RLG00000010210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014708
Physical Location & Seq
Forward (+)
64251538 .. 64252793
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010210

Sequence Viewer

Length: 813 bp
ATGGTGTGGGAGATGGCATCGTGGAGGGTGTGGGAGACGGAGAGGAGGAGGTTGAGGGCCGGAGGTGGAGGTGGGGAAGTCAGCGAAGTCGGTGAGCTGGGCCTAGAGGATGATGACTCTACTCGTGACGTTGTTTGTTACATCAAATTGAGTGATCTGTCACCACCACCAACACGAGCAGTAGCTACGTTTGAGCACGAAACATATTATGATTCTGAAACCCGTGGTTCTGACCCCTTTCAGTGGGGTTGCGATCGCTTCGGGTCCCAAATTCTCTTCGCCGGCAGCAACCAAGGCGTACGTGACTCCATTAACGGCAAGTCGGTTAGAGGAGAAATTGTTGCCTTTGATCCTAATTCGTGTCCGAAACCAAAATTCAAGTTCCCTAAATTCACACGACCGCGTCAACATCATTATCAATTCCCAATTGTGCTGTTGGAGGTGGAGGGCAGACTCTATTGTCTTGACACTAGAAGCCAGCAATATTATAGTACTGCTCCCAATTTGATTCTCAGACCAAACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTATTCGACCCCGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCTCCTCCGACTATACTCTACGACGGGAAATCTGACAAGCTGAAAGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCTGGGGTTTACAGCTATGACGTGAGCCGACCTGAGAGAGGATGGATAAAGTTGCACTCTCCTCTAGCAACTACTCTTCCCTTTGTTGAGGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.8

Weight (kDa)

