Rmu_sc0013245.1_g000017

translocase of chloroplast 159

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013245.1
Physical Location & Seq
Forward (+)
62570 .. 64726
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013245.1_g000017.1.cds

Sequence Viewer

Length: 2157 bp
atggactcgtcaaaggcttatgttcgactctctgcagcacaagacaactcaggagcttggaacccacaacagaagcttgcagtttctagttcatcttcactttcaggttctcttcctatccgagctcgtcttactctagattctgactctgactctgaaatcaacggtgctcatgaattgggttatattactagtagtagtaacattagtgttggttccgagagtgggtttgtgagtggggaagagtttgaaacggcgtcagagaggccctttgtggcggtggagtcgggtgaggaagcccttgaagagagtggctctgttgaaaaatatgaggttttttggccttctgtgtctgacccagatgaatataaagaagctgttgtgggtaaagttatggtgggtggtccgatttcggaggttaggcccattgcaaatttgtcatgggagagtgatgggagtgatgcagtgagtgaggagactgaagaagtgagtgaagatgaaggtggtggattgttgggtcatgttaaggctctggtttatgggtttgtagagcaggttggtattccacctagagtcaaggtttctgaggttgaggaaggagaagaagatgagtccttggttgttaaagaatcaagttttgttgaaggtggaaatggagattctgttcaagtggaatgcggtgaggattgtagttttgatactgctgagtccagtgaaacaaaatctgttgagttgaatttgaatgtattggaaggtgtagagaaagataagtatgttgaagaagagttctttgtgcatgaaagttccgtgaaattggatgaattggatgttgagggtaacgagaatctgagtatgggaaatagtcatatatctgaagctgaggaagataaggttgaatatagtgattcctttaactcaatcacaccaaggtctgtcttaggtgagaatgtggccactgaactcgagattgaggatccgattgctaatgggaaggacttggtttttactggagatgctggtgtgaaatttcaaggcagtgaagccaaagtggaagtccctctcaaggagaagggttacactatggaacagcacccaaccagcttgggtctgtttgtggatagtgttgcacatgggtttcaggtttatgaggttgaaaaaaaagtagaagaagaacacaagttagtgatggggaaaggctcctccgattccttcatgaagcagtctgagccggccacagaattaaagggtgttcagaattcagacttgaaagccattgtcaaaggtcaaactggggaatccattcaagctgaatggactgaagataatggtcttggtggtgtggaaaccaaggaaccagatattttggagaaagccaagagtatggcagaagagtctataatgccttccccaaaaagcaaaacgagtgatgttgatattagcgaaagttttggggcattggatagaggagtccattcagaatgtgattttgatgttgaggggagtggaaatcagataacggactccaattcatattcacagccaaatccaattctgaagatcgtatatgtgagtaagcgcaatttgtctgaagctgctgggggtgatggatatgtactgtgttctgatttccttgaatcaatcacaccaagttccagtgtgacccatgaacacatttttggtggtgaaaccaaggtaaaaaattgtaaaataggcagaagattcgctggagtaaccgtaactcacttgggtgaggatgccaccaccggactcaagattgaggatcagattgctattgggaagggcttggtgatggctggaagtgctggagctgtgcaatgccaaggtgatacagcatgtggagccaaactggaattgtgcctcaagaagaagaatttccctataaagcaggaccaaactagcttgggtctgtctttgatgaagtggggtggtggtcttcttgtaacaaccgatatactgtctcggttctctgttggaagttctaaaatagctgttcatgttgtattggacaacaagcagaggggaaagattgctataagaaccagcaactccgataaaatcccaagcgcagggattattgggattctctcaattgcagtttcagtctacgggttcttccgttcaagattcggtgtgtag

Protein Analysis

718

Amino Acids

76.81

Weight (kDa)

