RLG00000011400

Electron transfer DM13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014477
Physical Location & Seq
Reverse (-)
9142297 .. 9145011
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011400

Sequence Viewer

Length: 2715 bp
ATGCCTCGCAAGCCCACCGCCACCATCTTCCTAGGGTTTCTCCTCCTTACATTCTGCCATGCCGATCCGGGTTCCAATTGCCCCAAAACCAGTCCTCTCGTCAACTTGGAATCCCAATTCAAAATGCTCCAGCACCAGCTCAGAGGCTCCGTTAAGATACTTGACGATTGCTCCTTCCAGGTTTCCAATTTCGACATGCTCTCCGGCTCCGACGTCCACTGGTGGGGCGCCGTCGCCCCCGATTTCAATAATCTCACCGCCGGCTTCGTAATCTCCGACCAGAAGCTCAATGAGACGTACAAAAGCGCGAGCTTCACTGTGCGCCTGAGGGACAATGTCACCTGGGATCAGATCCAAGTCCTCGCCGTCTGGGACCTCCCCACCTCCTCCGACTTCGGTCACATCGTGCTCCGGGATGTAGTAAACAGATCGTCCGGCAGCTCCGATTTGGCTCCTTCTCCGTCGCCGGCGAGCGATTCAGGGAATGGGACCGGTCGGGTTCACACTGAGCCGACTATGTTGGTGAATTGCAAGAGTTTGTCCGACGATTTTAGGGTTAGATGGACACTGCGTCCTGAGGAGAATGTGATTGACATTGGGCTGGAGGCTGCCACCGGGTCGACGAATTACATGGCCTTCGGATGGGCCCGCCCGAATATCACACACCAGTTTATGCTCGGAGCTGACGTGGCCGTCGCCGGATTCAAGGAGGACGGAATGCCGTTTGTGGATGATTTTTACATCACAAAGTACAGCGAGTGCACCGTGTACAAGGACGGCTCCGTCAAAGGGGTGTGCCCCGATACAAGATACGAAGGGACGGCCCCGAATGACTTGGTGAACAATACCAAATTGGTTTACGGCCACCGGAGGGACGCCGTGTCGTTTATTAGGTACCAGAGGCCGTTGGAATCAGCTGATAAAAAGTATGATTTGGCGGTGAAGCATACCGAGAAAAGGACGGTGATTTGGGCCGTGGGGCCGATCAGGCCACCGGATACTCTTCAGCCTTACTATCTTCCCCAAAACCATGGGGGACCCCAGGATGTGGTTTATGGCCATTTGGAGCTGAATGTGTCTGAGCATGTGGATGACTGTTATGGTCCTATAGAGGCCGATGACAAGGAGGATCAGCACCTCATTATTGCGGATGCAAAGGCCCCGCTTGTGGTTACTTCCGGGCAGGCAGTGCATTATCCAGACCCTCCAAACCCTTCAAAGGTTCTTTACATTAACAAGAAAGAGGCTCCGGTGTTGAGAGTCGAAAGAGGGGTGCCGGTCACGTTTTCAATACAAGCTGGGCATGATGTTGCTCTCTACATTACTTCAGATCCTCTTGGTGGGAATGCTACACTGAGGAATGCAAGCGAGACTGTTTATGCTGGAGGATCGGAAGCTCAAGGAGTTCAAGCCAGTCCCAAGGAGTTAATTTGGGCACCAGACAGGAATACCCCAGACCTAGTGTACTATCAATCTCTTTATGACCAGAAAATGGGATGGAAGGTACAGGTGGTTGATGGGGGTCTGTCAGATATGTATAATAACAGTGTGATTTTGGATGATCAGCAAGTTACCTTATTTTGGACACTGGCACATGATTCTATATCTATTGCAGTCCGGGGTGAGAAGAAAAGTGGTTTCGTGGCAATAGGATTTGGTAGGGGAATGGTGAACAGCTATGCTTATGTGGGTTGGATTGATAATATTGGCAAAGGGCGGGTAAATACTTACTGGATTGATGGAAAGGACGCCTCGAGTGTGCATCCAACACATGAGAATTTGACATATGTGAGGTGCAGGTCAGAAAATGGGATCATTACGTTCGAGTTCACTCGTCCTTTGAAACCATCATGTGGTAAGAGTGATAAGCCTGAGTGTAAAAACATAATTGATCCAACTACTCCTCTTAAAATTATATGGGCAATGGGTGCTACATGGACCGATGATCATCTTAGTGATCAAAATATGCATTTTGCTACCAGCAGTAGGCCTATAAGGGTGCTGCTTATGCGTGGTTCTGCAGAGGCAGAGCAGGATTTACAGCCAGTATTAGCAGTGCATGGATTTATGATGTTTCTCGCTTGGGCTATCTTGCTTCCTGGTGGAATACTGGCGGCTAGATACTTAAAACATGTTAAGGGTGATGGTTGGTACCGGATTCATGTATACTTGCAGTACTCAGGTTTGGTAATCGTTCTACTTGCCCTTCTTTTTGCCGTTGCTGAGCTCCGTGGTTTCTTTTTCGGCTCATTACATGTTAAATTTGGAACTACGGCTATATTTTTGGTTTGTATGCAACCAGTGAATGCATACCTAAGGCCAAAGAGACCAAATAATGGAGAGCAGGTTTCCTCTAAAAGGCTTCTATGGGAGTATCTTCATGTGATCGGGGGCAGATCTGCCATTGTCGTAGGTTTTGGAGCACTTTTCACAGGACTGAAGCATTTAGGTGATAGATATGGCGGCGAAAATGTTGATGGACTAAATTTAGCTTTGATAGTTTGGTTCTTGATCTGTGCATTGATAGTAATATATCTGGAATACTATGAAAGGCAAAGAAGGAGGAATAGAAGTATTGGCAGAAGCAATTGGGTGCTGGGGAACCTTGAGGAGGATGACTCTGTTGATTTGTTGAGCCCAAATGGAATACATTCAGAGAAAGAATCACATACATCAGGAAGAATGGAAGTTCAATTAGAGCCTCTGAACAGATAG

Protein Analysis

905

Amino Acids

100.65

Weight (kDa)

6.09

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DM13 PF10517 39 - 136 5.3e-15 Electron transfer DM13
DOMON PF03351 182 - 327 8.9e-12 DOMON domain
At5g54830 PF25489 381 - 506 1.1e-69 At5g54830-like domain
DOMON PF03351 520 - 643 4e-25 DOMON domain
Cytochrom_C_asm PF01578 683 - 850 6.5e-06 Cytochrome C assembly protein
Cytochrom_B561 PF03188 686 - 814 4.9e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54830
malus_domestica MD08G1058600.v1.1 MD15G1037900.v1.1
prunus_persica Prupe.1G391800_v2.0.a1
pyrus_communis pycom08g04850 pycom15g03510
rosa_chinensis RchiOBHm_Chr6g0299641
rosa_laevigata RLG00000011400
rosa_multiflora Rmu_co8233929.1_g000001 Rmu_co8458799.1_g000001 Rmu_sc0002895.1_g000005
rosa_roxburghii Rroxscaffold_7G00168480
rosa_rugosa Rorug06G0291300
rosa_samantha Rh6BG410500 Rh6CG416200 Rh6DG403400
rosa_wichuraiana Rw6G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 692, 782
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 2 cut(s) 1788, 2335
Acc65I GGTACC 2 cut(s) 894, 2151
AccB1I GGYRCC 5 cut(s) 227, 894, 1273, 1435, 2151
AccB7I CCANNNNNTGG 4 cut(s) 1048, 1492, 1853, 2336
AccI GTMKAC 2 cut(s) 620, 2166
AccII CGCG 1 cut(s) 308
AciI CCGC 9 cut(s) 18, 258, 649, 938, 1148, 1163, 1717, 2114, 2463
AclWI GGATC 8 cut(s) 59, 346, 354, 1137, 1325, 1396, 1820, 1886
AcoI YGGCCR 3 cut(s) 690, 862, 1057
AcsI RAATTY 3 cut(s) 1777, 2261, 2485
AcuI CTGAAG 3 cut(s) 989, 1311, 2459
AcyI GRCGYC 4 cut(s) 213, 228, 876, 1749
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 8 cut(s) 299, 752, 770, 896, 1466, 1506, 2153, 2177
AflIII ACRYGT 2 cut(s) 2131, 2254
AgeI ACCGGT 1 cut(s) 491
