Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014708

Physical Location & Seq

Genomic Coordinates Reverse (-)

1024912 .. 1042324

Gene Structure 17413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAGCGAGCATCGAGCGGGACAGAGTGTTGCATGAATTGTTGAAATTAACTAGTCCGGAAAAGGATTCGACCCTAATCGAAGCAGGATTGTCTTATCTCTTCACTGTTTCGATGCTGAAACACGTGGAGGTGGAGGGCAGACTCTACTGTCTTGACACTAGAAGCCAGCAATATTATAATACTGCTCCCAATTTCATTCTCAGACCGAACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTGTTCGACTCCAAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCACCTCAGGCTATACTCTACGATGGGAAATCCCACAAGCTGAACGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTTGTCTGGAATCAAGATAAGGCCGGGGTTTACCTCTTTGACGTGAGCTTACCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

148

Amino Acids

17.0

Weight (kDa)

5.7

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00460
rosa_laevigata	RLG00000010210 RLG00000010225 RLG00000010230 RLG00000010234
rosa_multiflora	Rmu_sc0001259.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333290 Rroxscaffold_5G00333440 Rroxscaffold_7G00215820
rosa_rugosa	Rorug03G0300600 Rorug03G0301000 Rorug05G0508700
rosa_samantha	Rh4AG005100 Rh4AG005400 Rh4BG003900 Rh4CG005500 Rh4CG005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AasI	GACNNNNNNGTC	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	1 cut(s)	19
AcvI	CACGTG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	46
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	427
AluBI	AGCT	2 cut(s)	346, 432
AluI	AGCT	2 cut(s)	346, 432
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	2 cut(s)	282, 405
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	209, 278
AxyI	CCTNAGG	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	263, 323
BcnI	CCSGG	1 cut(s)	409
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	2 cut(s)	54, 162
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	409
BmgBI	CACGTC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	21, 105
BpmI	CTGGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	228, 408
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse21I	CCTNAGG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	228, 408
BseMII	CTCAG	2 cut(s)	217, 326
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	284, 407
BsiSI	CCGG	2 cut(s)	59, 408
BslFI	GGGAC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	284, 407
Bsp13I	TCCGGA	1 cut(s)	58
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	2 cut(s)	284, 407
BspCNI	CTCAG	2 cut(s)	216, 325
BspEI	TCCGGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	228, 408
Bst4CI	ACNGT	2 cut(s)	109, 152
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	10, 170
BstDEI	CTNAG	2 cut(s)	203, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	284, 407
BtrI	CACGTC	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	105, 255
Cac8I	GCNNGC	2 cut(s)	10, 170
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	7 cut(s)	168, 233, 284, 317, 346, 407, 432
CviKI_1	RGCY	7 cut(s)	168, 233, 284, 317, 346, 407, 432
DdeI	CTNAG	2 cut(s)	203, 312
DrdI	GACNNNNNNGTC	1 cut(s)	150
DseDI	GACNNNNNNGTC	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	38
FaiI	YATR	5 cut(s)	36, 180, 225, 320, 359
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	54, 162
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	284, 407
HapII	CCGG	2 cut(s)	59, 408
Hin1II	CATG	1 cut(s)	38
HinfI	GANTC	6 cut(s)	68, 144, 257, 302, 374, 394
HpaII	CCGG	2 cut(s)	59, 408
HphI	GGTGA	2 cut(s)	209, 278
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	5 cut(s)	59, 155, 299, 391, 398
Hpy8I	GTNNAC	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	109, 152
HpyCH4IV	ACGT	2 cut(s)	126, 426
HpyCH4V	TGCA	2 cut(s)	34, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	203, 312
HpySE526I	ACGT	2 cut(s)	126, 426
Hsp92II	CATG	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	193, 238
LpnPI	CCDG	8 cut(s)	72, 72, 182, 252, 284, 299, 376, 421
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	21, 105
MaeI	CTAG	2 cut(s)	54, 162
MaeII	ACGT	2 cut(s)	126, 426
MbiI	CCGCTC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	3 cut(s)	38, 47, 193
MlyI	GAGTC	3 cut(s)	138, 251, 311
MnlI	CCTC	8 cut(s)	124, 130, 223, 246, 274, 306, 321, 428
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	1 cut(s)	50
MspI	CCGG	2 cut(s)	59, 408
MspR9I	CCNGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	409
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	68, 374, 394
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	138, 251, 310
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	138, 251, 310
Ppu21I	YACGTR	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	3 cut(s)	138, 251, 311
ScrFI	CCNGG	1 cut(s)	409
SetI	ASST	8 cut(s)	129, 135, 268, 313, 348, 420, 429, 434
SfaNI	GCATC	2 cut(s)	21, 105
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	3 cut(s)	38, 47, 193
SsiI	CCGC	1 cut(s)	19
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	2 cut(s)	54, 162
StyD4I	CCNGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	109, 152
TaiI	ACGT	2 cut(s)	129, 429
TaqI	TCGA	5 cut(s)	15, 71, 81, 113, 255
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	38, 47, 193
TfiI	GAWTC	3 cut(s)	68, 374, 394
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	2 cut(s)	112, 255
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	51, 187
TspRI	CASTG	2 cut(s)	112, 255
XspI	CTAG	2 cut(s)	54, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.