Rroxscaffold_5G00333290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014708
Physical Location & Seq
Reverse (-)
712465 .. 715727
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333290.1

Sequence Viewer

Length: 834 bp
ATGGTATCGTCCGAGGTGATCAATGCTCTCGCAAACCCCGTTTTGGGAGTCCTGCTTGTTGGATTCTTTGTAAAGGCCACACCTATCGCTCAAGACATTCTAAAAGACTGGAAACGTACCAACGAGGACATACTGGAAGATTGCATGGAGCAGATGAGAATCCTAGCAAAAGAAAAATCAGGGAGAAAAGAGATGATTCAACGGGGATTAGCAGCAGCAGCAGCAAGGTTAAGAGGAGGAATTGGATTAGGTTCTTTAAGGCAAATTAGCAGCAGCTTTTCAGATCATGGATTCATCAGAAGAAGGTATTCTTCCATGGAGACGACGAAGTCCTACACTTGTGTTTCTGTGGAGGGCAGACTCTACTGTCTTGACACTAGAAGCCAACAATATTATAGTACTGCTCCCAATTTCATTCTCAGACCGAACAATCACCACTATACCGAGGCTCCTCCTATTTTTGCAGTATTCGACCCTGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCTCCTCCAGCTATACTCTACGATGAGAAATCCCACAAGCTGAACGAGTTTTTGTATTGCCCTGTCGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCCGGGGTATACCTCTTTGACGTGAGCCGACCCGAGAAAGGATGGATAGAGTTGCACTCTCCTCTAGCAACCACTCTTCCCTTTGTTAAGGGTTATTGGGGTGACACTACAGAGCTCGCCGATCATCATGGTGATGGAGGAACCCTAATATTTACCTTTGACTGTACAAGTGGATATAAAGTTAATGATGGTTTCATATATTATGGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.16

Weight (kDa)