4.5

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccI GTMKAC 1 cut(s) 2124
AciI CCGC 2 cut(s) 278, 678
AclWI GGATC 3 cut(s) 968, 981, 1788
AcoI YGGCCR 2 cut(s) 951, 1230
AcsI RAATTY 5 cut(s) 433, 736, 1025, 1255, 1891
AcuI CTGAAG 5 cut(s) 501, 894, 1338, 1574, 1608
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 1614
AfiI CCNNNNNNNGG 3 cut(s) 225, 1063, 2087
AhlI ACTAGT 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 1659, 1691
AleI CACNNNNGTG 1 cut(s) 1746
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
Alw21I GWGCWC 2 cut(s) 127, 172
Alw26I GTCTC 2 cut(s) 470, 1983
AlwI GGATC 3 cut(s) 968, 981, 1788
Ama87I CYCGRG 1 cut(s) 962
AoxI GGCC 5 cut(s) 266, 341, 422, 951, 1230
ApeKI GCWGC 2 cut(s) 35, 1592
ApoI RAATTY 5 cut(s) 433, 736, 1025, 1255, 1891
ArsI GACNNNNNNTTYG 2 cut(s) 1038, 1070
Asp700I GAANNNNTTC 2 cut(s) 1299, 1892
AspLEI GCGC 2 cut(s) 1578, 2087
AspS9I GGNCC 4 cut(s) 267, 404, 423, 1909
AsuHPI GGTGA 8 cut(s) 302, 692, 953, 1613, 1694, 1760, 1819, 1856
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 2 cut(s) 404, 1909
BalI TGGCCA 1 cut(s) 953
BamHI GGATCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 1946
Bbv12I GWGCWC 2 cut(s) 127, 172
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 2 cut(s) 47, 1579
BccI CCATC 4 cut(s) 446, 1180, 1598, 1804
BceAI ACGGC 1 cut(s) 270
BcgI CGANNNNNNTGC 2 cut(s) 1702, 1736
BcoDI GTCTC 2 cut(s) 470, 1983
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 5 cut(s) 87, 137, 192, 570, 1917
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 2 cut(s) 36, 1593
BlsI GCNGC 2 cut(s) 37, 1594
Bme18I GGWCC 2 cut(s) 404, 1909
BmeT110I CYCGRG 1 cut(s) 962
BmgT120I GGNCC 4 cut(s) 267, 404, 423, 1909
BmiI GGNNCC 6 cut(s) 62, 217, 975, 1198, 1353, 1861
BmrI ACTGGG 1 cut(s) 1299
BmsI GCATC 3 cut(s) 451, 1003, 1744
BmuI ACTGGG 1 cut(s) 1299
BpiI GAAGAC 1 cut(s) 1946
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 3 cut(s) 1029, 1746, 1845
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 3 cut(s) 1046, 1754, 1865
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 615, 926, 1347, 1689, 1840
BsaWI WCCGGW 1 cut(s) 1763
BsaXI ACNNNNNCTCC 4 cut(s) 648, 678, 1719, 1749
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 1063, 2087
Bse118I RCCGGY 1 cut(s) 1228
Bse1I ACTGG 5 cut(s) 711, 1012, 1294, 1653, 1872
Bse3DI GCAATG 2 cut(s) 426, 1841
BseDI CCNNGG 5 cut(s) 615, 926, 1347, 1689, 1840
BseGI GGATG 3 cut(s) 823, 832, 1759
BseLI CCNNNNNNNGG 3 cut(s) 225, 1063, 2087
BseMI GCAATG 2 cut(s) 426, 1841
BseMII CTCAG 6 cut(s) 63, 576, 696, 839, 870, 1215
BseNI ACTGG 5 cut(s) 711, 1012, 1294, 1653, 1872
BseRI GAGGAG 3 cut(s) 488, 1189, 1479
BseXI GCAGC 2 cut(s) 47, 1579
BseYI CCCAGC 1 cut(s) 1595
BshFI GGCC 5 cut(s) 268, 343, 424, 953, 1232
BsiHKAI GWGCWC 2 cut(s) 127, 172
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 2 cut(s) 1229, 1764
BslFI GGGAC 1 cut(s) 1040
BslI CCNNNNNNNGG 3 cut(s) 225, 1063, 2087
BsmAI GTCTC 2 cut(s) 470, 1983
BsmFI GGGAC 1 cut(s) 1040
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 5 cut(s) 268, 343, 424, 953, 1232
BsoBI CYCGRG 1 cut(s) 962
Bsp1286I GDGCHC 2 cut(s) 127, 172
Bsp143I GATC 3 cut(s) 973, 1557, 1780
BspACI CCGC 2 cut(s) 278, 678
BspANI GGCC 5 cut(s) 268, 343, 424, 953, 1232
BspCNI CTCAG 6 cut(s) 62, 577, 697, 840, 871, 1216
BspHI TCATGA 2 cut(s) 172, 1212