AgsI TTSAA 8 cut(s) 121, 247, 706, 1218, 1290, 1409, 1843, 2693
AhdI GACNNNNNGTC 2 cut(s) 570, 880
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 4 cut(s) 177, 341, 1041, 2098
Alw21I GWGCWC 4 cut(s) 411, 764, 2229, 2425
Alw26I GTCTC 3 cut(s) 287, 1364, 2320
Alw44I GTGCAC 1 cut(s) 760
AlwI GGATC 8 cut(s) 59, 346, 354, 1137, 1325, 1396, 1820, 1886
Ama87I CYCGRG 1 cut(s) 1753
ApaI GGGCCC 1 cut(s) 649
ApaLI GTGCAC 1 cut(s) 760
ApeKI GCWGC 3 cut(s) 438, 608, 2002
ApoI RAATTY 3 cut(s) 1777, 2261, 2485
AsiGI ACCGGT 1 cut(s) 491
Asp700I GAANNNNTTC 1 cut(s) 2650
Asp718I GGTACC 2 cut(s) 894, 2151
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 3 cut(s) 230, 308, 324
AsuC2I CCSGG 5 cut(s) 69, 413, 616, 1180, 1619
AvaI CYCGRG 1 cut(s) 1753
AvaII GGWCC 5 cut(s) 373, 489, 1037, 1103, 1938
AvrII CCTAGG 1 cut(s) 31
AxyI CCTNAGG 3 cut(s) 326, 576, 2315
BaeGI GKGCMC 4 cut(s) 649, 764, 800, 1438
BalI TGGCCA 1 cut(s) 1059
BanI GGYRCC 5 cut(s) 227, 894, 1273, 1435, 2151
BanII GRGCYC 3 cut(s) 649, 2229, 2639
Bbv12I GWGCWC 4 cut(s) 411, 764, 2229, 2425
BbvI GCAGC 3 cut(s) 450, 595, 1989
BccI CCATC 9 cut(s) 32, 555, 636, 1491, 1511, 1733, 1855, 2138, 2471
BciT130I CCWGG 4 cut(s) 179, 343, 1043, 2100
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 3 cut(s) 1561, 1945, 1957
BcnI CCSGG 5 cut(s) 69, 413, 616, 1180, 1619
BcoDI GTCTC 3 cut(s) 287, 1364, 2320
BfaI CTAG 3 cut(s) 32, 1460, 2118
BfmI CTRYAG 2 cut(s) 1107, 2019
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 2 cut(s) 1788, 2335
BfuI GTATCC 1 cut(s) 991
BglI GCCNNNNNGGC 1 cut(s) 988
BglII AGATCT 1 cut(s) 2396
BisI GCNGC 5 cut(s) 439, 609, 2003, 2115, 2464
BlnI CCTAGG 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 2223
BlsI GCNGC 5 cut(s) 440, 610, 2004, 2116, 2465
BmcAI AGTACT 1 cut(s) 2177
Bme1390I CCNGG 9 cut(s) 69, 179, 343, 413, 616, 1043, 1180, 1619, 2100
Bme18I GGWCC 5 cut(s) 373, 489, 1037, 1103, 1938
BmeRI GACNNNNNGTC 2 cut(s) 570, 880
BmeT110I CYCGRG 1 cut(s) 1753
BmgBI CACGTC 1 cut(s) 688
BmrFI CCNGG 9 cut(s) 69, 179, 343, 413, 616, 1043, 1180, 1619, 2100
BmsI GCATC 2 cut(s) 1141, 1771
BoxI GACNNNNGTC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 2603, 2635
BpmI CTGGAG 3 cut(s) 113, 623, 1404
Bpu1102I GCTNAGC 1 cut(s) 2223
BpuEI CTTGAG 2 cut(s) 1383, 2627
BpuMI CCSGG 5 cut(s) 69, 413, 616, 1180, 1619
BsaBI GATNNNNATC 1 cut(s) 1947
