Rmu_co8458799.1_g000001

Electron transfer DM13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8458799.1
OG0014477
Physical Location & Seq
Reverse (-)
420 .. 1781
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8458799.1_g000001.1.cds

Sequence Viewer

Length: 1362 bp
ctgaggaatgcaagcgagactgtgtatgctggaggatcggaagctcaaggagttcaagccagtcccaaggagttaatttgggcaccagacaggaataccccagacctagtgtactatcaatctctttatgaccagaaaatgggatggaaggtacaggtggttgatgggggtctgtcagatatgtataataacagtgtgattttggatgatcagcaagttaccttattttggacactggcacctgattctatatctattgcagtccggggtgagaagaaaagtggtttcgtggcaataggatttggtaggggaatggtgaacagctatgcttatgtgggttggattgataatattggcaaagggcgggtaaatacttactggattgatggaaaggatgcctcaagtgtgcatccaacacgtgagaatttgacatatgtgaggtgcaggtcagaaaatgggatcattacgttcgagttcactcgtcctttgaaaccatcatgtggtaagagtgataagcccgagtgtaaaaacataattgatcaaactactcctcttaaaattatatgggcaatgggtgctacatggactgatgatcatcttggtgatcaaaatatgcattttgctaccagcagtaggcctataagggtgctgcttatgcgtggttctgcagaggcagagcaggatttacagccagtattagcagtgcatggatttatgatgtttctcgcgtgggctatcttgcttcctggtggaatactggcggctagatacttaaaacatgttaagggtgatggttggtaccggattcatgtatacttgcagtactcaggtttggtaatcgttctacttgcccttctttttgctgttgctgagctccgtggtttctttttcggctcattacatgttaaatttggaactacggctatatttttggtttgtatgcaaccagtgaatgcatacctaaggccaaagagaccaaataatggagagcaggtttcctctaaaaggcttctatgggagtatcttcatgtgatcgggggcagatctgccattgtagtaggttttggagcacttttcacaggactgaagcatttaggtgagagatatggcagcgaaaatgttgatggactaaatttagctttgatagtttggttcttgatctgtgtattgatagtaatatatctggaatactatgaaaggcaaagaaggaggaatagaggtatcggcagaagcaattgggtgctggggaaccttgaggaggatgactctgttgatttgttgagcccaaatggaatacattcagagaaagaatcacatacatcaggaagaatggaagttcaattagagcctctgaacagatag

Protein Analysis

453

Amino Acids

50.85

Weight (kDa)

