Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012672

Physical Location & Seq

Genomic Coordinates Reverse (-)

41934693 .. 41938257

Gene Structure 3565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGCCTATCAGAAATGATTACTCATCTTCCTCTCTGCCCAATTCCAAACCCCAAGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGTCTAATGAGGGAATTGGCTCGTCATTCTTCTGTCGAGCAAATAGATATATGTGAGATTGATAAGTTGGTTGTTGACGTTTCAACACAGTTTTTCCCTCGTGTAGCTATTGGATATGAGGATCCCAGGGTGACACTCCATGTTGGTGATGGAGTCGCATTTTCAAAGGCTGTTCCAGCAGGAACTTATGATGCAATAATTATGGACTCTTCTGATCCCATAGGTAATACTGATGACTTTGCTTTTAGGACACCCAAGTTCTGGCAAATCCACTTTGCTCACGACCCTTGCCGGAAAACTGGACTCCAACTTAAAGAAATTAGGTGTTCTAAAAGTGTAAAGTTGAAGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

147

Amino Acids

16.21

Weight (kDa)

6.18

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	4 - 114	4e-42	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012672)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g15750
rosa_laevigata	RLG00000004237 RLG00000009931 RLG00000019516 RLG00000021961 RLG00000034332 RLG00000034468
rosa_multiflora	Rmu_sc0000082.1_g000085
rosa_roxburghii	Rroxscaffold_7G00199200
rosa_rugosa	Rorug04G0069400 Rorug05G0047700 Rorug07G0225300
rosa_samantha	Rh2AG306900 Rh2DG330600 Rh2DG406000 Rh5BG138000 Rh7BG361300 Rh7CG473000 Rh7DG442300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AclWI	GGATC	3 cut(s)	203, 216, 296
AfiI	CCNNNNNNNGG	2 cut(s)	58, 348
AgsI	TTSAA	3 cut(s)	171, 252, 433
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
AlwI	GGATC	3 cut(s)	203, 216, 296
AsuHPI	GGTGA	2 cut(s)	229, 245
BamHI	GGATCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	186
BccI	CCATC	2 cut(s)	77, 230
BciT130I	CCWGG	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	212, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 348
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	212, 213
BseLI	CCNNNNNNNGG	2 cut(s)	58, 348
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	58, 348
Bsp143I	GATC	2 cut(s)	208, 301
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	203, 216, 296
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	212, 213
BssMI	GATC	2 cut(s)	208, 301
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	211, 304
BstMBI	GATC	2 cut(s)	208, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	4 cut(s)	107, 194, 257, 440
CviKI_1	RGCY	4 cut(s)	107, 194, 257, 440
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	2 cut(s)	210, 303
DpnII	GATC	2 cut(s)	208, 301
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	230
FaiI	YATR	7 cut(s)	137, 139, 204, 228, 276, 290, 308
FatI	CATG	1 cut(s)	226
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	240, 293, 390
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	2 cut(s)	229, 245
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	13, 301
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	52, 427
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	208, 301
LpnPI	CCDG	7 cut(s)	199, 226, 252, 276, 334, 372, 392
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	210, 303
MboI	GATC	2 cut(s)	208, 301
MboII	GAAGA	3 cut(s)	20, 108, 288
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	4 cut(s)	42, 101, 285, 405
MlyI	GAGTC	3 cut(s)	249, 287, 384
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	6 cut(s)	42, 71, 90, 195, 199, 430
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	208, 301
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	217
PasI	CCCWGGG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	348
PleI	GAGTC	3 cut(s)	248, 287, 384
PpsI	GAGTC	3 cut(s)	248, 287, 384
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	208, 301
SchI	GAGTC	3 cut(s)	249, 287, 384
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	5 cut(s)	63, 168, 196, 313, 413
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	42, 101, 285, 405
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	42, 101, 285, 405
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.