BsaHI GRCGYC 4 cut(s) 213, 228, 876, 1749
BsaI GGTCTC 1 cut(s) 2320
BsaJI CCNNGG 8 cut(s) 31, 342, 975, 1030, 1041, 1419, 1618, 2230
BsaWI WCCGGW 5 cut(s) 491, 867, 994, 1249, 2154
BsaXI ACNNNNNCTCC 8 cut(s) 155, 185, 185, 215, 672, 702, 2331, 2361
Bse118I RCCGGY 4 cut(s) 260, 466, 491, 1276
Bse1I ACTGG 9 cut(s) 90, 224, 667, 1413, 1593, 1736, 2045, 2115, 2300
Bse21I CCTNAGG 3 cut(s) 326, 576, 2315
Bse3DI GCAATG 1 cut(s) 1929
Bse8I GATNNNNATC 1 cut(s) 1947
BseBI CCWGG 4 cut(s) 179, 343, 1043, 2100
BseDI CCNNGG 8 cut(s) 31, 342, 975, 1030, 1041, 1419, 1618, 2230
BseJI GATNNNNATC 1 cut(s) 1947
BseMI GCAATG 1 cut(s) 1929
BseMII CTCAG 9 cut(s) 154, 317, 498, 567, 1071, 1346, 1863, 2193, 2214
BseNI ACTGG 9 cut(s) 90, 224, 667, 1413, 1593, 1736, 2045, 2115, 2300
BseRI GAGGAG 5 cut(s) 32, 376, 593, 1893, 2624
BseSI GKGCMC 4 cut(s) 649, 764, 800, 1438
BseXI GCAGC 3 cut(s) 450, 595, 1989
BseYI CCCAGC 2 cut(s) 1298, 2596
BsgI GTGCAG 1 cut(s) 1816
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 496
BshNI GGYRCC 5 cut(s) 227, 894, 1273, 1435, 2151
BshTI ACCGGT 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 496
BsiHKAI GWGCWC 4 cut(s) 411, 764, 2229, 2425
BsiHKCI CYCGRG 1 cut(s) 1753
BslFI GGGAC 7 cut(s) 344, 386, 502, 832, 887, 1050, 1401
BsmAI GTCTC 3 cut(s) 287, 1364, 2320
BsmBI CGTCTC 1 cut(s) 287
BsmFI GGGAC 7 cut(s) 344, 386, 502, 832, 887, 1050, 1401
BsmI GAATGC 4 cut(s) 723, 1351, 1366, 2311
Bso31I GGTCTC 1 cut(s) 2320
BsoBI CYCGRG 1 cut(s) 1753
Bsp120I GGGCCC 1 cut(s) 645
Bsp1286I GDGCHC 8 cut(s) 411, 649, 764, 800, 1438, 2229, 2425, 2639
Bsp1407I TGTACA 1 cut(s) 768
Bsp1720I GCTNAGC 1 cut(s) 2223
Bsp19I CCATGG 1 cut(s) 1030
BspACI CCGC 9 cut(s) 18, 258, 649, 938, 1148, 1163, 1717, 2114, 2463
BspCNI CTCAG 9 cut(s) 153, 318, 499, 568, 1072, 1347, 1864, 2192, 2215
BspFNI CGCG 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 2023
BspMI ACCTGC 2 cut(s) 1788, 2335
BspPI GGATC 8 cut(s) 59, 346, 354, 1137, 1325, 1396, 1820, 1886
BspT107I GGYRCC 5 cut(s) 227, 894, 1273, 1435, 2151
BspTNI GGTCTC 1 cut(s) 2320
BsrDI GCAATG 1 cut(s) 1929
BsrFI RCCGGY 4 cut(s) 260, 466, 491, 1276
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 9 cut(s) 90, 224, 667, 1413, 1593, 1736, 2045, 2115, 2300
BssAI RCCGGY 4 cut(s) 260, 466, 491, 1276
BssECI CCNNGG 8 cut(s) 31, 342, 975, 1030, 1041, 1419, 1618, 2230
