RLG00000010230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014708
Physical Location & Seq
Forward (+)
64494816 .. 64496659
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010230

Sequence Viewer

Length: 864 bp
ATGGAGATGGCGAAGTCCCCACACTTGTGTTTCTGTGAGCATATCATAGCAGTGGATGACTCTACTCGAGCCGTTGTTCGCTCCATCAAATTGAGCAATTTGTTATCACCACCACCACCAACAGCAGCAGCAGCTACATTTGAGCACGAAACACATCATGATTCTGAAACCTGTGGTTGGTCACCCTTTCCGTGGGGTTGCTGTCGCTTCGGGTCTCTAATTCTCTTCGCCGGAGAAATTGTTGCTTTTGATCCTAATTCGTGTCCGAAACCGAAATTCAGGTCCCCTAAATTCACACGACCTCGTACACATTATTATCAATTCCCAATTGCGCTGTTGCAGGTGGAGGGTAGACTCTGCTGTCTTGACACTAGAAGCCAGCAATATTATAGTACTGCTCCCAGTTTCATTCTCAGATCGAACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTATTCGACCCCAAAGGTGATGGAGAGTTTGAGGCCAAATGGCTGCCTCTGGAGTCGCCTTCTCCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAACAAGTTTATGTATTGTGCTGGTTGTTGGGGTGACACTATAAAGCTCGTCGATCATCATGGTGGTGGAGGAACCCTAATATTTACCTTTGGCTGTACAAGTGGATGTAAACTGCCGGAAATCCCTCCTGAATTTTGGAATGATCCATGCGTGAGAGCAGTTGGTGCATCTAGGAGATCACAAAGTGTCTACGCTTGTGCTACCGAGTGGAAGAAGCATCATGCAGGTATTTCTTTGCTAGCAGTGATTGCAGAGGAGTGGTCAGATGAAATGGTATTGGTGCTGGATTCAAGTTTAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.07

Weight (kDa)

6.1

Isoelectric Point (pI)

