Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014708

Physical Location & Seq

Genomic Coordinates Forward (+)

64411114 .. 64412438

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGACGACGAAGTCCGTGCACTTCTGTTTCTGTGAGCATATCGTAGCAATATTTGACTCTACTCGCGACGTTGTTCGCTCCATCAAATTGAGCGATTTGTTATCACCAGTTCACCACCACCACCAACAGCAACAGCAGCTACGTTTGAGCACGAAACATATCATGATTCTGAAACCGGTGGTTGGTCACCCTTTCCGTGGGGTTGCTGTCGCTTCGGGTCCCAAATTCTCTTTGCCGGCGGCAACTAAGGCGCACGCGACTCCATTTACGGCAAGTCGGTGGAGGGCAGACTACTGTATTGCCACTAGAAGCCAGCAATATTATAGTACTGCTCCCAATTTCATTCTCAGACCGAACTATCACCACTATACCGAGGCTCCTCCTTATTTTGCAGTATTCGACCTCGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCTTCTCCTCCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAACGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCCGGGGTTTACCTCTTTGACGTGAGTCGACCCGAGAAAGGATGGATAGAGTTGCACTCTCCTCTAGCAACCACTCTTCCCTTTGTTAAGGGTTGTTGGGGTGACACTGCAAAGCTCGCCGATCATCATGGTGGTGGAGGAACCCTAATATTTACCTTTGACTGTACAAGAGGATGTAAAGTTAGTGATGGTTTCATCTATTATGGGCCTCAGATAAGTAACAATATTAGCGTACAAGTTTTGATCATGTCCTATAATTTAGATTCTTTGCAAGCCATGAAACCCTTCCTGCAGCTGTCGGAAATCCCTCCTGAATTTCGCAATGATCCATGCGTAAGAGCAGTTGGTCCAAGCCAGTGTTGTCTTGTGCATCTAGGAGATCACAAAGTGTGCCTTATTCTTCACAAATATTTCTATGCATTATACTGTGACACTAATGATTTGGAGGAAGGTTACGAACTAGTTGATCATACCGGCAGAAACAAGGGGATTCTTCATCTCATGACGTTTGAATATCAAGTCACTCCTGACTTGGGCATCGAGTACCGAATTCTCACTACTCGCAACTTAGAATACCATACCAAGCTGCCAAACAATGAATATATATGCAACGTATACCAAGCCTGTCTAACTAAAGCCTTTGTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

45.49

Weight (kDa)