BssNAI GTATAC 1 cut(s) 2167
BssNI GRCGYC 4 cut(s) 213, 228, 876, 1749
BssT1I CCWWGG 3 cut(s) 31, 1030, 1419
Bst1107I GTATAC 1 cut(s) 2167
Bst2UI CCWGG 4 cut(s) 179, 343, 1043, 2100
Bst4CI ACNGT 6 cut(s) 319, 766, 964, 1097, 1375, 1547
Bst6I CTCTTC 1 cut(s) 1008
BstACI GRCGYC 4 cut(s) 213, 228, 876, 1749
BstAPI GCANNNNNTGC 2 cut(s) 1189, 1928
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 8 cut(s) 11, 262, 310, 468, 472, 649, 1185, 1366
BstDSI CCRYGG 3 cut(s) 975, 1030, 2230
BstENI CCTNNNNNAGG 2 cut(s) 2356, 2609
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 3 cut(s) 230, 308, 324
BstMAI GTCTC 3 cut(s) 287, 1364, 2320
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 6 cut(s) 10, 689, 988, 1189, 1928, 2008
BstNI CCWGG 4 cut(s) 179, 343, 1043, 2100
BstNSI RCATGY 4 cut(s) 199, 1088, 2135, 2258
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 9 cut(s) 67, 177, 341, 411, 614, 1041, 1178, 1617, 2098
BstSFI CTRYAG 2 cut(s) 1107, 2019
BstSLI GKGCMC 4 cut(s) 649, 764, 800, 1438
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 3 cut(s) 450, 595, 1989
BstX2I RGATCY 3 cut(s) 351, 1330, 2396
BstXI CCANNNNNNTGG 1 cut(s) 1031
BstYI RGATCY 3 cut(s) 351, 1330, 2396
BstZ17I GTATAC 1 cut(s) 2167
Bsu36I CCTNAGG 3 cut(s) 326, 576, 2315
BsuI GTATCC 1 cut(s) 991
BtgI CCRYGG 3 cut(s) 975, 1030, 2230
BtrI CACGTC 1 cut(s) 688
BtsI GCAGTG 3 cut(s) 566, 1194, 2061
BveI ACCTGC 2 cut(s) 1788, 2335
Cac8I GCNNGC 8 cut(s) 11, 262, 310, 468, 472, 649, 1185, 1366
CfoI GCGC 3 cut(s) 230, 308, 324
Cfr10I RCCGGY 4 cut(s) 260, 466, 491, 1276
CseI GACGC 3 cut(s) 560, 884, 1757
Csp6I GTAC 8 cut(s) 298, 751, 769, 895, 1465, 1505, 2152, 2176
CspAI ACCGGT 1 cut(s) 491
CviQI GTAC 8 cut(s) 298, 751, 769, 895, 1465, 1505, 2152, 2176
DinI GGCGCC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 406
DrdI GACNNNNNNGTC 2 cut(s) 692, 782
DriI GACNNNNNGTC 2 cut(s) 570, 880
DseDI GACNNNNNNGTC 2 cut(s) 692, 782
EaeI YGGCCR 3 cut(s) 690, 862, 1057
Eam1104I CTCTTC 1 cut(s) 1008
Eam1105I GACNNNNNGTC 2 cut(s) 570, 880
EarI CTCTTC 1 cut(s) 1008
Ecl136II GAGCTC 1 cut(s) 2227
Eco130I CCWWGG 3 cut(s) 31, 1030, 1419
Eco147I AGGCCT 1 cut(s) 1990
Eco24I GRGCYC 3 cut(s) 649, 2229, 2639
Eco31I GGTCTC 1 cut(s) 2320
Eco47I GGWCC 5 cut(s) 373, 489, 1037, 1103, 1938
Eco53kI GAGCTC 1 cut(s) 2227
Eco57I CTGAAG 3 cut(s) 989, 1311, 2459
