Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012672

Physical Location & Seq

Genomic Coordinates Reverse (-)

58950140 .. 58951144

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG406000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTGCCTACCAGAAATGATTACTTATCTTCCTCTCTGCCCAATTCCAAACCCCAAGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGTGTAATGAGGGAAGTGGCTCGTCATTCTTCTGTCGAGCAAATAGATATATGTGAGATTGATAAGTTGGTTGTTGATGTAAGTAAAAAAAAAAAAATGAAACTTTTGGATTTATTCTTCATTGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko00960 ko01100 ko01110 map00270 map00330 map00410 map00480 map00960 map01100 map01110

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

72

Amino Acids

7.97

Weight (kDa)

7.65

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	5 - 59	3.4e-23	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012672)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g15750
rosa_laevigata	RLG00000004237 RLG00000009931 RLG00000019516 RLG00000021961 RLG00000034332 RLG00000034468
rosa_multiflora	Rmu_sc0000082.1_g000085
rosa_roxburghii	Rroxscaffold_7G00199200
rosa_rugosa	Rorug04G0069400 Rorug05G0047700 Rorug07G0225300
rosa_samantha	Rh2AG306900 Rh2DG330600 Rh2DG406000 Rh5BG138000 Rh7BG361300 Rh7CG473000 Rh7DG442300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	58
BccI	CCATC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	107, 213
CviKI_1	RGCY	2 cut(s)	107, 213
FaiI	YATR	2 cut(s)	137, 139
HpyAV	CCTTC	1 cut(s)	52
LpnPI	CCDG	1 cut(s)	24
MboII	GAAGA	3 cut(s)	20, 108, 196
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	3 cut(s)	42, 71, 90
MseI	TTAA	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	217
SetI	ASST	1 cut(s)	63
SgeI	CNNG	4 cut(s)	23, 67, 120, 136
Sse9I	AATT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	196, 200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.