6.48

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00460
rosa_laevigata	RLG00000010210 RLG00000010225 RLG00000010230 RLG00000010234
rosa_multiflora	Rmu_sc0001259.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333290 Rroxscaffold_5G00333440 Rroxscaffold_7G00215820
rosa_rugosa	Rorug03G0300600 Rorug03G0301000 Rorug05G0508700
rosa_samantha	Rh4AG005100 Rh4AG005400 Rh4BG003900 Rh4CG005500 Rh4CG005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccI	GTMKAC	2 cut(s)	580, 1167
AccII	CGCG	2 cut(s)	69, 260
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	3 cut(s)	227, 866, 1101
AdeI	CACNNNGTG	1 cut(s)	940
AfaI	GTAC	4 cut(s)	331, 718, 786, 1097
AfiI	CCNNNNNNNGG	4 cut(s)	185, 200, 590, 1085
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	1064
AhlI	ACTAGT	1 cut(s)	1012
AjiI	CACGTC	1 cut(s)	574
AluBI	AGCT	5 cut(s)	142, 493, 667, 847, 1138
AluI	AGCT	5 cut(s)	142, 493, 667, 847, 1138
Alw21I	GWGCWC	2 cut(s)	24, 155
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	3 cut(s)	429, 552, 758
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	139, 844, 1138
ApoI	RAATTY	3 cut(s)	227, 866, 1101
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AsiGI	ACCGGT	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	221, 758, 899
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	6 cut(s)	99, 107, 182, 356, 425, 665
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	2 cut(s)	221, 899
BaeGI	GKGCMC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	24, 155
BbvI	GCAGC	3 cut(s)	151, 856, 1125
BccI	CCATC	4 cut(s)	92, 410, 588, 734
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	1 cut(s)	35
BclI	TGATCA	2 cut(s)	795, 1018
BcnI	CCSGG	1 cut(s)	556
BcuI	ACTAGT	1 cut(s)	1012
BfaI	CTAG	4 cut(s)	309, 617, 926, 1013
BfmI	CTRYAG	1 cut(s)	842
BisI	GCNGC	4 cut(s)	140, 243, 845, 1139
BlsI	GCNGC	4 cut(s)	141, 244, 846, 1140
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	221, 899
BmeT110I	CYCGRG	1 cut(s)	584
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	221, 758, 899
BmiI	GGNNCC	4 cut(s)	222, 223, 381, 694
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	931, 1098
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	556
BsaJI	CCNNGG	3 cut(s)	199, 375, 555
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 200, 590, 1085
Bse118I	RCCGGY	3 cut(s)	178, 238, 1025
Bse1I	ACTGG	2 cut(s)	110, 907
Bse3DI	GCAATG	1 cut(s)	880
BseDI	CCNNGG	3 cut(s)	199, 375, 555
BseGI	GGATG	2 cut(s)	599, 731
BseLI	CCNNNNNNNGG	4 cut(s)	185, 200, 590, 1085
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	2 cut(s)	364, 776
BseNI	ACTGG	2 cut(s)	110, 907
BseRI	GAGGAG	3 cut(s)	372, 447, 603
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	151, 856, 1125
Bsh1236I	CGCG	2 cut(s)	69, 260
BshFI	GGCC	3 cut(s)	431, 554, 760
BshTI	ACCGGT	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	24, 155
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	5 cut(s)	179, 239, 461, 555, 1026
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	4 cut(s)	185, 200, 590, 1085
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	3 cut(s)	431, 554, 760
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	24, 155
Bsp1407I	TGTACA	1 cut(s)	716
Bsp143I	GATC	5 cut(s)	673, 795, 877, 931, 1018
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	431, 554, 760
BspCNI	CTCAG	2 cut(s)	363, 775
BspFNI	CGCG	2 cut(s)	69, 260
BspHI	TCATGA	2 cut(s)	165, 1053
BspLI	GGNNCC	4 cut(s)	222, 223, 381, 694
BspMAI	CTGCAG	1 cut(s)	846
BspPI	GGATC	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	880
