Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012672

Physical Location & Seq

Genomic Coordinates Forward (+)

43215290 .. 43217663

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTTATACAGTGTCGATGGATTTTCGTGAGGAGTGAGTTTATGATTGTAAGTGCAGGCAGTCTCGACATATTGAGGCCGGCGAAGAATTTTGAACTATTGATGCTATATGGTAGCATGTTGCCAATTGCAATACGTGCAGTTTTTCTAACTCAAATAGGTAATCACCATGGAGAGTTGGTTTTCAGCGTTGTCAGATGTGCTTTTGTCCAAGTGAGAGGCACATTCCTTGAAGATAGAGAAAATTTTGTTTCAAGGCAAATCAGACTATCAGAATGTGATGGTCTTCCACAAATGATTACTCATCTTCCTCTCTGCCCAATTCCAAACCCCAAGAAGGTTTTGGTTATCAGTGGAGGAGATGGTGGTGTAATGAGGGAAGTGGCTCGTCATTCTTCTGTCGAGCAAATAGATATATGTGAGATTGATAAGTTGGTTGTTGATGTTTCAAAACAGTTTTTCCCTCGTGTAGTTATTGGATATGAGGATCCCAGGGTGACACTCCATGTTGGTGATGGAGTCGCATTTTCAAAGGCTGTTCCAGCAGGAACTTATGATGCAATAATTGTGGACTCTTCTAATCCCAGAGGACACCCAAGTTCTGGCAAATCCACTTTGCTCACGACCCTTGCAGGAAAACTGGACTCCAACTTAAAGGTTAGTAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

224

Amino Acids

24.61

Weight (kDa)

7.69

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	98 - 198	7.1e-39	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012672)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g15750
rosa_laevigata	RLG00000004237 RLG00000009931 RLG00000019516 RLG00000021961 RLG00000034332 RLG00000034468
rosa_multiflora	Rmu_sc0000082.1_g000085
rosa_roxburghii	Rroxscaffold_7G00199200
rosa_rugosa	Rorug04G0069400 Rorug05G0047700 Rorug07G0225300
rosa_samantha	Rh2AG306900 Rh2DG330600 Rh2DG406000 Rh5BG138000 Rh7BG361300 Rh7CG473000 Rh7DG442300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	2 cut(s)	88, 244
AfiI	CCNNNNNNNGG	2 cut(s)	337, 602
AgsI	TTSAA	5 cut(s)	95, 233, 255, 450, 531
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	1 cut(s)	666
AluI	AGCT	1 cut(s)	666
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	482, 495
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	88, 244
AsuHPI	GGTGA	3 cut(s)	158, 508, 524
BamHI	GGATCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	278
BccI	CCATC	4 cut(s)	12, 275, 356, 509
BciT130I	CCWGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	93, 547
BpiI	GAAGAC	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	169, 491, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 602
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	3 cut(s)	169, 491, 492
BseLI	CCNNNNNNNGG	2 cut(s)	337, 602
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	2 cut(s)	46, 372
BsgI	GTGCAG	2 cut(s)	75, 159
BshFI	GGCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	337, 602
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	487
Bsp19I	CCATGG	1 cut(s)	169
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	482, 495
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	645
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	169, 491, 492
BssMI	GATC	1 cut(s)	487
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	12, 456
Bst6I	CTCTTC	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	58, 81
BstDSI	CCRYGG	1 cut(s)	169
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 542
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	17, 358
Cac8I	GCNNGC	2 cut(s)	58, 81
Cfr10I	RCCGGY	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	3 cut(s)	118, 170, 506
CviJI	RGCY	4 cut(s)	79, 386, 536, 666
CviKI_1	RGCY	4 cut(s)	79, 386, 536, 666
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	3 cut(s)	121, 173, 509
FatI	CATG	3 cut(s)	117, 169, 505
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	3 cut(s)	121, 173, 509
HinfI	GANTC	3 cut(s)	519, 572, 644
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	3 cut(s)	158, 508, 524
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	197, 266, 274
Hpy188III	TCNNGA	3 cut(s)	28, 65, 622
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	12, 456
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	56, 131, 140, 560, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 542
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	121, 173, 509
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	487
LweI	GCATC	2 cut(s)	93, 547
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	6 cut(s)	97, 245, 278, 299, 387, 567
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	5 cut(s)	88, 126, 244, 321, 564
MlyI	GAGTC	3 cut(s)	528, 566, 638
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	9 cut(s)	24, 69, 212, 321, 350, 369, 474, 478, 581
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	137, 542
NaeI	GCCGGC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	487
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	121, 173, 509
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	121
PasI	CCCWGGG	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	602
PleI	GAGTC	3 cut(s)	527, 566, 638
PpsI	GAGTC	3 cut(s)	527, 566, 638
Ppu21I	YACGTR	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	653
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	3 cut(s)	528, 566, 638
ScrFI	CCNGG	1 cut(s)	493
SetI	ASST	5 cut(s)	139, 163, 342, 660, 668
SfaNI	GCATC	2 cut(s)	93, 547
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	88, 126, 244, 321, 564
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	12, 456
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	16, 66, 402
TasI	AATT	5 cut(s)	88, 126, 244, 321, 564
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	2 cut(s)	17, 358
TseFI	GTSAC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	496
TspRI	CASTG	2 cut(s)	17, 358
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	88, 244
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	340, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.