8.19

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54830
malus_domestica MD08G1058600.v1.1 MD15G1037900.v1.1
prunus_persica Prupe.1G391800_v2.0.a1
pyrus_communis pycom08g04850 pycom15g03510
rosa_chinensis RchiOBHm_Chr6g0299641
rosa_laevigata RLG00000011400
rosa_multiflora Rmu_co8233929.1_g000001 Rmu_co8458799.1_g000001 Rmu_sc0002895.1_g000005
rosa_roxburghii Rroxscaffold_7G00168480
rosa_rugosa Rorug06G0291300
rosa_samantha Rh6BG410500 Rh6CG416200 Rh6DG403400
rosa_wichuraiana Rw6G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 435, 982
Acc65I GGTACC 1 cut(s) 798
AccB1I GGYRCC 3 cut(s) 82, 238, 798
AccB7I CCANNNNNTGG 3 cut(s) 139, 500, 983
AccI GTMKAC 1 cut(s) 813
AccII CGCG 1 cut(s) 728
AciI CCGC 2 cut(s) 364, 761
AclWI GGATC 2 cut(s) 43, 467
AcsI RAATTY 3 cut(s) 424, 908, 1132
AcuI CTGAAG 1 cut(s) 1106
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 4 cut(s) 113, 153, 800, 824
AfiI CCNNNNNNNGG 7 cut(s) 139, 228, 500, 633, 983, 1005, 1258
AflIII ACRYGT 3 cut(s) 416, 778, 901
AgsI TTSAA 3 cut(s) 56, 490, 1340
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 4 cut(s) 44, 324, 874, 1139
AluI AGCT 4 cut(s) 44, 324, 874, 1139
Alw21I GWGCWC 2 cut(s) 876, 1072
Alw26I GTCTC 2 cut(s) 11, 967
AlwI GGATC 2 cut(s) 43, 467
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 2 cut(s) 635, 965
ApeKI GCWGC 2 cut(s) 649, 1110
ApoI RAATTY 3 cut(s) 424, 908, 1132
Asp700I GAANNNNTTC 1 cut(s) 1297
Asp718I GGTACC 1 cut(s) 798
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 5 cut(s) 281, 328, 614, 800, 1109
AvaI CYCGRG 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 962
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 3 cut(s) 82, 238, 798
BanII GRGCYC 2 cut(s) 876, 1286
BbrPI CACGTG 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 876, 1072
BbvI GCAGC 2 cut(s) 636, 1122
BccI CCATC 6 cut(s) 138, 158, 380, 502, 785, 1118
BceAI ACGGC 1 cut(s) 936
BciT130I CCWGG 1 cut(s) 747
BclI TGATCA 4 cut(s) 208, 538, 592, 604
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 11, 967
BfaI CTAG 2 cut(s) 107, 765
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 2 cut(s) 435, 982
BglII AGATCT 1 cut(s) 1043
BisI GCNGC 3 cut(s) 650, 762, 1111
BlpI GCTNAGC 1 cut(s) 870
BlsI GCNGC 3 cut(s) 651, 763, 1112
BmcAI AGTACT 1 cut(s) 824
Bme1390I CCNGG 2 cut(s) 266, 747
BmeT110I CYCGRG 1 cut(s) 518
BmiI GGNNCC 4 cut(s) 84, 240, 800, 1250
BmrFI CCNGG 2 cut(s) 266, 747
BmsI GCATC 2 cut(s) 385, 418
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 870
BpuEI CTTGAG 3 cut(s) 30, 385, 1274
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 967
BsaJI CCNNGG 3 cut(s) 66, 265, 877
BsaWI WCCGGW 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 7 cut(s) 139, 228, 500, 633, 983, 1005, 1258
Bse1I ACTGG 6 cut(s) 60, 240, 383, 692, 762, 947
Bse21I CCTNAGG 1 cut(s) 962
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 66, 265, 877
BseGI GGATG 5 cut(s) 149, 211, 400, 409, 1267
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 7 cut(s) 139, 228, 500, 633, 983, 1005, 1258
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 840, 861
BseNI ACTGG 6 cut(s) 60, 240, 383, 692, 762, 947
BseRI GAGGAG 2 cut(s) 540, 1271
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 636, 1122
BseYI CCCAGC 1 cut(s) 1243
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 2 cut(s) 637, 967
BshNI GGYRCC 3 cut(s) 82, 238, 798
BsiHKAI GWGCWC 2 cut(s) 876, 1072
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 265, 802
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 7 cut(s) 139, 228, 500, 633, 983, 1005, 1258
BsmAI GTCTC 2 cut(s) 11, 967
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 2 cut(s) 13, 958
BsnI GGCC 2 cut(s) 637, 967
Bso31I GGTCTC 1 cut(s) 967
