Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014708

Physical Location & Seq

Genomic Coordinates Forward (+)

66384685 .. 66386125

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTATCAGTGGGGATTAGCAGCAGCAGCAGCAAGGTTAAGAGGAGGGATTGGATTAGGTTCTTTAAGGAAAATTAGCAGCAGCTTTTCAGATCATGGATTTATCAGAAGAAGGTATTCTTCCATGGAGACGACGAAGTCCCTACACCTGTGTTTCTCTGAGCATATCGCAGCAACAGATGACTCTACTCGCGACGTTGTTCGCTCCATCAAATTGAGCGATTTGTTATCACCACCAACAACAACAACAGCAGCGGCAGCTACGTTTGAGCACGAAACATATCATGATTCTGAAACCCGTGGTTGGTCACCCTTTCCGTGGGGTTGCTGTCGCTTCGGGTCCCAAATTCTCTTCGCCGGCGGCAAACCAAGGCTCACGCGACTCCATTTACGGCAATTGGAGGGCAGACTCTACTGTCTTGACACTAGAAGCCAGCAATATTATAGTACTGCTCCTAATTTCATTCTCAGACCGAACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTATTCGACCCCGAAGGTGATGGAGAGTTTGAGGGCAAATGGTTGCCTCTGAAGTCGCCTCCTTCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAACGAGCTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCCAAGGTTTACCGCTTTGACGTGAGCCGACCCGAGAAAGGGTGGATAGAGTTGCACTCTCCCCTAGCAACCACCCTTCCTTTTGTTAAGGGTTGTTGGGGTGACACTGCAAACCTCGCCGATCATCATGGTGGTGGAGGAACCCTAATATTCACCTTTGACTGTACAAGTGGATGTAAAGTTAGTGATGGTTGCATATATTATGGGCCTCAGATCAGTAACAATATTAGTGTACAAGTTTTGCTCATGTCCCATAATTTAGATTCTTTGCAAGCCATGAAACCCCTCCTGCAGCTGCCGGAAGTCCCTCCTGAATTTCGCAATGATCCATGCGTGAGAGCAGTTGGTCCAACCGAGTGTTGTCTTGTGCATCTAGGAGATCAAAAAGTGTGCCTTATTCTTCACAAATATTTCTACGCATTATACTGTGACACTAATGATTTGGAGGAAGGTTACGAACTAGTTGATCATACCGGCAGAAACAAGGGGATTCTTCATCTCATGACGTTTGAATATCAAGTCACTCCCGACTTGGACATCGAGTACCGACTTCTCACTACTCGCAACTTTGAATACCATACCAAGCTGCCTAACAACGAATATGCAACGTATACCAATCAAGCCTGTCTGACTAAAGCCTTTGTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

49.61

Weight (kDa)