Eco81I CCTNAGG 3 cut(s) 326, 576, 2315
Eco88I CYCGRG 1 cut(s) 1753
EcoICRI GAGCTC 1 cut(s) 2227
EcoNI CCTNNNNNAGG 2 cut(s) 2356, 2609
EcoO109I RGGNCCY 3 cut(s) 373, 1037, 1159
EcoRII CCWGG 4 cut(s) 177, 341, 1041, 2098
EcoT14I CCWWGG 3 cut(s) 31, 1030, 1419
EcoT22I ATGCAT 2 cut(s) 1971, 2311
EcoT38I GRGCYC 3 cut(s) 649, 2229, 2639
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 3 cut(s) 31, 1030, 1419
Esp3I CGTCTC 1 cut(s) 287
FaqI GGGAC 7 cut(s) 344, 386, 502, 832, 887, 1050, 1401
FauI CCCGC 3 cut(s) 656, 1170, 1710
FauNDI CATATG 1 cut(s) 1786
FbaI TGATCA 3 cut(s) 1561, 1945, 1957
FblI GTMKAC 2 cut(s) 620, 2166
Fnu4HI GCNGC 5 cut(s) 439, 609, 2003, 2115, 2464
FriOI GRGCYC 3 cut(s) 649, 2229, 2639
Fsp4HI GCNGC 5 cut(s) 439, 609, 2003, 2115, 2464
FspBI CTAG 3 cut(s) 32, 1460, 2118
GlaI GCGC 3 cut(s) 229, 307, 323
GluI GCNGC 5 cut(s) 439, 609, 2003, 2115, 2464
GsaI CCCAGC 2 cut(s) 1302, 2600
GsuI CTGGAG 3 cut(s) 113, 623, 1404
HaeII RGCGCY 1 cut(s) 231
HgaI GACGC 3 cut(s) 560, 884, 1757
HhaI GCGC 3 cut(s) 230, 308, 324
Hin1I GRCGYC 4 cut(s) 213, 228, 876, 1749
Hin6I GCGC 3 cut(s) 228, 306, 322
HinP1I GCGC 3 cut(s) 228, 306, 322
HincII GTYRAC 2 cut(s) 103, 621
HindII GTYRAC 2 cut(s) 103, 621
HinfI GANTC 9 cut(s) 110, 476, 702, 911, 1260, 1598, 2158, 2618, 2663
Hpy188III TCNNGA 5 cut(s) 575, 1199, 2509, 2537, 2676
Hpy99I CGWCG 6 cut(s) 215, 236, 466, 548, 625, 698
HpyAV CCTTC 8 cut(s) 184, 465, 646, 809, 1224, 1495, 2216, 2553
HpyCH4III ACNGT 6 cut(s) 319, 766, 964, 1097, 1375, 1547
HpyCH4IV ACGT 5 cut(s) 213, 296, 687, 1283, 1820
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 689, 988, 1189, 1928, 2008
HpySE526I ACGT 5 cut(s) 213, 296, 687, 1283, 1820
Hsp92I GRCGYC 4 cut(s) 213, 228, 876, 1749
HspAI GCGC 3 cut(s) 228, 306, 322
KasI GGCGCC 1 cut(s) 227
KflI GGGWCCC 1 cut(s) 1037
KpnI GGTACC 2 cut(s) 898, 2155
KroI GCCGGC 2 cut(s) 260, 466
KroNI GCCGGC 2 cut(s) 262, 468
Ksp22I TGATCA 3 cut(s) 1561, 1945, 1957
Lsp1109I GCAGC 3 cut(s) 450, 595, 1989
LweI GCATC 2 cut(s) 1141, 1771
MaeI CTAG 3 cut(s) 32, 1460, 2118
MaeII ACGT 5 cut(s) 213, 296, 687, 1283, 1820
MaeIII GTNAC 5 cut(s) 337, 398, 1171, 1279, 1570
MboII GAAGA 6 cut(s) 19, 995, 1010, 1639, 2369, 2691
MfeI CAATTG 2 cut(s) 76, 2587
MflI RGATCY 3 cut(s) 351, 1330, 2396
MhlI GDGCHC 8 cut(s) 411, 649, 764, 800, 1438, 2229, 2425, 2639
