781
BspPI	GGATC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	214, 573, 792
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	267, 609, 760
BssMI	GATC	2 cut(s)	477, 700
BssT1I	CCWWGG	3 cut(s)	267, 609, 760
Bst4CI	ACNGT	4 cut(s)	9, 537, 655, 897
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	498, 1007
BstKTI	GATC	2 cut(s)	480, 703
BstMAI	GTCTC	1 cut(s)	903
BstMBI	GATC	2 cut(s)	477, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 740, 779
BstNSI	RCATGY	1 cut(s)	777
BstV1I	GCAGC	2 cut(s)	317, 499
BstV2I	GAAGAC	2 cut(s)	866, 1036
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	498, 1007
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	10, 533
CviAII	CATG	5 cut(s)	50, 133, 584, 774, 935
CviQI	GTAC	2 cut(s)	10, 533
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	479, 702
DpnII	GATC	2 cut(s)	477, 700
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	3 cut(s)	267, 609, 760
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	3 cut(s)	258, 494, 528
Eco88I	CYCGRG	1 cut(s)	800
EcoRI	GAATTC	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	267, 609, 760
ErhI	CCWWGG	3 cut(s)	267, 609, 760
FaeI	CATG	5 cut(s)	53, 136, 587, 777, 938
FatI	CATG	5 cut(s)	49, 132, 583, 773, 934
Fnu4HI	GCNGC	2 cut(s)	306, 513
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	306, 513
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	2 cut(s)	497, 1006
GluI	GCNGC	2 cut(s)	306, 513
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	666, 765
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	149, 684
HhaI	GCGC	2 cut(s)	498, 1007
Hin1II	CATG	5 cut(s)	53, 136, 587, 777, 938
Hin6I	GCGC	2 cut(s)	496, 1005
HinP1I	GCGC	2 cut(s)	496, 1005
HinfI	GANTC	7 cut(s)	215, 311, 387, 440, 554, 687, 1021
HpaII	CCGG	2 cut(s)	149, 684
HphI	GGTGA	5 cut(s)	533, 614, 680, 739, 776
Hpy188III	TCNNGA	5 cut(s)	133, 691, 802, 1062, 1083
HpyAV	CCTTC	3 cut(s)	139, 333, 712
HpyCH4III	ACNGT	4 cut(s)	9, 537, 655, 897
HpyCH4V	TGCA	3 cut(s)	47, 754, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 740, 779
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	53, 136, 587, 777, 938
HspAI	GCGC	2 cut(s)	496, 1005
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	477, 700
LmnI	GCTCC	3 cut(s)	122, 746, 779
Lsp1109I	GCAGC	2 cut(s)	317, 499
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	837
MaeIII	GTNAC	4 cut(s)	577, 649, 655, 880
MalI	GATC	2 cut(s)	479, 702
MboI	GATC	2 cut(s)	477, 700
MfeI	CAATTG	1 cut(s)	1029
MlyI	GAGTC	4 cut(s)	320, 396, 434, 681
MmeI	TCCRAC	1 cut(s)	892
MnlI	CCTC	8 cut(s)	61, 130, 377, 409, 664, 691, 809, 951
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	2 cut(s)	219, 812
MseI	TTAA	2 cut(s)	161, 198
MslI	CAYNNNNRTG	1 cut(s)	666
MspI	CCGG	2 cut(s)	149, 684
MunI	CAATTG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	3 cut(s)	145, 740, 779
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	477, 700
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	53, 136, 587, 777, 938
NlaIV	GGNNCC	3 cut(s)	118, 273, 781
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	777
OliI	CACNNNNGTG	1 cut(s)	666
PaeR7I	CTCGAG	1 cut(s)	800
PagI	TCATGA	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	219, 812
PfeI	GAWTC	3 cut(s)	215, 554, 1021
PkrI	GCNGC	2 cut(s)	307, 514
PleI	GAGTC	4 cut(s)	319, 395, 434, 681
PpsI	GAGTC	4 cut(s)	319, 395, 434, 681
PspFI	CCCAGC	1 cut(s)	515
PspN4I	GGNNCC	3 cut(s)	118, 273, 781
PspPI	GGNCC	1 cut(s)	829
RsaI	GTAC	2 cut(s)	11, 534
RsaNI	GTAC	2 cut(s)	10, 533
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	161, 198
SatI	GCNGC	2 cut(s)	306, 513
Sau3AI	GATC	2 cut(s)	477, 700
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	4 cut(s)	320, 396, 434, 681
SfaNI	GCATC	1 cut(s)	664
Sfr274I	CTCGAG	1 cut(s)	800
SinI	GGWCC	1 cut(s)	829
SlaI	CTCGAG	1 cut(s)	800
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	3 cut(s)	689, 800, 1081
SmoI	CTYRAG	3 cut(s)	689, 800, 1081
SspMI	CTAG	1 cut(s)	837
StyI	CCWWGG	3 cut(s)	267, 609, 760
TaaI	ACNGT	4 cut(s)	9, 537, 655, 897
TaqI	TCGA	1 cut(s)	801
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	3 cut(s)	215, 554, 1021
Tru1I	TTAA	2 cut(s)	161, 198
Tru9I	TTAA	2 cut(s)	161, 198
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	2 cut(s)	305, 512
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	6 cut(s)	121, 149, 438, 600, 872, 923
TspGWI	ACGGA	2 cut(s)	452, 1046
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	829
XapI	RAATTY	2 cut(s)	175, 811
XceI	RCATGY	1 cut(s)	777
XhoI	CTCGAG	1 cut(s)	800
XmnI	GAANNNNTTC	2 cut(s)	219, 812
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.