6.31

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00460
rosa_laevigata	RLG00000010210 RLG00000010225 RLG00000010230 RLG00000010234
rosa_multiflora	Rmu_sc0001259.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333290 Rroxscaffold_5G00333440 Rroxscaffold_7G00215820
rosa_rugosa	Rorug03G0300600 Rorug03G0301000 Rorug05G0508700
rosa_samantha	Rh4AG005100 Rh4AG005400 Rh4BG003900 Rh4CG005500 Rh4CG005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	136, 414
AccI	GTMKAC	1 cut(s)	1280
AccII	CGCG	2 cut(s)	192, 379
AciI	CCGC	3 cut(s)	254, 360, 682
AclWI	GGATC	1 cut(s)	989
AcsI	RAATTY	2 cut(s)	345, 983
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	448, 835, 903, 1214
AfiI	CCNNNNNNNGG	4 cut(s)	303, 318, 707, 708
AgsI	TTSAA	2 cut(s)	1181, 1241
AhlI	ACTAGT	1 cut(s)	1129
AjiI	CACGTC	1 cut(s)	691
AluBI	AGCT	6 cut(s)	84, 260, 610, 619, 964, 1255
AluI	AGCT	6 cut(s)	84, 260, 610, 619, 964, 1255
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	2 cut(s)	669, 875
ApoI	RAATTY	2 cut(s)	345, 983
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
Asp700I	GAANNNNTTC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	339, 875, 1016
AsuHPI	GGTGA	6 cut(s)	222, 300, 473, 542, 782, 814
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	339, 1016
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	3 cut(s)	215, 527, 851
BceAI	ACGGC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	1135
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	1129
BfaI	CTAG	4 cut(s)	426, 734, 1043, 1130
BfmI	CTRYAG	1 cut(s)	959
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	2 cut(s)	339, 1016
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	3 cut(s)	339, 875, 1016
BmiI	GGNNCC	4 cut(s)	340, 341, 498, 811
BmsI	GCATC	1 cut(s)	1048
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BsaJI	CCNNGG	6 cut(s)	123, 298, 317, 368, 492, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	4 cut(s)	303, 318, 707, 708
Bse118I	RCCGGY	2 cut(s)	356, 1142
Bse3DI	GCAATG	1 cut(s)	997
BseDI	CCNNGG	6 cut(s)	123, 298, 317, 368, 492, 672
BseGI	GGATG	1 cut(s)	848
BseLI	CCNNNNNNNGG	4 cut(s)	303, 318, 707, 708
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	3 cut(s)	150, 481, 893
BseRI	GAGGAG	2 cut(s)	57, 489
Bsh1236I	CGCG	2 cut(s)	192, 379
BshFI	GGCC	2 cut(s)	671, 877
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	3 cut(s)	357, 968, 1143
BslFI	GGGAC	4 cut(s)	124, 325, 904, 959
BslI	CCNNNNNNNGG	4 cut(s)	303, 318, 707, 708
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	4 cut(s)	124, 325, 904, 959
BsnI	GGCC	2 cut(s)	671, 877
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp1407I	TGTACA	2 cut(s)	833, 901
Bsp143I	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
Bsp19I	CCATGG	1 cut(s)	123
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	3 cut(s)	254, 360, 682
BspANI	GGCC	2 cut(s)	671, 877
BspCNI	CTCAG	3 cut(s)	151, 480, 892
BspFNI	CGCG	2 cut(s)	192, 379
BspHI	TCATGA	2 cut(s)	283, 1170
BspLI	GGNNCC	4 cut(s)	340, 341, 498, 811
BspMAI	CTGCAG	1 cut(s)	963
BspPI	GGATC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	997
BsrFI	RCCGGY	2 cut(s)	356, 1142
BsrGI	TGTACA	2 cut(s)	833, 901
BssAI	RCCGGY	2 cut(s)	356, 1142
BssECI	CCNNGG	6 cut(s)	123, 298, 317, 368, 492, 672