66.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AasI GACNNNNNNGTC 1 cut(s) 360
Acc36I ACCTGC 2 cut(s) 331, 773
AccI GTMKAC 2 cut(s) 352, 747
AclWI GGATC 2 cut(s) 245, 695
AcsI RAATTY 3 cut(s) 275, 290, 689
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 3 cut(s) 307, 394, 655
AfiI CCNNNNNNNGG 2 cut(s) 177, 192
AgsI TTSAA 1 cut(s) 849
AleI CACNNNNGTG 1 cut(s) 25
AluBI AGCT 3 cut(s) 134, 556, 604
AluI AGCT 3 cut(s) 134, 556, 604
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 245, 695
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 4 cut(s) 125, 128, 131, 502
ApoI RAATTY 3 cut(s) 275, 290, 689
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 5 cut(s) 99, 174, 419, 488, 602
AsuNHI GCTAGC 1 cut(s) 796
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 137, 140, 143, 489
BccI CCATC 2 cut(s) 92, 473
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 3 cut(s) 372, 729, 797
BfuAI ACCTGC 2 cut(s) 331, 773
BisI GCNGC 4 cut(s) 126, 129, 132, 503
BlsI GCNGC 4 cut(s) 127, 130, 133, 504
BmcAI AGTACT 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 3 cut(s) 284, 444, 631
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 734, 784
BmtI GCTAGC 1 cut(s) 800
BmuI ACTGGG 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 191, 438
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 192
Bse1I ACTGG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 191, 438
BseGI GGATG 2 cut(s) 61, 668
BseLI CCNNNNNNNGG 2 cut(s) 177, 192
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 2 cut(s) 435, 827
BseXI GCAGC 4 cut(s) 137, 140, 143, 489
BshFI GGCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 3 cut(s) 231, 524, 674
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 177, 192
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 653
Bsp143I GATC 5 cut(s) 250, 416, 610, 700, 734
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 284, 444, 631
BspMI ACCTGC 2 cut(s) 331, 773
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 2 cut(s) 245, 695
BspTNI GGTCTC 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 653
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 191, 438
BssMI GATC 5 cut(s) 250, 416, 610, 700, 734
Bst6I CTCTTC 1 cut(s) 230
BstAPI GCANNNNNTGC 2 cut(s) 722, 806
BstAUI TGTACA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 380, 798
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 180
BstF5I GGATG 2 cut(s) 61, 668
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 5 cut(s) 253, 419, 613, 703, 737
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 5 cut(s) 250, 416, 610, 700, 734
BstMWI GCNNNNNNNGC 4 cut(s) 131, 449, 722, 806
BstPI GGTNACC 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 137, 140, 143, 489
BsuRI GGCC 1 cut(s) 494
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 61, 668
BtsI GCAGTG 2 cut(s) 57, 807
BtsIMutI CAGTG 2 cut(s) 57, 807
BveI ACCTGC 2 cut(s) 331, 773
Cac8I GCNNGC 2 cut(s) 380, 798
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 306, 393, 654
CviAII CATG 4 cut(s) 158, 617, 705, 779
CviQI GTAC 3 cut(s) 306, 393, 654
DdeI CTNAG 1 cut(s) 413
DpnI GATC 5 cut(s) 252, 418, 612, 702, 736
DpnII GATC 5 cut(s) 250, 416, 610, 700, 734
DraIII CACNNNGTG 1 cut(s) 743
DrdI GACNNNNNNGTC 1 cut(s) 360
DseDI GACNNNNNNGTC 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 180
FaeI CATG 4 cut(s) 161, 620, 708, 782
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 157, 616, 704, 778
FblI GTMKAC 2 cut(s) 352, 747
Fnu4HI GCNGC 4 cut(s) 126, 129, 132, 503
FokI GGATG 2 cut(s) 68, 675
Fsp4HI GCNGC 4 cut(s) 126, 129, 132, 503
FspBI CTAG 3 cut(s) 372, 729, 797
GlaI GCGC 1 cut(s) 333
GluI GCNGC 4 cut(s) 126, 129, 132, 503
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 1 cut(s) 494
HapII CCGG 3 cut(s) 231, 524, 674
HhaI GCGC 1 cut(s) 334
Hin1II CATG 4 cut(s) 161, 620, 708, 782
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 5 cut(s) 59, 161, 354, 512, 845
HpaII CCGG 3 cut(s) 231, 524, 674
HphI GGTGA 5 cut(s) 99, 174, 419, 488, 602
Hpy166II GTNNAC 4 cut(s) 308, 353, 668, 748
Hpy188I TCNGA 4 cut(s) 166, 267, 416, 823
Hpy188III TCNNGA 4 cut(s) 158, 365, 509, 686
Hpy8I GTNNAC 4 cut(s) 308, 353, 668, 748
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 1 cut(s) 528
HpyCH4V TGCA 5 cut(s) 340, 458, 725, 782, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 449, 722, 806
HpyF3I CTNAG 1 cut(s) 413
Hsp92II CATG 4 cut(s) 161, 620, 708, 782
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 5 cut(s) 250, 416, 610, 700, 734
LmnI GCTCC 3 cut(s) 86, 403, 448
Lsp1109I GCAGC 4 cut(s) 137, 140, 143, 489
LweI GCATC 2 cut(s) 734, 784
MaeI CTAG 3 cut(s) 372, 729, 797
MaeIII GTNAC 2 cut(s) 180, 590
MalI GATC 5 cut(s) 252, 418, 612, 702, 736
MboI GATC 5 cut(s) 250, 416, 610, 700, 734
MboII GAAGA 2 cut(s) 217, 781
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 147
MlyI GAGTC 3 cut(s) 53, 348, 521
MnlI CCTC 9 cut(s) 312, 340, 433, 456, 484, 516, 620, 693, 805
MslI CAYNNNNRTG 4 cut(s) 25, 50, 618, 621
MspI CCGG 3 cut(s) 231, 524, 674
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 131, 449, 722, 806
NdeII GATC 5 cut(s) 250, 416, 610, 700, 734
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 4 cut(s) 161, 620, 708, 782
NlaIV GGNNCC 3 cut(s) 284, 444, 631
NmuCI GTSAC 2 cut(s) 180, 590
OliI CACNNNNGTG 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 66
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 161, 845
PkrI GCNGC 4 cut(s) 127, 130, 133, 504
PleI GAGTC 3 cut(s) 53, 348, 520
PpsI GAGTC 3 cut(s) 53, 348, 520
PpuMI RGGWCCY 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 284, 444, 631
PspPI GGNCC 1 cut(s) 282
PspPPI RGGWCCY 1 cut(s) 282
PspXI VCTCGAGB 1 cut(s) 66
RsaI GTAC 3 cut(s) 307, 394, 655
RsaNI GTAC 3 cut(s) 306, 393, 654
RseI CAYNNNNRTG 4 cut(s) 25, 50, 618, 621
SatI GCNGC 4 cut(s) 126, 129, 132, 503
Sau3AI GATC 5 cut(s) 250, 416, 610, 700, 734
Sau96I GGNCC 1 cut(s) 282
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 3 cut(s) 53, 348, 521
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 734, 784
Sfr274I CTCGAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 282
SlaI CTCGAG 1 cut(s) 66
SmiMI CAYNNNNRTG 4 cut(s) 25, 50, 618, 621
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SspI AATATT 2 cut(s) 386, 639
SspMI CTAG 3 cut(s) 372, 729, 797
TaqI TCGA 4 cut(s) 67, 419, 465, 609
TatI WGTACW 2 cut(s) 392, 653
TfiI GAWTC 2 cut(s) 161, 845
TscAI CASTG 2 cut(s) 57, 807
TseFI GTSAC 2 cut(s) 180, 590
TseI GCWGC 4 cut(s) 125, 128, 131, 502
Tsp45I GTSAC 2 cut(s) 180, 590
TspDTI ATGAA 2 cut(s) 397, 840
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 2 cut(s) 57, 807
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 3 cut(s) 275, 290, 689
XhoI CTCGAG 1 cut(s) 66
XmiI GTMKAC 2 cut(s) 352, 747
XspI CTAG 3 cut(s) 372, 729, 797
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.