BspLI GGNNCC 6 cut(s) 62, 217, 975, 1198, 1353, 1861
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 3 cut(s) 968, 981, 1788
BsrDI GCAATG 2 cut(s) 426, 1841
BsrFI RCCGGY 1 cut(s) 1228
BsrI ACTGG 5 cut(s) 711, 1012, 1294, 1653, 1872
BssAI RCCGGY 1 cut(s) 1228
BssECI CCNNGG 5 cut(s) 615, 926, 1347, 1689, 1840
BssMI GATC 3 cut(s) 973, 1557, 1780
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 5 cut(s) 615, 926, 1347, 1689, 1840
Bst4CI ACNGT 4 cut(s) 167, 1617, 1735, 1977
Bst6I CTCTTC 5 cut(s) 117, 237, 300, 777, 1383
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 78, 1230
BstDEI CTNAG 7 cut(s) 49, 585, 705, 848, 879, 937, 1224
BstF5I GGATG 3 cut(s) 823, 832, 1759
BstHHI GCGC 2 cut(s) 1578, 2087
BstKTI GATC 3 cut(s) 976, 1560, 1783
BstMAI GTCTC 2 cut(s) 470, 1983
BstMBI GATC 3 cut(s) 973, 1557, 1780
BstMWI GCNNNNNNNGC 3 cut(s) 1225, 1820, 1859
BstNSI RCATGY 1 cut(s) 1857
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 47, 1579
BstV2I GAAGAC 1 cut(s) 1946
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 1381
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 5 cut(s) 268, 343, 424, 953, 1232
BtsCI GGATG 3 cut(s) 823, 832, 1759
BtsI GCAGTG 2 cut(s) 471, 1042
BtsIMutI CAGTG 5 cut(s) 471, 718, 954, 1042, 1660
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 78, 1230
CciI TCATGA 2 cut(s) 172, 1212
CfoI GCGC 2 cut(s) 1578, 2087
Cfr10I RCCGGY 1 cut(s) 1228
Cfr13I GGNCC 4 cut(s) 267, 404, 423, 1909
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 1613
CviAII CATG 9 cut(s) 173, 441, 521, 797, 1130, 1213, 1664, 1854, 2015
CviQI GTAC 1 cut(s) 1613
DdeI CTNAG 7 cut(s) 49, 585, 705, 848, 879, 937, 1224
DpnI GATC 3 cut(s) 975, 1559, 1782
DpnII GATC 3 cut(s) 973, 1557, 1780
EaeI YGGCCR 2 cut(s) 951, 1230
Eam1104I CTCTTC 5 cut(s) 117, 237, 300, 777, 1383
EarI CTCTTC 5 cut(s) 117, 237, 300, 777, 1383
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 5 cut(s) 615, 926, 1347, 1689, 1840
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 404, 1909
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 5 cut(s) 501, 894, 1338, 1574, 1608
Eco88I CYCGRG 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 1255
EcoT14I CCWWGG 5 cut(s) 615, 926, 1347, 1689, 1840
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 5 cut(s) 615, 926, 1347, 1689, 1840
FaeI CATG 9 cut(s) 176, 444, 524, 800, 1133, 1216, 1667, 1857, 2018
FaqI GGGAC 1 cut(s) 1040
FatI CATG 9 cut(s) 172, 440, 520, 796, 1129, 1212, 1663, 1853, 2014
FblI GTMKAC 1 cut(s) 2124
Fnu4HI GCNGC 2 cut(s) 36, 1593
FokI GGATG 3 cut(s) 830, 839, 1766
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 36, 1593
FspBI CTAG 5 cut(s) 87, 137, 192, 570, 1917
GlaI GCGC 2 cut(s) 1577, 2086
GluI GCNGC 2 cut(s) 36, 1593
GsaI CCCAGC 1 cut(s) 1599
GsuI CTGGAG 3 cut(s) 1029, 1746, 1845
HaeIII GGCC 5 cut(s) 268, 343, 424, 953, 1232
HapII CCGG 2 cut(s) 1229, 1764
HgaI GACGC 1 cut(s) 246
HhaI GCGC 2 cut(s) 1578, 2087
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 9 cut(s) 176, 444, 524, 800, 1133, 1216, 1667, 1857, 2018
Hin6I GCGC 2 cut(s) 1576, 2085
HinP1I GCGC 2 cut(s) 1576, 2085
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 2 cut(s) 1229, 1764
HphI GGTGA 8 cut(s) 302, 692, 953, 1613, 1694, 1760, 1819, 1856
Hpy166II GTNNAC 1 cut(s) 2125
Hpy188III TCNNGA 8 cut(s) 51, 137, 173, 964, 1213, 1771, 1882, 2142
Hpy8I GTNNAC 1 cut(s) 2125