BssMI	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
BssNAI	GTATAC	1 cut(s)	1281
BssT1I	CCWWGG	3 cut(s)	123, 368, 672
Bst1107I	GTATAC	1 cut(s)	1281
Bst4CI	ACNGT	3 cut(s)	416, 833, 1097
Bst6I	CTCTTC	1 cut(s)	356
BstAUI	TGTACA	2 cut(s)	833, 901
BstC8I	GCNNGC	3 cut(s)	358, 434, 942
BstDEI	CTNAG	4 cut(s)	159, 467, 649, 879
BstDSI	CCRYGG	3 cut(s)	123, 298, 317
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	848
BstFNI	CGCG	2 cut(s)	192, 379
BstKTI	GATC	6 cut(s)	94, 793, 885, 997, 1051, 1138
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 29, 257, 503, 616, 785
BstPI	GGTNACC	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	959
BstUI	CGCG	2 cut(s)	192, 379
BstZ17I	GTATAC	1 cut(s)	1281
BsuRI	GGCC	2 cut(s)	671, 877
BtgI	CCRYGG	3 cut(s)	123, 298, 317
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	848
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	14, 774
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	358, 434, 942
CciI	TCATGA	2 cut(s)	283, 1170
Cfr10I	RCCGGY	2 cut(s)	356, 1142
Cfr13I	GGNCC	3 cut(s)	339, 875, 1016
Csp6I	GTAC	4 cut(s)	447, 834, 902, 1213
CviAII	CATG	8 cut(s)	95, 124, 284, 797, 916, 946, 999, 1171
CviQI	GTAC	4 cut(s)	447, 834, 902, 1213
DdeI	CTNAG	4 cut(s)	159, 467, 649, 879
DpnI	GATC	6 cut(s)	93, 792, 884, 996, 1050, 1137
DpnII	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
DrdI	GACNNNNNNGTC	2 cut(s)	136, 414
DseDI	GACNNNNNNGTC	2 cut(s)	136, 414
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	3 cut(s)	123, 368, 672
Eco47I	GGWCC	2 cut(s)	339, 1016
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	701
Eco91I	GGTNACC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	339
EcoO65I	GGTNACC	1 cut(s)	306
EcoT14I	CCWWGG	3 cut(s)	123, 368, 672
ErhI	CCWWGG	3 cut(s)	123, 368, 672
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	8 cut(s)	98, 127, 287, 800, 919, 949, 1002, 1174
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 1047, 1079
FaqI	GGGAC	4 cut(s)	124, 325, 904, 959
FatI	CATG	8 cut(s)	94, 123, 283, 796, 915, 945, 998, 1170
FbaI	TGATCA	1 cut(s)	1135
FblI	GTMKAC	1 cut(s)	1280
FokI	GGATG	1 cut(s)	855
FspBI	CTAG	4 cut(s)	426, 734, 1043, 1130
HaeIII	GGCC	2 cut(s)	671, 877
HapII	CCGG	3 cut(s)	357, 968, 1143
Hin1II	CATG	8 cut(s)	98, 127, 287, 800, 919, 949, 1002, 1174
HinfI	GANTC	8 cut(s)	182, 287, 381, 408, 638, 658, 932, 1159
HpaII	CCGG	3 cut(s)	357, 968, 1143
HphI	GGTGA	6 cut(s)	222, 300, 473, 542, 782, 814
Hpy166II	GTNNAC	3 cut(s)	679, 902, 1281
Hpy188I	TCNGA	8 cut(s)	91, 107, 160, 292, 470, 564, 882, 1299
Hpy188III	TCNNGA	8 cut(s)	191, 284, 419, 655, 662, 980, 1171, 1196
Hpy8I	GTNNAC	3 cut(s)	679, 902, 1281
Hpy99I	CGWCG	2 cut(s)	136, 197
HpyAV	CCTTC	5 cut(s)	105, 521, 585, 755, 1112
HpyCH4III	ACNGT	3 cut(s)	416, 833, 1097
HpyCH4IV	ACGT	5 cut(s)	195, 263, 690, 1175, 1277
HpyCH4V	TGCA	8 cut(s)	512, 724, 779, 864, 940, 961, 1039, 1274
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 29, 257, 503, 616, 785
HpyF3I	CTNAG	4 cut(s)	159, 467, 649, 879
HpySE526I	ACGT	5 cut(s)	195, 263, 690, 1175, 1277
Hsp92II	CATG	8 cut(s)	98, 127, 287, 800, 919, 949, 1002, 1174
KflI	GGGWCCC	1 cut(s)	339
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	1135
Kzo9I	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