BsrFI	RCCGGY	3 cut(s)	178, 238, 1025
BsrGI	TGTACA	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	110, 907
BssAI	RCCGGY	3 cut(s)	178, 238, 1025
BssECI	CCNNGG	3 cut(s)	199, 375, 555
BssMI	GATC	5 cut(s)	673, 795, 877, 931, 1018
BssNAI	GTATAC	1 cut(s)	1168
Bst1107I	GTATAC	1 cut(s)	1168
Bst4CI	ACNGT	3 cut(s)	299, 716, 980
Bst6I	CTCTTC	1 cut(s)	633
BstAUI	TGTACA	1 cut(s)	716
BstC8I	GCNNGC	5 cut(s)	240, 258, 317, 669, 825
BstDEI	CTNAG	5 cut(s)	249, 350, 532, 762, 1120
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	599, 731
BstFNI	CGCG	2 cut(s)	69, 260
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	5 cut(s)	676, 798, 880, 934, 1021
BstMBI	GATC	5 cut(s)	673, 795, 877, 931, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 251, 668
BstPAI	GACNNNNGTC	1 cut(s)	576
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	2 cut(s)	69, 260
BstV1I	GCAGC	3 cut(s)	151, 856, 1125
BstV2I	GAAGAC	1 cut(s)	444
BstZ17I	GTATAC	1 cut(s)	1168
BsuRI	GGCC	3 cut(s)	431, 554, 760
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	599, 731
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	657, 914
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	5 cut(s)	240, 258, 317, 669, 825
CciI	TCATGA	2 cut(s)	165, 1053
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	3 cut(s)	178, 238, 1025
Cfr13I	GGNCC	3 cut(s)	221, 758, 899
Csp6I	GTAC	4 cut(s)	330, 717, 785, 1096
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	6 cut(s)	166, 680, 799, 829, 882, 1054
CviQI	GTAC	4 cut(s)	330, 717, 785, 1096
DdeI	CTNAG	5 cut(s)	249, 350, 532, 762, 1120
DpnI	GATC	5 cut(s)	675, 797, 879, 933, 1020
DpnII	GATC	5 cut(s)	673, 795, 877, 931, 1018
DraIII	CACNNNGTG	1 cut(s)	940
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	221, 899
Eco88I	CYCGRG	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	1101
EcoT22I	ATGCAT	1 cut(s)	973
FaeI	CATG	6 cut(s)	169, 683, 802, 832, 885, 1057
FalI	AAGNNNNNCTT	2 cut(s)	930, 962
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	6 cut(s)	165, 679, 798, 828, 881, 1053
FbaI	TGATCA	2 cut(s)	795, 1018
FblI	GTMKAC	2 cut(s)	580, 1167
Fnu4HI	GCNGC	4 cut(s)	140, 243, 845, 1139
FokI	GGATG	2 cut(s)	606, 738
Fsp4HI	GCNGC	4 cut(s)	140, 243, 845, 1139
FspBI	CTAG	4 cut(s)	309, 617, 926, 1013
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	4 cut(s)	140, 243, 845, 1139
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	431, 554, 760
HapII	CCGG	5 cut(s)	179, 239, 461, 555, 1026
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	6 cut(s)	169, 683, 802, 832, 885, 1057
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	9 cut(s)	59, 169, 262, 449, 521, 541, 577, 815, 1042
HpaII	CCGG	5 cut(s)	179, 239, 461, 555, 1026
HphI	GGTGA	6 cut(s)	99, 107, 182, 356, 425, 665
Hpy166II	GTNNAC	5 cut(s)	22, 115, 562, 581, 1168
Hpy188I	TCNGA	4 cut(s)	174, 353, 765, 853
Hpy188III	TCNNGA	8 cut(s)	68, 166, 446, 538, 545, 863, 1054, 1079
Hpy8I	GTNNAC	5 cut(s)	22, 115, 562, 581, 1168
Hpy99I	CGWCG	2 cut(s)	13, 74
HpyAV	CCTTC	3 cut(s)	404, 847, 995
HpyCH4III	ACNGT	3 cut(s)	299, 716, 980
HpyCH4IV	ACGT	5 cut(s)	72, 145, 573, 1058, 1164
HpyCH4V	TGCA	9 cut(s)	22, 395, 607, 662, 823, 844, 922, 971, 1161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 251, 668
HpyF3I	CTNAG	5 cut(s)	249, 350, 532, 762, 1120
HpySE526I	ACGT	5 cut(s)	72, 145, 573, 1058, 1164
Hsp92II	CATG	6 cut(s)	169, 683, 802, 832, 885, 1057
HspAI	GCGC	1 cut(s)	254
KflI	GGGWCCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	795, 1018
Kzo9I	GATC	5 cut(s)	673, 795, 877, 931, 1018
LmnI	GCTCC	3 cut(s)	86, 340, 385
Lsp1109I	GCAGC	3 cut(s)	151, 856, 1125