HpyCH4III ACNGT 4 cut(s) 167, 1617, 1735, 1977
HpyCH4V TGCA 8 cut(s) 35, 80, 431, 464, 796, 1127, 1834, 2114
HpyF10VI GCNNNNNNNGC 3 cut(s) 1225, 1820, 1859
HpyF3I CTNAG 7 cut(s) 49, 585, 705, 848, 879, 937, 1224
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 9 cut(s) 176, 444, 524, 800, 1133, 1216, 1667, 1857, 2018
HspAI GCGC 2 cut(s) 1576, 2085
KroI GCCGGC 1 cut(s) 1228
KroNI GCCGGC 1 cut(s) 1230
Kzo9I GATC 3 cut(s) 973, 1557, 1780
LmnI GCTCC 4 cut(s) 53, 1202, 1826, 1859
Lsp1109I GCAGC 2 cut(s) 47, 1579
LweI GCATC 3 cut(s) 451, 1003, 1744
MaeI CTAG 5 cut(s) 87, 137, 192, 570, 1917
MaeIII GTNAC 7 cut(s) 200, 836, 1073, 1657, 1729, 1735, 1960
MalI GATC 3 cut(s) 975, 1559, 1782
MboI GATC 3 cut(s) 973, 1557, 1780
MfeI CAATTG 1 cut(s) 2109
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 2 cut(s) 127, 172
MlsI TGGCCA 1 cut(s) 953
MluNI TGGCCA 1 cut(s) 953
MmeI TCCRAC 1 cut(s) 1972
Mox20I TGGCCA 1 cut(s) 953
MroNI GCCGGC 1 cut(s) 1228
MroXI GAANNNNTTC 2 cut(s) 1299, 1892
MscI TGGCCA 1 cut(s) 953
MseI TTAA 4 cut(s) 525, 624, 912, 1241
MslI CAYNNNNRTG 1 cut(s) 1746
Msp20I TGGCCA 1 cut(s) 953
MspI CCGG 2 cut(s) 1229, 1764
MunI CAATTG 1 cut(s) 2109
Mva1269I GAATGC 1 cut(s) 680
MwoI GCNNNNNNNGC 3 cut(s) 1225, 1820, 1859
NaeI GCCGGC 1 cut(s) 1230
NdeII GATC 3 cut(s) 973, 1557, 1780
NgoMIV GCCGGC 1 cut(s) 1228
NlaIII CATG 9 cut(s) 176, 444, 524, 800, 1133, 1216, 1667, 1857, 2018
NlaIV GGNNCC 6 cut(s) 62, 217, 975, 1198, 1353, 1861
NmuCI GTSAC 1 cut(s) 1657
NspI RCATGY 1 cut(s) 1857
OliI CACNNNNGTG 1 cut(s) 1746
PaeR7I CTCGAG 1 cut(s) 962
PagI TCATGA 2 cut(s) 172, 1212
PctI GAATGC 1 cut(s) 680
PdiI GCCGGC 1 cut(s) 1230
PdmI GAANNNNTTC 2 cut(s) 1299, 1892
PkrI GCNGC 2 cut(s) 37, 1594
Psp124BI GAGCTC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 1595
PspN4I GGNNCC 6 cut(s) 62, 217, 975, 1198, 1353, 1861
PspPI GGNCC 4 cut(s) 267, 404, 423, 1909
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 1 cut(s) 1614
RsaNI GTAC 1 cut(s) 1613
RseI CAYNNNNRTG 1 cut(s) 1746
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 4 cut(s) 525, 624, 912, 1241
SatI GCNGC 2 cut(s) 36, 1593
Sau3AI GATC 3 cut(s) 973, 1557, 1780
Sau96I GGNCC 4 cut(s) 267, 404, 423, 1909
SduI GDGCHC 2 cut(s) 127, 172
SfaNI GCATC 3 cut(s) 451, 1003, 1744
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 2 cut(s) 404, 1909
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 1746
SmlI CTYRAG 4 cut(s) 962, 1061, 1769, 1880
SmoI CTYRAG 4 cut(s) 962, 1061, 1769, 1880
SpeI ACTAGT 1 cut(s) 191
SsiI CCGC 2 cut(s) 278, 678
SspMI CTAG 5 cut(s) 87, 137, 192, 570, 1917
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 5 cut(s) 615, 926, 1347, 1689, 1840
TaaI ACNGT 4 cut(s) 167, 1617, 1735, 1977
TaqI TCGA 2 cut(s) 25, 963
TatI WGTACW 1 cut(s) 1612
Tru1I TTAA 4 cut(s) 525, 624, 912, 1241
Tru9I TTAA 4 cut(s) 525, 624, 912, 1241
TscAI CASTG 5 cut(s) 471, 718, 961, 1042, 1660
TseFI GTSAC 1 cut(s) 1657
TseI GCWGC 2 cut(s) 35, 1592
Tsp45I GTSAC 1 cut(s) 1657
TspGWI ACGGA 3 cut(s) 796, 1532, 2126
TspRI CASTG 5 cut(s) 471, 718, 961, 1042, 1660
VpaK11BI GGWCC 2 cut(s) 404, 1909
XapI RAATTY 5 cut(s) 433, 736, 1025, 1255, 1891
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 1857
XhoI CTCGAG 1 cut(s) 962
XmiI GTMKAC 1 cut(s) 2124
XmnI GAANNNNTTC 2 cut(s) 1299, 1892
XspI CTAG 5 cut(s) 87, 137, 192, 570, 1917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.