LmnI	GCTCC	3 cut(s)	209, 457, 502
LweI	GCATC	1 cut(s)	1048
MaeI	CTAG	4 cut(s)	426, 734, 1043, 1130
MaeII	ACGT	5 cut(s)	195, 263, 690, 1175, 1277
MaeIII	GTNAC	6 cut(s)	306, 770, 887, 1097, 1121, 1189
MalI	GATC	6 cut(s)	93, 792, 884, 996, 1050, 1137
MboI	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
MboII	GAAGA	5 cut(s)	111, 120, 343, 1061, 1154
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	7 cut(s)	72, 212, 345, 395, 457, 925, 983
MlyI	GAGTC	3 cut(s)	176, 375, 402
MmeI	TCCRAC	1 cut(s)	1043
MreI	CGCCGGCG	1 cut(s)	356
MroNI	GCCGGC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	3 cut(s)	38, 65, 756
MslI	CAYNNNNRTG	2 cut(s)	798, 801
MspA1I	CMGCKG	2 cut(s)	254, 964
MspI	CCGG	3 cut(s)	357, 968, 1143
MunI	CAATTG	1 cut(s)	395
MvnI	CGCG	2 cut(s)	192, 379
MwoI	GCNNNNNNNGC	6 cut(s)	26, 29, 257, 503, 616, 785
NaeI	GCCGGC	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	8 cut(s)	98, 127, 287, 800, 919, 949, 1002, 1174
NlaIV	GGNNCC	4 cut(s)	340, 341, 498, 811
NmuCI	GTSAC	4 cut(s)	306, 770, 1097, 1189
NruI	TCGCGA	1 cut(s)	192
PagI	TCATGA	2 cut(s)	283, 1170
PdiI	GCCGGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	287, 638, 658, 932, 1159
PflFI	GACNNNGTC	1 cut(s)	136
PleI	GAGTC	3 cut(s)	176, 375, 402
PpsI	GAGTC	3 cut(s)	176, 375, 402
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	306
PspN4I	GGNNCC	4 cut(s)	340, 341, 498, 811
PspPI	GGNCC	3 cut(s)	339, 875, 1016
PspPPI	RGGWCCY	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	963
PsyI	GACNNNGTC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	964
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	4 cut(s)	448, 835, 903, 1214
RsaNI	GTAC	4 cut(s)	447, 834, 902, 1213
RseI	CAYNNNNRTG	2 cut(s)	798, 801
SaqAI	TTAA	3 cut(s)	38, 65, 756
Sau3AI	GATC	6 cut(s)	91, 790, 882, 994, 1048, 1135
Sau96I	GGNCC	3 cut(s)	339, 875, 1016
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	3 cut(s)	176, 375, 402
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	1048
SfcI	CTRYAG	1 cut(s)	959
SgrAI	CRCCGGYG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	339, 1016
SmiMI	CAYNNNNRTG	2 cut(s)	798, 801
SpeI	ACTAGT	1 cut(s)	1129
Sse9I	AATT	7 cut(s)	72, 212, 345, 395, 457, 925, 983
SsiI	CCGC	3 cut(s)	254, 360, 682
SspI	AATATT	4 cut(s)	440, 819, 895, 1079
SspMI	CTAG	4 cut(s)	426, 734, 1043, 1130
StyI	CCWWGG	3 cut(s)	123, 368, 672
TaaI	ACNGT	3 cut(s)	416, 833, 1097
TaiI	ACGT	5 cut(s)	198, 266, 693, 1178, 1280
TaqI	TCGA	2 cut(s)	519, 1209
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	7 cut(s)	72, 212, 345, 395, 457, 925, 983
TatI	WGTACW	3 cut(s)	446, 833, 901
TauI	GCSGC	2 cut(s)	257, 363
TfiI	GAWTC	5 cut(s)	287, 638, 658, 932, 1159
Tru1I	TTAA	3 cut(s)	38, 65, 756
Tru9I	TTAA	3 cut(s)	38, 65, 756
TscAI	CASTG	2 cut(s)	14, 781
TseFI	GTSAC	4 cut(s)	306, 770, 1097, 1189
Tsp45I	GTSAC	4 cut(s)	306, 770, 1097, 1189
TspDTI	ATGAA	3 cut(s)	451, 962, 1154
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	14, 781
Tth111I	GACNNNGTC	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	339, 1016
XapI	RAATTY	2 cut(s)	345, 983
XmiI	GTMKAC	1 cut(s)	1280
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	4 cut(s)	426, 734, 1043, 1130
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.