5.36

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 111 - 267 2.7e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 459
AccII CGCG 1 cut(s) 403
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 3 cut(s) 270, 374, 389
AfaI GTAC 2 cut(s) 300, 493
AfiI CCNNNNNNNGG 2 cut(s) 243, 752
AgsI TTSAA 1 cut(s) 379
AjiI CACGTC 1 cut(s) 736
AluBI AGCT 4 cut(s) 97, 185, 655, 729
AluI AGCT 4 cut(s) 97, 185, 655, 729
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 344
AoxI GGCC 3 cut(s) 57, 100, 591
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 3 cut(s) 270, 374, 389
ArsI GACNNNNNNTTYG 2 cut(s) 681, 713
AsiSI GCGATCGC 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 57, 100, 264
AsuHPI GGTGA 4 cut(s) 104, 153, 518, 587
AvaII GGWCC 1 cut(s) 264
BauI CACGAG 2 cut(s) 123, 174
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 297
BccI CCATC 3 cut(s) 7, 572, 750
BceAI ACGGC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 3 cut(s) 104, 471, 779
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 493
Bme18I GGWCC 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 736
BmgT120I GGNCC 3 cut(s) 57, 100, 264
BmiI GGNNCC 3 cut(s) 265, 266, 543
BmsI GCATC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 223, 292, 537
BsaXI ACNNNNNCTCC 4 cut(s) 324, 354, 526, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 752
Bse118I RCCGGY 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 223, 292, 537
BseGI GGATG 2 cut(s) 115, 761
BseLI CCNNNNNNNGG 2 cut(s) 243, 752
BseMII CTCAG 2 cut(s) 526, 738
BseRI GAGGAG 6 cut(s) 58, 61, 345, 534, 609, 765
BseXI GCAGC 1 cut(s) 297
BseYI CCCAGC 2 cut(s) 97, 716
Bsh1236I CGCG 1 cut(s) 403
Bsh1285I CGRYCG 2 cut(s) 256, 401
BshFI GGCC 3 cut(s) 59, 102, 593
BsiEI CGRYCG 2 cut(s) 256, 401
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 60, 282
BsiWI CGTACG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 243, 752
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 59, 102, 593
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 154, 253, 349
BspACI CCGC 1 cut(s) 401
BspANI GGCC 3 cut(s) 59, 102, 593
BspCNI CTCAG 2 cut(s) 525, 739
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 265, 266, 543
BspPI GGATC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 223, 292, 537
BssMI GATC 3 cut(s) 154, 253, 349
BssSI CACGAG 2 cut(s) 123, 174
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 2 cut(s) 123, 174
Bst6I CTCTTC 2 cut(s) 281, 795
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 283, 479
BstDEI CTNAG 3 cut(s) 512, 694, 747
BstDSI CCRYGG 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 750
BstF5I GGATG 2 cut(s) 115, 761
BstFNI CGCG 1 cut(s) 403
BstKTI GATC 3 cut(s) 157, 256, 352
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 154, 253, 349
BstMCI CGRYCG 2 cut(s) 256, 401
BstMWI GCNNNNNNNGC 2 cut(s) 294, 548
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 59, 102, 593
BtgI CCRYGG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 736
BtsCI GGATG 2 cut(s) 115, 761
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 283, 479
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 3 cut(s) 57, 100, 264
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 299, 492
CviQI GTAC 2 cut(s) 299, 492
DdeI CTNAG 3 cut(s) 512, 694, 747
DpnI GATC 3 cut(s) 156, 255, 351
DpnII GATC 3 cut(s) 154, 253, 349
DrdI GACNNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 281, 795
EarI CTCTTC 2 cut(s) 281, 795
Eco130I CCWWGG 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 29
FaiI YATR 7 cut(s) 205, 210, 489, 534, 629, 668, 732
FaqI GGGAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 122, 768
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 3 cut(s) 104, 471, 779
GluI GCNGC 1 cut(s) 286
GsaI CCCAGC 2 cut(s) 101, 720
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 3 cut(s) 59, 102, 593
HapII CCGG 2 cut(s) 60, 282
HgaI GACGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 8 cut(s) 116, 212, 305, 453, 508, 611, 683, 703
HpaII CCGG 2 cut(s) 60, 282
HphI GGTGA 4 cut(s) 104, 153, 518, 587
Hpy166II GTNNAC 2 cut(s) 407, 724
Hpy188I TCNGA 6 cut(s) 217, 232, 366, 515, 624, 649
Hpy188III TCNNGA 5 cut(s) 125, 464, 608, 700, 707
Hpy8I GTNNAC 2 cut(s) 407, 724
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 1 cut(s) 566
HpyCH4IV ACGT 4 cut(s) 129, 188, 301, 735
HpyCH4V TGCA 2 cut(s) 557, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 548
HpyF3I CTNAG 3 cut(s) 512, 694, 747
HpySE526I ACGT 4 cut(s) 129, 188, 301, 735
KflI GGGWCCC 1 cut(s) 264
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 154, 253, 349
LmnI GCTCC 2 cut(s) 502, 547
LpnPI CCDG 9 cut(s) 73, 83, 295, 491, 561, 593, 685, 702, 759
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 26
MaeI CTAG 3 cut(s) 104, 471, 779
MaeII ACGT 4 cut(s) 129, 188, 301, 735
MaeIII GTNAC 4 cut(s) 125, 137, 159, 302
MalI GATC 3 cut(s) 156, 255, 351
MboI GATC 3 cut(s) 154, 253, 349
MboII GAAGA 2 cut(s) 268, 782
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 9 cut(s) 146, 270, 336, 355, 374, 389, 419, 426, 502
MlyI GAGTC 4 cut(s) 110, 299, 447, 620
MmeI TCCRAC 2 cut(s) 417, 647
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 1 cut(s) 312
MspI CCGG 2 cut(s) 60, 282
MunI CAATTG 1 cut(s) 426
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 294, 548
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 3 cut(s) 154, 253, 349
NgoMIV GCCGGC 1 cut(s) 281
NlaIV GGNNCC 3 cut(s) 265, 266, 543
NmuCI GTSAC 3 cut(s) 125, 159, 302
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 212, 508, 683, 703
Pfl23II CGTACG 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 402
PkrI GCNGC 1 cut(s) 287
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 4 cut(s) 110, 299, 447, 619
PpsI GAGTC 4 cut(s) 110, 299, 447, 619
Ppu21I YACGTR 1 cut(s) 302
PpuMI RGGWCCY 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 264
PspFI CCCAGC 2 cut(s) 97, 716
PspLI CGTACG 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 265, 266, 543
PspPI GGNCC 3 cut(s) 57, 100, 264
PspPPI RGGWCCY 1 cut(s) 264
PsyI GACNNNGTC 1 cut(s) 402
PvuI CGATCG 1 cut(s) 256
RgaI GCGATCGC 1 cut(s) 256
RsaI GTAC 2 cut(s) 300, 493
RsaNI GTAC 2 cut(s) 299, 492
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 3 cut(s) 154, 253, 349
Sau96I GGNCC 3 cut(s) 57, 100, 264
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 4 cut(s) 110, 299, 447, 620
SduI GDGCHC 1 cut(s) 198
SfaAI GCGATCGC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 26
SgfI GCGATCGC 1 cut(s) 256
SinI GGWCC 1 cut(s) 264
Sse9I AATT 9 cut(s) 146, 270, 336, 355, 374, 389, 419, 426, 502
SsiI CCGC 1 cut(s) 401
SspI AATATT 1 cut(s) 485
SspMI CTAG 3 cut(s) 104, 471, 779
StyI CCWWGG 1 cut(s) 292
TaiI ACGT 4 cut(s) 132, 191, 304, 738
TaqI TCGA 1 cut(s) 564
TasI AATT 9 cut(s) 146, 270, 336, 355, 374, 389, 419, 426, 502
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 4 cut(s) 212, 508, 683, 703
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 3 cut(s) 125, 159, 302
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 3 cut(s) 125, 159, 302
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 750
XapI RAATTY 3 cut(s) 270, 374, 389
XspI CTAG 3 cut(s) 104, 471, 779
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.