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 4 cut(s) 85, 876, 1072, 1286
Bsp143I GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
Bsp1720I GCTNAGC 1 cut(s) 870
BspACI CCGC 2 cut(s) 364, 761
BspANI GGCC 2 cut(s) 637, 967
BspCNI CTCAG 2 cut(s) 839, 862
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 4 cut(s) 84, 240, 800, 1250
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 2 cut(s) 435, 982
BspPI GGATC 2 cut(s) 43, 467
BspT107I GGYRCC 3 cut(s) 82, 238, 798
BspTNI GGTCTC 1 cut(s) 967
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 6 cut(s) 60, 240, 383, 692, 762, 947
BssECI CCNNGG 3 cut(s) 66, 265, 877
BssMI GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
BssNAI GTATAC 1 cut(s) 814
BssT1I CCWWGG 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 814
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 2 cut(s) 22, 194
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 2, 826, 870, 962
BstDSI CCRYGG 1 cut(s) 877
BstENI CCTNNNNNAGG 2 cut(s) 1003, 1256
BstF5I GGATG 5 cut(s) 149, 211, 400, 409, 1267
BstFNI CGCG 1 cut(s) 728
BstKTI GATC 9 cut(s) 38, 211, 462, 541, 595, 607, 1035, 1046, 1161
BstMAI GTCTC 2 cut(s) 11, 967
BstMBI GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
BstMWI GCNNNNNNNGC 2 cut(s) 575, 655
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 2 cut(s) 782, 905
BstSCI CCNGG 2 cut(s) 264, 745
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 636, 1122
BstX2I RGATCY 1 cut(s) 1043
BstYI RGATCY 1 cut(s) 1043
BstZ17I GTATAC 1 cut(s) 814
Bsu36I CCTNAGG 1 cut(s) 962
BsuRI GGCC 2 cut(s) 637, 967
BtgI CCRYGG 1 cut(s) 877
BtsCI GGATG 5 cut(s) 149, 211, 400, 409, 1267
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 4 cut(s) 199, 233, 708, 954
BveI ACCTGC 2 cut(s) 435, 982
Cac8I GCNNGC 1 cut(s) 13
Csp6I GTAC 4 cut(s) 112, 152, 799, 823
CviAII CATG 7 cut(s) 498, 582, 707, 779, 809, 902, 1028
CviQI GTAC 4 cut(s) 112, 152, 799, 823
DdeI CTNAG 4 cut(s) 2, 826, 870, 962
DpnI GATC 9 cut(s) 37, 210, 461, 540, 594, 606, 1034, 1045, 1160
DpnII GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 637
Eco24I GRGCYC 2 cut(s) 876, 1286
Eco31I GGTCTC 1 cut(s) 967
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 1106
Eco72I CACGTG 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 962
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 874
EcoNI CCTNNNNNAGG 2 cut(s) 1003, 1256
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 2 cut(s) 618, 958
EcoT38I GRGCYC 2 cut(s) 876, 1286
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 7 cut(s) 501, 585, 710, 782, 812, 905, 1031
FaqI GGGAC 1 cut(s) 48
FatI CATG 7 cut(s) 497, 581, 706, 778, 808, 901, 1027
FauI CCCGC 1 cut(s) 357
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 4 cut(s) 208, 538, 592, 604
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 3 cut(s) 650, 762, 1111
FokI GGATG 5 cut(s) 156, 218, 396, 407, 1274
FriOI GRGCYC 2 cut(s) 876, 1286
Fsp4HI GCNGC 3 cut(s) 650, 762, 1111
FspBI CTAG 2 cut(s) 107, 765
GluI GCNGC 3 cut(s) 650, 762, 1111
GsaI CCCAGC 1 cut(s) 1247
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 637, 967
HapII CCGG 2 cut(s) 265, 802
Hin1II CATG 7 cut(s) 501, 585, 710, 782, 812, 905, 1031
HinfI GANTC 4 cut(s) 245, 805, 1265, 1310
HpaII CCGG 2 cut(s) 265, 802
HphI GGTGA 5 cut(s) 281, 328, 614, 800, 1109
Hpy166II GTNNAC 4 cut(s) 112, 319, 477, 814
Hpy188I TCNGA 5 cut(s) 40, 178, 451, 1303, 1353
Hpy188III TCNNGA 3 cut(s) 1156, 1184, 1323
Hpy8I GTNNAC 4 cut(s) 112, 319, 477, 814
HpyAV CCTTC 3 cut(s) 142, 863, 1200
HpyCH4III ACNGT 2 cut(s) 22, 194
HpyCH4IV ACGT 2 cut(s) 418, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 655
HpyF3I CTNAG 4 cut(s) 2, 826, 870, 962
HpySE526I ACGT 2 cut(s) 418, 467
