Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014708

Physical Location & Seq

Genomic Coordinates Reverse (-)

772155 .. 774810

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTGTCGTCCGAGGTGATCAATGCTCTCGCAAACCCCGTTTTGGGAGTCCTTCTTGTTGGATTCTTTGTAAAGGTCACACCTATCGCTCAAGACATTCTAAAAGACTGGAAACGTACCAACGAGGACATACTGGAAGATTGCAGGGATGAGATGAGAGAAATAGGCATGGATGTCTCAAAGGTGGAGGGCAGACTCTACTGTCTTGACACTAGAAGCCAGCAGTATTATAGTACTGCTCCCAATTTCATTCTCAGACCGAACTATCACCACTATACCGAGGCTCCTGCTTTTGTAGTATTCGACCCCGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCTCCTCAGGCGATACTCTATGATGAGAAATCCCACAAGCTGAACGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCCGGGGTTTACCTCTTTGACGTGAGCCGACCCGAGAAAGGATGGATAGAGTTGCACTCTCCTCTAGCAACCACTCTTCCCTTTGTTAAGGGTTGTTGGGGTGACACTGCAAAGCTCGCCGATCATCATGGTGGTGGAGGAACCCTAATATTTACCTTTGACTGTACAAGAGGATGTAAAGTTAGTGATGGTTTCATATATTATGGGCCTCAGATAAGTAACAATATTAGCGTACAAGTTTTGATCATGTCCTATAATTTAGATTCTTTGCAAGCCATGAAACCCCTCCTGCAGCTGCCGGAAATCCCTCTTGAATTTCGCAATGATCCATGCGTGAGAGCAGTTGGTCCAACCCAGTGTTGTCTTGTGCATCTAGGAGATCACAAAGTGTGCCTTATTCTTCACAAATATTTCTATGCATTATACCGTGACACTAATGATTTGGAGGAAGGTTACGAACTAGTTGATCATACCGGCAGAAACAAGGGGATTCTTCATCTCATGACGTTTGAATATCAAGTTACTCCCGACTTGGACATCGAGTACCGACTTCTCACTACTCGCAACTTAGAATACTATACCAAGCTGCCTAACAATGAATATGCAACGTATACCAAGCCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

41.06

Weight (kDa)

