Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012672

Physical Location & Seq

Genomic Coordinates Forward (+)

60449704 .. 60453778

Gene Structure 4075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGCCATTAGAGCTTCAAACACAAGCGCTGCCGCCGAGTCTTCTTCTGCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCGAGGACGTCCACCCCTAGCTCATCAACGATGGTGGAAACGTCAACATTGTGTCCGTCGAAGACGGCGTCGTTTCTCTCAAGCTCCAAGAGTGAGTTTATGATTGTAAGTGCAGGCAGTCTCGACATATTGAGGCCAGCGAAGAATTTTGAACTATTGATGCTATATGGTAGCATGTTGCCAATTGCAATATGTGCAGTTTTTCTAACTCAAATAGGAGAGGCACATTCCTTGAAGATAGAGAAAATTTTGTTTCAAGGCAAATCAGACTATCAGAATGTGATGGTCTTCCACGTAACTTGCACTTTTGAAGATTTATCAACCTATGGAAAGGTTTTGGTTATCAGTGGAGGAGATCGTGGTGTAATGAGGGAAGTGGCTCGTCATTCTTCTGTCGAGCAAATAGATATATGTCAGATTGATAAGTTGGTTGTTGATGTAAGAGTCGCATTTTCAAAGGCTGTTCCAGCAGGAACTTATGATGCAATAATTGTGGACTCTTCTGATCCCATCGGTAATACTGATGACTTTGCTTTTAGGACACCCAAGTTCTGGCAAATCCACTTTGCTCACGACCCTTACAGGAAAACTAGACTCCAACTTAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

242

Amino Acids

26.68

Weight (kDa)

6.95

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	111 - 155	2.2e-09	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	133 - 186	1.2e-11	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012672)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g15750
rosa_laevigata	RLG00000004237 RLG00000009931 RLG00000019516 RLG00000021961 RLG00000034332 RLG00000034468
rosa_multiflora	Rmu_sc0000082.1_g000085
rosa_roxburghii	Rroxscaffold_7G00199200
rosa_rugosa	Rorug04G0069400 Rorug05G0047700 Rorug07G0225300
rosa_samantha	Rh2AG306900 Rh2DG330600 Rh2DG406000 Rh5BG138000 Rh7BG361300 Rh7CG473000 Rh7DG442300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	666
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	614
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	259, 360
AcyI	GRCGYC	3 cut(s)	5, 122, 182
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	6 cut(s)	20, 266, 349, 371, 425, 570
AluBI	AGCT	4 cut(s)	16, 87, 135, 198
AluI	AGCT	4 cut(s)	16, 87, 135, 198
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	115
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	2 cut(s)	71, 248
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	259, 360
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspLEI	GCGC	2 cut(s)	7, 31
AsuC2I	CCSGG	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	3 cut(s)	35, 182, 394
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	139, 391, 632
BceAI	ACGGC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	132, 705
BfoI	RGCGCY	2 cut(s)	8, 32
BisI	GCNGC	2 cut(s)	32, 35
BlsI	GCNGC	2 cut(s)	33, 36
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	264, 586
BpiI	GAAGAC	3 cut(s)	35, 182, 394
BpuEI	CTTGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	3 cut(s)	5, 122, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	246, 330
BshFI	GGCC	2 cut(s)	73, 250
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	73, 250
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	469, 619
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	73, 250
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	2 cut(s)	469, 619
BssNI	GRCGYC	3 cut(s)	5, 122, 182
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	619
BstACI	GRCGYC	3 cut(s)	5, 122, 182
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	229, 252
BstH2I	RGCGCY	2 cut(s)	8, 32
BstHHI	GCGC	2 cut(s)	7, 31
BstKTI	GATC	2 cut(s)	472, 622
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	469, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 84, 308, 581
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	3 cut(s)	35, 182, 394
BsuRI	GGCC	2 cut(s)	73, 250
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	229, 252
CfoI	GCGC	2 cut(s)	7, 31
CseI	GACGC	1 cut(s)	171
CspCI	CAANNNNNGTGG	6 cut(s)	129, 164, 395, 430, 588, 623
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	8 cut(s)	16, 73, 87, 135, 198, 250, 494, 575
CviKI_1	RGCY	8 cut(s)	16, 73, 87, 135, 198, 250, 494, 575
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	471, 621
DpnII	GATC	2 cut(s)	469, 619
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	32, 35
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	32, 35
FspBI	CTAG	2 cut(s)	132, 705
GlaI	GCGC	2 cut(s)	6, 30
GluI	GCNGC	2 cut(s)	32, 35
HaeII	RGCGCY	2 cut(s)	8, 32
HaeIII	GGCC	2 cut(s)	73, 250
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	2 cut(s)	7, 31
Hin1I	GRCGYC	3 cut(s)	5, 122, 182
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	5, 29
HinP1I	GCGC	2 cut(s)	5, 29
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	5 cut(s)	40, 62, 558, 611, 708
HpaII	CCGG	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	126, 159, 610
Hpy188I	TCNGA	4 cut(s)	382, 390, 531, 619
Hpy188III	TCNNGA	3 cut(s)	115, 236, 686
Hpy8I	GTNNAC	3 cut(s)	126, 159, 610
Hpy99I	CGWCG	2 cut(s)	175, 187
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	3 cut(s)	122, 155, 408
HpyCH4V	TGCA	5 cut(s)	227, 302, 311, 417, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 84, 308, 581
HpySE526I	ACGT	3 cut(s)	122, 155, 408
Hsp92I	GRCGYC	3 cut(s)	5, 122, 182
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	5, 29
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	469, 619
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	7 cut(s)	71, 213, 264, 570, 594, 652, 682
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	264, 586
MaeI	CTAG	2 cut(s)	132, 705
MaeII	ACGT	3 cut(s)	122, 155, 408
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	471, 621
MboI	GATC	2 cut(s)	469, 619
MboII	GAAGA	9 cut(s)	35, 38, 187, 268, 361, 394, 437, 495, 606
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	5 cut(s)	79, 259, 297, 360, 603
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	49, 56, 567, 605, 702
MnlI	CCTC	5 cut(s)	111, 240, 328, 458, 477
MseI	TTAA	1 cut(s)	717
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	13, 84, 308, 581
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	469, 619
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	49, 63
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	666
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	33, 36
PleI	GAGTC	5 cut(s)	48, 56, 566, 605, 702
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	5 cut(s)	48, 56, 566, 605, 702
Ppu21I	YACGTR	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	2 cut(s)	32, 35
Sau3AI	GATC	2 cut(s)	469, 619
SchI	GAGTC	5 cut(s)	49, 56, 567, 605, 702
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	264, 586
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	115, 193
SmoI	CTYRAG	2 cut(s)	115, 193
Sse9I	AATT	5 cut(s)	79, 259, 297, 360, 603
SsiI	CCGC	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	132, 705
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	3 cut(s)	125, 158, 411
TaqI	TCGA	4 cut(s)	116, 173, 237, 510
TasI	AATT	5 cut(s)	79, 259, 297, 360, 603
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	466
Tth111I	GACNNNGTC	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	666
XapI	RAATTY	2 cut(s)	259, 360
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	115
XspI	CTAG	2 cut(s)	132, 705
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.