Hsp92II CATG 7 cut(s) 501, 585, 710, 782, 812, 905, 1031
KpnI GGTACC 1 cut(s) 802
Ksp22I TGATCA 4 cut(s) 208, 538, 592, 604
Kzo9I GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
LmnI GCTCC 2 cut(s) 879, 1067
Lsp1109I GCAGC 2 cut(s) 636, 1122
LweI GCATC 2 cut(s) 385, 418
MaeI CTAG 2 cut(s) 107, 765
MaeII ACGT 2 cut(s) 418, 467
MaeIII GTNAC 1 cut(s) 217
MalI GATC 9 cut(s) 37, 210, 461, 540, 594, 606, 1034, 1045, 1160
MboI GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
MboII GAAGA 3 cut(s) 286, 1016, 1338
MfeI CAATTG 1 cut(s) 1234
MflI RGATCY 1 cut(s) 1043
MhlI GDGCHC 4 cut(s) 85, 876, 1072, 1286
MluCI AATT 8 cut(s) 75, 424, 534, 558, 908, 1132, 1234, 1340
MlyI GAGTC 1 cut(s) 1259
MmeI TCCRAC 2 cut(s) 320, 437
Mph1103I ATGCAT 2 cut(s) 618, 958
MroXI GAANNNNTTC 1 cut(s) 1297
MseI TTAA 5 cut(s) 74, 555, 773, 783, 906
MslI CAYNNNNRTG 2 cut(s) 600, 1095
MspI CCGG 2 cut(s) 265, 802
MspR9I CCNGG 2 cut(s) 266, 747
MunI CAATTG 1 cut(s) 1234
Mva1269I GAATGC 2 cut(s) 13, 958
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 575, 655
NciI CCSGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 433
NdeII GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
NlaIII CATG 7 cut(s) 501, 585, 710, 782, 812, 905, 1031
NlaIV GGNNCC 4 cut(s) 84, 240, 800, 1250
NsiI ATGCAT 2 cut(s) 618, 958
NspI RCATGY 2 cut(s) 782, 905
PceI AGGCCT 1 cut(s) 637
PciI ACATGT 2 cut(s) 778, 901
PctI GAATGC 2 cut(s) 13, 958
PdmI GAANNNNTTC 1 cut(s) 1297
PfeI GAWTC 3 cut(s) 245, 805, 1310
PflMI CCANNNNNTGG 3 cut(s) 139, 500, 983
PkrI GCNGC 3 cut(s) 651, 763, 1112
PleI GAGTC 1 cut(s) 1259
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 1 cut(s) 1259
Ppu21I YACGTR 1 cut(s) 419
PscI ACATGT 2 cut(s) 778, 901
Psp124BI GAGCTC 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 745
PspCI CACGTG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 1243
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 4 cut(s) 84, 240, 800, 1250
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 1043
RsaI GTAC 4 cut(s) 113, 153, 800, 824
RsaNI GTAC 4 cut(s) 112, 152, 799, 823
RseI CAYNNNNRTG 2 cut(s) 600, 1095
SacI GAGCTC 1 cut(s) 876
SaqAI TTAA 5 cut(s) 74, 555, 773, 783, 906
SatI GCNGC 3 cut(s) 650, 762, 1111
Sau3AI GATC 9 cut(s) 35, 208, 459, 538, 592, 604, 1032, 1043, 1158
ScaI AGTACT 1 cut(s) 824
SchI GAGTC 1 cut(s) 1259
ScrFI CCNGG 2 cut(s) 266, 747
SduI GDGCHC 4 cut(s) 85, 876, 1072, 1286
SfaNI GCATC 2 cut(s) 385, 418
SfcI CTRYAG 1 cut(s) 666
SmiMI CAYNNNNRTG 2 cut(s) 600, 1095
SmlI CTYRAG 3 cut(s) 45, 400, 1253
SmoI CTYRAG 3 cut(s) 45, 400, 1253
Sse9I AATT 8 cut(s) 75, 424, 534, 558, 908, 1132, 1234, 1340
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 2 cut(s) 364, 761
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 107, 765
SstI GAGCTC 1 cut(s) 876
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 264, 745
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 22, 194
TaiI ACGT 2 cut(s) 421, 470
TaqI TCGA 1 cut(s) 471
TasI AATT 8 cut(s) 75, 424, 534, 558, 908, 1132, 1234, 1340
TatI WGTACW 2 cut(s) 111, 822
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 3 cut(s) 245, 805, 1310
Tru1I TTAA 5 cut(s) 74, 555, 773, 783, 906
Tru9I TTAA 5 cut(s) 74, 555, 773, 783, 906
TscAI CASTG 4 cut(s) 199, 240, 708, 954
TseI GCWGC 2 cut(s) 649, 1110
TspDTI ATGAA 3 cut(s) 797, 1016, 1209
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 4 cut(s) 199, 240, 708, 954
Van91I CCANNNNNTGG 3 cut(s) 139, 500, 983
XagI CCTNNNNNAGG 2 cut(s) 1003, 1256
XapI RAATTY 3 cut(s) 424, 908, 1132
XceI RCATGY 2 cut(s) 782, 905
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 1297
XspI CTAG 2 cut(s) 107, 765
ZrmI AGTACT 1 cut(s) 824
Zsp2I ATGCAT 2 cut(s) 618, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.