5.11

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00460
rosa_laevigata	RLG00000010210 RLG00000010225 RLG00000010230 RLG00000010234
rosa_multiflora	Rmu_sc0001259.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333290 Rroxscaffold_5G00333440 Rroxscaffold_7G00215820
rosa_rugosa	Rorug03G0300600 Rorug03G0301000 Rorug05G0508700
rosa_samantha	Rh4AG005100 Rh4AG005400 Rh4BG003900 Rh4CG005500 Rh4CG005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	1064
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	767
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	5 cut(s)	118, 235, 619, 687, 998
AfiI	CCNNNNNNNGG	3 cut(s)	43, 44, 491
AgsI	TTSAA	2 cut(s)	767, 965
AhlI	ACTAGT	1 cut(s)	913
AjiI	CACGTC	1 cut(s)	475
AluBI	AGCT	4 cut(s)	394, 568, 748, 1039
AluI	AGCT	4 cut(s)	394, 568, 748, 1039
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	330, 453, 659
ApeKI	GCWGC	3 cut(s)	745, 748, 1039
ApoI	RAATTY	1 cut(s)	767
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspS9I	GGNCC	2 cut(s)	659, 800
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	4 cut(s)	28, 260, 326, 566
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	800
AxyI	CCTNAGG	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	735, 757, 1026
BccI	CCATC	3 cut(s)	311, 489, 635
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BclI	TGATCA	3 cut(s)	18, 696, 919
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	4 cut(s)	213, 518, 827, 914
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	3 cut(s)	746, 749, 1040
BlsI	GCNGC	3 cut(s)	747, 750, 1041
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	800
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	659, 800
BmiI	GGNNCC	2 cut(s)	285, 595
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	1 cut(s)	802
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	12, 279, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 44, 491
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	3 cut(s)	113, 138, 808
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	12, 279, 456
BseGI	GGATG	4 cut(s)	154, 178, 500, 632
BseLI	CCNNNNNNNGG	3 cut(s)	43, 44, 491
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	3 cut(s)	268, 374, 677
BseNI	ACTGG	3 cut(s)	113, 138, 808
BseRI	GAGGAG	2 cut(s)	348, 504
BseXI	GCAGC	3 cut(s)	735, 757, 1026
BshFI	GGCC	3 cut(s)	332, 455, 661
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	456, 752, 927
BslI	CCNNNNNNNGG	3 cut(s)	43, 44, 491
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	332, 455, 661
BsoBI	CYCGRG	1 cut(s)	485
Bsp1407I	TGTACA	1 cut(s)	617
Bsp143I	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
BspANI	GGCC	3 cut(s)	332, 455, 661
BspCNI	CTCAG	3 cut(s)	267, 373, 676
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	2 cut(s)	285, 595
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	781
BsrFI	RCCGGY	1 cut(s)	926
BsrGI	TGTACA	1 cut(s)	617
BsrI	ACTGG	3 cut(s)	113, 138, 808
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	3 cut(s)	12, 279, 456
BssMI	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
BssNAI	GTATAC	1 cut(s)	1065
Bst1107I	GTATAC	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	203, 617, 881
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	221, 570, 726
BstDEI	CTNAG	5 cut(s)	254, 360, 433, 663, 1021
BstF5I	GGATG	4 cut(s)	154, 178, 500, 632
BstKTI	GATC	6 cut(s)	21, 577, 699, 781, 835, 922
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	735, 757, 1026
BstZ17I	GTATAC	1 cut(s)	1065
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	332, 455, 661
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	4 cut(s)	154, 178, 500, 632
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 815
Cac8I	GCNNGC	3 cut(s)	221, 570, 726
CciI	TCATGA	1 cut(s)	954
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	2 cut(s)	659, 800
Csp6I	GTAC	5 cut(s)	117, 234, 618, 686, 997
CviAII	CATG	6 cut(s)	169, 581, 700, 730, 783, 955
CviQI	GTAC	5 cut(s)	117, 234, 618, 686, 997
DdeI	CTNAG	5 cut(s)	254, 360, 433, 663, 1021