MlsI TGGCCA 1 cut(s) 1059
MluNI TGGCCA 1 cut(s) 1059
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 2 cut(s) 1269, 2612
MmeI TCCRAC 8 cut(s) 234, 300, 414, 567, 888, 1673, 1790, 1919
Mox20I TGGCCA 1 cut(s) 1059
Mph1103I ATGCAT 2 cut(s) 1971, 2311
MreI CGCCGGCG 1 cut(s) 466
MroNI GCCGGC 2 cut(s) 260, 466
MroXI GAANNNNTTC 1 cut(s) 2650
MscI TGGCCA 1 cut(s) 1059
MseI TTAA 7 cut(s) 153, 1233, 1427, 1908, 2126, 2136, 2259
MslI CAYNNNNRTG 3 cut(s) 1089, 1953, 2448
Msp20I TGGCCA 1 cut(s) 1059
MspA1I CMGCKG 1 cut(s) 917
MspR9I CCNGG 9 cut(s) 69, 179, 343, 413, 616, 1043, 1180, 1619, 2100
MunI CAATTG 2 cut(s) 76, 2587
Mva1269I GAATGC 4 cut(s) 723, 1351, 1366, 2311
MvaI CCWGG 4 cut(s) 179, 343, 1043, 2100
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 10, 689, 988, 1189, 1928, 2008
NaeI GCCGGC 2 cut(s) 262, 468
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 5 cut(s) 69, 413, 616, 1180, 1619
NcoI CCATGG 1 cut(s) 1030
NdeI CATATG 1 cut(s) 1786
NgoMIV GCCGGC 2 cut(s) 260, 466
NmuCI GTSAC 3 cut(s) 337, 398, 1279
NsiI ATGCAT 2 cut(s) 1971, 2311
NspI RCATGY 4 cut(s) 199, 1088, 2135, 2258
PaeR7I CTCGAG 1 cut(s) 1753
PceI AGGCCT 1 cut(s) 1990
PciI ACATGT 2 cut(s) 2131, 2254
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 402, 684
PctI GAATGC 4 cut(s) 723, 1351, 1366, 2311
PdiI GCCGGC 2 cut(s) 262, 468
PdmI GAANNNNTTC 1 cut(s) 2650
PfeI GAWTC 7 cut(s) 110, 476, 702, 911, 1598, 2158, 2663
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 4 cut(s) 1048, 1492, 1853, 2336
PfoI TCCNGGA 1 cut(s) 411
PinAI ACCGGT 1 cut(s) 491
PkrI GCNGC 5 cut(s) 440, 610, 2004, 2116, 2465
PleI GAGTC 2 cut(s) 1268, 2612
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 2 cut(s) 1268, 2612
PpuMI RGGWCCY 2 cut(s) 373, 1037
PscI ACATGT 2 cut(s) 2131, 2254
PshAI GACNNNNGTC 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 2229
Psp5II RGGWCCY 2 cut(s) 373, 1037
Psp6I CCWGG 4 cut(s) 177, 341, 1041, 2098
PspFI CCCAGC 2 cut(s) 1298, 2596
PspGI CCWGG 4 cut(s) 177, 341, 1041, 2098
PspOMI GGGCCC 1 cut(s) 645
PspPPI RGGWCCY 2 cut(s) 373, 1037
PspXI VCTCGAGB 1 cut(s) 1753
PstI CTGCAG 1 cut(s) 2023
PsuI RGATCY 3 cut(s) 351, 1330, 2396
PsyI GACNNNGTC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 8 cut(s) 299, 752, 770, 896, 1466, 1506, 2153, 2177
RsaNI GTAC 8 cut(s) 298, 751, 769, 895, 1465, 1505, 2152, 2176