LweI	GCATC	2 cut(s)	931, 1098
MaeI	CTAG	4 cut(s)	309, 617, 926, 1013
MaeII	ACGT	5 cut(s)	72, 145, 573, 1058, 1164
MaeIII	GTNAC	6 cut(s)	188, 653, 770, 980, 1004, 1072
MalI	GATC	5 cut(s)	675, 797, 879, 933, 1020
MboI	GATC	5 cut(s)	673, 795, 877, 931, 1018
MboII	GAAGA	4 cut(s)	444, 620, 944, 1037
MhlI	GDGCHC	2 cut(s)	24, 155
MluCI	AATT	6 cut(s)	89, 227, 340, 808, 866, 1101
MlyI	GAGTC	4 cut(s)	53, 256, 458, 586
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	1 cut(s)	973
MroNI	GCCGGC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	836
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	2 cut(s)	681, 684
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	5 cut(s)	179, 239, 461, 555, 1026
MspR9I	CCNGG	1 cut(s)	556
MvnI	CGCG	2 cut(s)	69, 260
MwoI	GCNNNNNNNGC	3 cut(s)	139, 251, 668
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	5 cut(s)	673, 795, 877, 931, 1018
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	6 cut(s)	169, 683, 802, 832, 885, 1057
NlaIV	GGNNCC	4 cut(s)	222, 223, 381, 694
NmuCI	GTSAC	4 cut(s)	188, 653, 980, 1072
NruI	TCGCGA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	973
PagI	TCATGA	2 cut(s)	165, 1053
PdiI	GCCGGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	5 cut(s)	169, 521, 541, 815, 1042
PflFI	GACNNNGTC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	141, 244, 846, 1140
PleI	GAGTC	4 cut(s)	53, 256, 457, 585
PpsI	GAGTC	4 cut(s)	53, 256, 457, 585
PpuMI	RGGWCCY	1 cut(s)	221
PshAI	GACNNNNGTC	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	221
PspEI	GGTNACC	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	222, 223, 381, 694
PspPI	GGNCC	3 cut(s)	221, 758, 899
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	846
PsyI	GACNNNGTC	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	847
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	4 cut(s)	331, 718, 786, 1097
RsaNI	GTAC	4 cut(s)	330, 717, 785, 1096
RseI	CAYNNNNRTG	2 cut(s)	681, 684
SalI	GTCGAC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	4 cut(s)	140, 243, 845, 1139
Sau3AI	GATC	5 cut(s)	673, 795, 877, 931, 1018
Sau96I	GGNCC	3 cut(s)	221, 758, 899
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	4 cut(s)	53, 256, 458, 586
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	2 cut(s)	24, 155
SfaNI	GCATC	2 cut(s)	931, 1098
SfcI	CTRYAG	1 cut(s)	842
SinI	GGWCC	2 cut(s)	221, 899
SmiMI	CAYNNNNRTG	2 cut(s)	681, 684
SpeI	ACTAGT	1 cut(s)	1012
Sse9I	AATT	6 cut(s)	89, 227, 340, 808, 866, 1101
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	5 cut(s)	54, 323, 702, 778, 962
SspMI	CTAG	4 cut(s)	309, 617, 926, 1013
StyD4I	CCNGG	1 cut(s)	554
TaaI	ACNGT	3 cut(s)	299, 716, 980
TaiI	ACGT	5 cut(s)	75, 148, 576, 1061, 1167
TaqI	TCGA	4 cut(s)	402, 408, 580, 1092
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	6 cut(s)	89, 227, 340, 808, 866, 1101
TatI	WGTACW	2 cut(s)	329, 716
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	5 cut(s)	169, 521, 541, 815, 1042
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	664, 914
TseFI	GTSAC	4 cut(s)	188, 653, 980, 1072
TseI	GCWGC	3 cut(s)	139, 844, 1138
Tsp45I	GTSAC	4 cut(s)	188, 653, 980, 1072
TspDTI	ATGAA	5 cut(s)	334, 736, 845, 1037, 1164
TspGWI	ACGGA	2 cut(s)	7, 188
TspRI	CASTG	2 cut(s)	664, 914
Tth111I	GACNNNGTC	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	221, 899
XapI	RAATTY	3 cut(s)	227, 866, 1101
XmiI	GTMKAC	2 cut(s)	580, 1167
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	4 cut(s)	309, 617, 926, 1013
ZrmI	AGTACT	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.