DpnI	GATC	6 cut(s)	20, 576, 698, 780, 834, 921
DpnII	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
DraIII	CACNNNGTG	1 cut(s)	841
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	874
FaeI	CATG	6 cut(s)	172, 584, 703, 733, 786, 958
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FatI	CATG	6 cut(s)	168, 580, 699, 729, 782, 954
FbaI	TGATCA	3 cut(s)	18, 696, 919
FblI	GTMKAC	1 cut(s)	1064
Fnu4HI	GCNGC	3 cut(s)	746, 749, 1040
FokI	GGATG	4 cut(s)	161, 185, 507, 639
Fsp4HI	GCNGC	3 cut(s)	746, 749, 1040
FspBI	CTAG	4 cut(s)	213, 518, 827, 914
GluI	GCNGC	3 cut(s)	746, 749, 1040
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	332, 455, 661
HapII	CCGG	3 cut(s)	456, 752, 927
Hin1II	CATG	6 cut(s)	172, 584, 703, 733, 786, 958
HinfI	GANTC	8 cut(s)	48, 63, 195, 350, 422, 442, 716, 943
HpaII	CCGG	3 cut(s)	456, 752, 927
HphI	GGTGA	4 cut(s)	28, 260, 326, 566
Hpy166II	GTNNAC	2 cut(s)	463, 1065
Hpy188I	TCNGA	3 cut(s)	13, 257, 666
Hpy188III	TCNNGA	8 cut(s)	92, 206, 347, 439, 446, 764, 955, 980
Hpy8I	GTNNAC	2 cut(s)	463, 1065
HpyAV	CCTTC	3 cut(s)	62, 305, 896
HpyCH4III	ACNGT	3 cut(s)	203, 617, 881
HpyCH4IV	ACGT	4 cut(s)	115, 474, 959, 1061
HpyCH4V	TGCA	8 cut(s)	144, 508, 563, 724, 745, 823, 872, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	5 cut(s)	254, 360, 433, 663, 1021
HpySE526I	ACGT	4 cut(s)	115, 474, 959, 1061
Hsp92II	CATG	6 cut(s)	172, 584, 703, 733, 786, 958
Ksp22I	TGATCA	3 cut(s)	18, 696, 919
Kzo9I	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
LmnI	GCTCC	2 cut(s)	244, 289
Lsp1109I	GCAGC	3 cut(s)	735, 757, 1026
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	4 cut(s)	213, 518, 827, 914
MaeII	ACGT	4 cut(s)	115, 474, 959, 1061
MaeIII	GTNAC	6 cut(s)	76, 554, 671, 881, 905, 973
MalI	GATC	6 cut(s)	20, 576, 698, 780, 834, 921
MboI	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
MboII	GAAGA	4 cut(s)	149, 521, 845, 938
MluCI	AATT	3 cut(s)	244, 709, 767
MlyI	GAGTC	3 cut(s)	57, 189, 359
MmeI	TCCRAC	2 cut(s)	40, 827
Mph1103I	ATGCAT	1 cut(s)	874
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	582, 585
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	3 cut(s)	456, 752, 927
MspR9I	CCNGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
NlaIII	CATG	6 cut(s)	172, 584, 703, 733, 786, 958
NlaIV	GGNNCC	2 cut(s)	285, 595
NmuCI	GTSAC	3 cut(s)	76, 554, 881
NsiI	ATGCAT	1 cut(s)	874
PagI	TCATGA	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	5 cut(s)	63, 422, 442, 716, 943
PkrI	GCNGC	3 cut(s)	747, 750, 1041
PleI	GAGTC	3 cut(s)	56, 189, 358
PpsI	GAGTC	3 cut(s)	56, 189, 358
PspN4I	GGNNCC	2 cut(s)	285, 595
PspPI	GGNCC	2 cut(s)	659, 800
PstI	CTGCAG	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	5 cut(s)	118, 235, 619, 687, 998
RsaNI	GTAC	5 cut(s)	117, 234, 618, 686, 997
RseI	CAYNNNNRTG	2 cut(s)	582, 585
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	3 cut(s)	746, 749, 1040
Sau3AI	GATC	6 cut(s)	18, 574, 696, 778, 832, 919
Sau96I	GGNCC	2 cut(s)	659, 800
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	3 cut(s)	57, 189, 359
ScrFI	CCNGG	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	582, 585
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SpeI	ACTAGT	1 cut(s)	913
Sse9I	AATT	3 cut(s)	244, 709, 767
SspI	AATATT	3 cut(s)	603, 679, 863
SspMI	CTAG	4 cut(s)	213, 518, 827, 914
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	203, 617, 881
TaiI	ACGT	4 cut(s)	118, 477, 962, 1064
TaqI	TCGA	2 cut(s)	303, 993
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	244, 709, 767
TatI	WGTACW	2 cut(s)	233, 617
TfiI	GAWTC	5 cut(s)	63, 422, 442, 716, 943
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	565, 815
TseFI	GTSAC	3 cut(s)	76, 554, 881
TseI	GCWGC	3 cut(s)	745, 748, 1039
Tsp45I	GTSAC	3 cut(s)	76, 554, 881
TspDTI	ATGAA	5 cut(s)	238, 637, 746, 938, 1065
TspRI	CASTG	2 cut(s)	565, 815
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	1064
XspI	CTAG	4 cut(s)	213, 518, 827, 914
ZrmI	AGTACT	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.