RseI CAYNNNNRTG 3 cut(s) 1089, 1953, 2448
SacI GAGCTC 1 cut(s) 2229
SalI GTCGAC 1 cut(s) 619
SaqAI TTAA 7 cut(s) 153, 1233, 1427, 1908, 2126, 2136, 2259
SatI GCNGC 5 cut(s) 439, 609, 2003, 2115, 2464
ScaI AGTACT 1 cut(s) 2177
SchI GAGTC 2 cut(s) 1269, 2612
ScrFI CCNGG 9 cut(s) 69, 179, 343, 413, 616, 1043, 1180, 1619, 2100
SduI GDGCHC 8 cut(s) 411, 649, 764, 800, 1438, 2229, 2425, 2639
SfaNI GCATC 2 cut(s) 1141, 1771
SfcI CTRYAG 2 cut(s) 1107, 2019
SfiI GGCCNNNNNGGCC 1 cut(s) 988
SfoI GGCGCC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 1753
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 5 cut(s) 373, 489, 1037, 1103, 1938
SlaI CTCGAG 1 cut(s) 1753
SmiMI CAYNNNNRTG 3 cut(s) 1089, 1953, 2448
SmlI CTYRAG 3 cut(s) 1398, 1753, 2606
SmoI CTYRAG 3 cut(s) 1398, 1753, 2606
SseBI AGGCCT 1 cut(s) 1990
SsiI CCGC 9 cut(s) 18, 258, 649, 938, 1148, 1163, 1717, 2114, 2463
SspDI GGCGCC 1 cut(s) 227
SspI AATATT 1 cut(s) 1705
SspMI CTAG 3 cut(s) 32, 1460, 2118
SstI GAGCTC 1 cut(s) 2229
StuI AGGCCT 1 cut(s) 1990
StyD4I CCNGG 9 cut(s) 67, 177, 341, 411, 614, 1041, 1178, 1617, 2098
StyI CCWWGG 3 cut(s) 31, 1030, 1419
TaaI ACNGT 6 cut(s) 319, 766, 964, 1097, 1375, 1547
TaiI ACGT 5 cut(s) 216, 299, 690, 1286, 1823
TaqI TCGA 5 cut(s) 192, 620, 1263, 1754, 1824
TaqII GACCGA 2 cut(s) 386, 1955
TatI WGTACW 4 cut(s) 750, 768, 1464, 2175
TauI GCSGC 2 cut(s) 2117, 2466
TfiI GAWTC 7 cut(s) 110, 476, 702, 911, 1598, 2158, 2663
Tru1I TTAA 7 cut(s) 153, 1233, 1427, 1908, 2126, 2136, 2259
Tru9I TTAA 7 cut(s) 153, 1233, 1427, 1908, 2126, 2136, 2259
TseFI GTSAC 3 cut(s) 337, 398, 1279
TseI GCWGC 3 cut(s) 438, 608, 2002
Tsp45I GTSAC 3 cut(s) 337, 398, 1279
TspDTI ATGAA 3 cut(s) 2150, 2369, 2562
TspGWI ACGGA 5 cut(s) 139, 450, 729, 772, 2219
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 4 cut(s) 1048, 1492, 1853, 2336
VneI GTGCAC 1 cut(s) 760
VpaK11BI GGWCC 5 cut(s) 373, 489, 1037, 1103, 1938
XagI CCTNNNNNAGG 2 cut(s) 2356, 2609
XapI RAATTY 3 cut(s) 1777, 2261, 2485
XceI RCATGY 4 cut(s) 199, 1088, 2135, 2258
XhoI CTCGAG 1 cut(s) 1753
XmaJI CCTAGG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 620, 2166
XmnI GAANNNNTTC 1 cut(s) 2650
XspI CTAG 3 cut(s) 32, 1460, 2118
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 2177
Zsp2I ATGCAT 2 cut(s) 1971, 2311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.