Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012672

Physical Location & Seq

Genomic Coordinates Reverse (-)

45179070 .. 45190976

Gene Structure 11907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTATACGGTGTCGATGGATTTTCGTGAGGAGTGAGTTCATGATTGTAAGTGCAGGCGGTCTCGACATATTGAGGCTGGCAAAGAATTTTGAACTATTGATGCTATATGGTAGCATGTTGCTAATTGCAATACGTGCAGTTTTTCTAACTCAAATAGGTAATCACCATGGAGAGTTGGTTTTCAGCGTTGTCAAATGTGCTTTTGTTCAAGTTTTGGTTATCGGTGGAGGAGATGGTGGTGTAATGAGGGAAGTGGCTCGTCATTCTTCCGTCGAGCAAATAGATATATGTGAGATTGATAAGTTGGTTGTTGATGCAAATGGGCATAAAGAATTAGCCGTGAATTGGGACTTGAAAGTTGCATATATTGAAGAAGTTGGGAAGACCAGGTTTGGGAGTTTAAAGATTTTGCTAACCAACACCAGCATCTTCCACAGCTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004766 GO:0005575 GO:0005623 GO:0005886 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044464 GO:0071704 GO:0071944 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

149

Amino Acids

16.63

Weight (kDa)

6.95

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	71 - 107	1e-13	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012672)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g15750
rosa_laevigata	RLG00000004237 RLG00000009931 RLG00000019516 RLG00000021961 RLG00000034332 RLG00000034468
rosa_multiflora	Rmu_sc0000082.1_g000085
rosa_roxburghii	Rroxscaffold_7G00199200
rosa_rugosa	Rorug04G0069400 Rorug05G0047700 Rorug07G0225300
rosa_samantha	Rh2AG306900 Rh2DG330600 Rh2DG406000 Rh5BG138000 Rh7BG361300 Rh7CG473000 Rh7DG442300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	348, 396
AgsI	TTSAA	4 cut(s)	95, 212, 358, 374
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	1 cut(s)	441
AluI	AGCT	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	441
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	12, 230
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	3 cut(s)	93, 307, 438
BpiI	GAAGAC	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 396
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	348, 396
BseRI	GAGGAG	2 cut(s)	46, 246
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	2 cut(s)	75, 159
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	348, 396
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	58, 81
BstDSI	CCRYGG	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	58, 81
CciI	TCATGA	1 cut(s)	42
CsiI	ACCWGGT	1 cut(s)	389
CviAII	CATG	3 cut(s)	43, 118, 170
CviJI	RGCY	4 cut(s)	79, 260, 341, 441
CviKI_1	RGCY	4 cut(s)	79, 260, 341, 441
DraI	TTTAAA	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	3 cut(s)	46, 121, 173
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	42, 117, 169
Fnu4HI	GCNGC	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	442
GluI	GCNGC	1 cut(s)	442
Hin1II	CATG	3 cut(s)	46, 121, 173
HphI	GGTGA	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	28, 43, 65
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	6 cut(s)	56, 131, 140, 320, 365, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	46, 121, 173
LpnPI	CCDG	5 cut(s)	42, 65, 376, 403, 439
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	3 cut(s)	93, 307, 438
MabI	ACCWGGT	1 cut(s)	389
MaeII	ACGT	1 cut(s)	136
MboII	GAAGA	4 cut(s)	261, 386, 397, 424
MluCI	AATT	4 cut(s)	88, 126, 335, 346
MnlI	CCTC	4 cut(s)	24, 69, 224, 243
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	169
NlaIII	CATG	3 cut(s)	46, 121, 173
NspI	RCATGY	1 cut(s)	121
PagI	TCATGA	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	391
SetI	ASST	4 cut(s)	139, 163, 395, 443
SexAI	ACCWGGT	1 cut(s)	389
SfaNI	GCATC	3 cut(s)	93, 307, 438
Sse9I	AATT	4 cut(s)	88, 126, 335, 346
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	16, 66, 276
TasI	AATT	4 cut(s)	88, 126, 335, 346
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	1 cut(s)	441
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	262
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.