Rh4BG003900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014708
Physical Location & Seq
Reverse (-)
686896 .. 687372
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG003900.1

Sequence Viewer

Length: 477 bp
ATGTCCCCTAAATTCACACGACCACGTCAACATCATTATCAATTCCCAATTTCGCTGTTGGAGGTGGAGGGCAGACTCTATTGTCTTGATACTAGAAGCCAGCAATATTATAGTACTGCTCCCAATTTCATTCTCAGACTGCACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTATTAGACCCCGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCTCCTCCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAACGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTCGAATCAAGATAGGGGTTACCGCTTTGACGTGAGCCGACCCGAGAAAGGGTGGATAGAGTTGCACCCTCCTCTAGCAACCACTCTTCCCTTTGTTAAGGGTAGTTGGGTGACACTGCAAAGTTCGCCGATCATCATGGTGGTGGAGGAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.33

Weight (kDa)

5.77

Isoelectric Point (pI)

75.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 7 - 139 2.6e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
AciI CCGC 1 cut(s) 343
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 368, 369
AjiI CACGTC 2 cut(s) 26, 352
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AsuHPI GGTGA 3 cut(s) 140, 209, 442
AvaI CYCGRG 1 cut(s) 362
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 93, 395
BmcAI AGTACT 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 362
BmgBI CACGTC 2 cut(s) 26, 352
BmiI GGNNCC 2 cut(s) 165, 471
BpmI CTGGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 369
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 368, 369
BseMII CTCAG 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 156, 231, 381
BsgI GTGCAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 368, 369
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 165, 471
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 134, 316
BstEII GGTNACC 1 cut(s) 338
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 2 cut(s) 170, 445
BstPI GGTNACC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 215
BtrI CACGTC 2 cut(s) 26, 352
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 457
CviJI RGCY 6 cut(s) 99, 164, 215, 248, 277, 357
CviKI_1 RGCY 6 cut(s) 99, 164, 215, 248, 277, 357
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 134, 316
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
FaeI CATG 1 cut(s) 460
FaiI YATR 5 cut(s) 111, 156, 251, 290, 458
FatI CATG 1 cut(s) 456
FspBI CTAG 2 cut(s) 93, 395
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 460
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 4 cut(s) 75, 233, 305, 325
HpaII CCGG 1 cut(s) 245
HphI GGTGA 3 cut(s) 140, 209, 442
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 4 cut(s) 86, 230, 322, 329
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 25, 351
HpyCH4V TGCA 4 cut(s) 142, 179, 385, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 445
HpyF3I CTNAG 2 cut(s) 134, 316
HpySE526I ACGT 2 cut(s) 25, 351
Hsp92II CATG 1 cut(s) 460
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 124, 169
LpnPI CCDG 4 cut(s) 113, 183, 215, 258
MaeI CTAG 2 cut(s) 93, 395
MaeII ACGT 2 cut(s) 25, 351
MaeIII GTNAC 2 cut(s) 338, 430
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 1 cut(s) 398
MluCI AATT 4 cut(s) 11, 41, 48, 124
MlyI GAGTC 2 cut(s) 69, 242
MmeI TCCRAC 1 cut(s) 39
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 2 cut(s) 458, 461
MspI CCGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 170, 445
NdeII GATC 1 cut(s) 450
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 2 cut(s) 165, 471
NmuCI GTSAC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 305, 325
PflFI GACNNNGTC 1 cut(s) 24
PleI GAGTC 2 cut(s) 69, 241
PpsI GAGTC 2 cut(s) 69, 241
PspEI GGTNACC 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 165, 471
PsyI GACNNNGTC 1 cut(s) 24
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 2 cut(s) 458, 461
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 2 cut(s) 69, 242
SetI ASST 5 cut(s) 28, 66, 199, 279, 354
SmiMI CAYNNNNRTG 2 cut(s) 458, 461
Sse9I AATT 4 cut(s) 11, 41, 48, 124
SsiI CCGC 1 cut(s) 343
SspI AATATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 93, 395
TaiI ACGT 2 cut(s) 28, 354
TaqI TCGA 1 cut(s) 323
TasI AATT 4 cut(s) 11, 41, 48, 124
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 2 cut(s) 305, 325
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 24
XapI RAATTY 1 cut(s) 11
XspI CTAG 2 cut(s) 93, 395
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.