5.68

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 328, 366
AccI GTMKAC 1 cut(s) 630
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 3 cut(s) 118, 400, 787
AfiI CCNNNNNNNGG 3 cut(s) 43, 44, 659
AgsI TTSAA 1 cut(s) 200
AjiI CACGTC 1 cut(s) 643
AluBI AGCT 4 cut(s) 276, 533, 562, 736
AluI AGCT 4 cut(s) 276, 533, 562, 736
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 4 cut(s) 75, 498, 621, 827
ApeKI GCWGC 6 cut(s) 212, 215, 218, 221, 270, 273
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
Asp700I GAANNNNTTC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 827
AsuC2I CCSGG 1 cut(s) 625
AsuHPI GGTGA 5 cut(s) 28, 425, 494, 734, 764
AvaI CYCGRG 1 cut(s) 653
BanII GRGCYC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 6 cut(s) 224, 227, 230, 233, 282, 285
BccI CCATC 4 cut(s) 479, 657, 749, 803
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 3 cut(s) 164, 378, 686
BfmI CTRYAG 1 cut(s) 729
BisI GCNGC 6 cut(s) 213, 216, 219, 222, 271, 274
BlsI GCNGC 6 cut(s) 214, 217, 220, 223, 272, 275
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 1 cut(s) 827
BmiI GGNNCC 2 cut(s) 450, 763
BmrFI CCNGG 1 cut(s) 625
BplI GAGNNNNNCTC 2 cut(s) 662, 694
BpmI CTGGAG 2 cut(s) 513, 536
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 4 cut(s) 12, 315, 444, 624
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 44, 659
Bse1I ACTGG 2 cut(s) 113, 138
Bse8I GATNNNNATC 1 cut(s) 158
BseDI CCNNGG 4 cut(s) 12, 315, 444, 624
BseGI GGATG 1 cut(s) 668
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 3 cut(s) 43, 44, 659
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 113, 138
BseRI GAGGAG 4 cut(s) 249, 441, 516, 672
BseXI GCAGC 6 cut(s) 224, 227, 230, 233, 282, 285
BshFI GGCC 4 cut(s) 77, 500, 623, 829
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 3 cut(s) 43, 44, 659
BsmAI GTCTC 1 cut(s) 314
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 4 cut(s) 77, 500, 623, 829
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 738
Bsp1407I TGTACA 1 cut(s) 785
Bsp143I GATC 3 cut(s) 18, 283, 742
Bsp19I CCATGG 1 cut(s) 315
BspANI GGCC 4 cut(s) 77, 500, 623, 829
BspCNI CTCAG 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 450, 763
BsrGI TGTACA 1 cut(s) 785
BsrI ACTGG 2 cut(s) 113, 138
BssECI CCNNGG 4 cut(s) 12, 315, 444, 624
BssMI GATC 3 cut(s) 18, 283, 742
BssNAI GTATAC 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 315
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 368, 785
Bst6I CTCTTC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 3 cut(s) 419, 601, 831
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 668
BstKTI GATC 3 cut(s) 21, 286, 745
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 3 cut(s) 18, 283, 742
BstMWI GCNNNNNNNGC 2 cut(s) 218, 221
BstSCI CCNGG 1 cut(s) 623
BstSFI CTRYAG 1 cut(s) 729
BstV1I GCAGC 6 cut(s) 224, 227, 230, 233, 282, 285
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 4 cut(s) 77, 500, 623, 829
BtgI CCRYGG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 668
Cac8I GCNNGC 1 cut(s) 738
Cfr13I GGNCC 1 cut(s) 827
Csp6I GTAC 3 cut(s) 117, 399, 786
CviAII CATG 4 cut(s) 145, 287, 316, 749
CviQI GTAC 3 cut(s) 117, 399, 786
DdeI CTNAG 3 cut(s) 419, 601, 831
DpnI GATC 3 cut(s) 20, 285, 744
DpnII GATC 3 cut(s) 18, 283, 742
DrdI GACNNNNNNGTC 2 cut(s) 328, 366
DseDI GACNNNNNNGTC 2 cut(s) 328, 366
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 148, 290, 319, 752
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FatI CATG 4 cut(s) 144, 286, 315, 748
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 6 cut(s) 213, 216, 219, 222, 271, 274
FokI GGATG 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 6 cut(s) 213, 216, 219, 222, 271, 274
FspBI CTAG 3 cut(s) 164, 378, 686
GluI GCNGC 6 cut(s) 213, 216, 219, 222, 271, 274
GsuI CTGGAG 2 cut(s) 513, 536
HaeIII GGCC 4 cut(s) 77, 500, 623, 829
HapII CCGG 1 cut(s) 624
Hin1II CATG 4 cut(s) 148, 290, 319, 752
HinfI GANTC 9 cut(s) 48, 63, 159, 196, 291, 360, 518, 590, 610
HpaII CCGG 1 cut(s) 624
HphI GGTGA 5 cut(s) 28, 425, 494, 734, 764
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 4 cut(s) 13, 283, 299, 422
Hpy188III TCNNGA 5 cut(s) 92, 371, 515, 607, 614
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 297, 473
HpyCH4III ACNGT 2 cut(s) 368, 785
HpyCH4IV ACGT 2 cut(s) 115, 642
HpyCH4V TGCA 3 cut(s) 144, 464, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 221
HpyF3I CTNAG 3 cut(s) 419, 601, 831
HpySE526I ACGT 2 cut(s) 115, 642
Hsp92II CATG 4 cut(s) 148, 290, 319, 752
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 283, 742
LmnI GCTCC 3 cut(s) 148, 409, 454
Lsp1109I GCAGC 6 cut(s) 224, 227, 230, 233, 282, 285
MaeI CTAG 3 cut(s) 164, 378, 686
MaeII ACGT 2 cut(s) 115, 642
MaeIII GTNAC 1 cut(s) 722
MalI GATC 3 cut(s) 20, 285, 744
MboI GATC 3 cut(s) 18, 283, 742
MboII GAAGA 4 cut(s) 149, 303, 312, 689
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 3 cut(s) 240, 264, 409
MlyI GAGTC 3 cut(s) 57, 354, 527
MmeI TCCRAC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 4 cut(s) 230, 257, 708, 804
MslI CAYNNNNRTG 2 cut(s) 750, 753
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 625
MwoI GCNNNNNNNGC 2 cut(s) 218, 221
NciI CCSGG 1 cut(s) 625
NcoI CCATGG 1 cut(s) 315
NdeII GATC 3 cut(s) 18, 283, 742
NlaIII CATG 4 cut(s) 148, 290, 319, 752
NlaIV GGNNCC 2 cut(s) 450, 763
NmuCI GTSAC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 6 cut(s) 63, 159, 196, 291, 590, 610
PflFI GACNNNGTC 1 cut(s) 328
PkrI GCNGC 6 cut(s) 214, 217, 220, 223, 272, 275
PleI GAGTC 3 cut(s) 56, 354, 526
PpsI GAGTC 3 cut(s) 56, 354, 526
Psp124BI GAGCTC 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 450, 763
PspPI GGNCC 1 cut(s) 827
PsyI GACNNNGTC 1 cut(s) 328
RsaI GTAC 3 cut(s) 118, 400, 787
RsaNI GTAC 3 cut(s) 117, 399, 786
RseI CAYNNNNRTG 2 cut(s) 750, 753
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 4 cut(s) 230, 257, 708, 804
SatI GCNGC 6 cut(s) 213, 216, 219, 222, 271, 274
Sau3AI GATC 3 cut(s) 18, 283, 742
Sau96I GGNCC 1 cut(s) 827
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 3 cut(s) 57, 354, 527
ScrFI CCNGG 1 cut(s) 625
SduI GDGCHC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 750, 753
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 3 cut(s) 240, 264, 409
SspI AATATT 2 cut(s) 392, 771
SspMI CTAG 3 cut(s) 164, 378, 686
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 1 cut(s) 623
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 368, 785
TaiI ACGT 2 cut(s) 118, 645
TaqI TCGA 2 cut(s) 471, 588
TaqII GACCGA 1 cut(s) 439
TasI AATT 3 cut(s) 240, 264, 409
TatI WGTACW 2 cut(s) 398, 785
TfiI GAWTC 6 cut(s) 63, 159, 196, 291, 590, 610
Tru1I TTAA 4 cut(s) 230, 257, 708, 804
Tru9I TTAA 4 cut(s) 230, 257, 708, 804
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 6 cut(s) 212, 215, 218, 221, 270, 273
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 3 cut(s) 283, 403, 805
Tth111I GACNNNGTC 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 3 cut(s) 164, 378, 686
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.