Rmu_co8233929.1_g000001

Electron transfer DM13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8233929.1
OG0014477
Physical Location & Seq
Forward (+)
1 .. 761
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8233929.1_g000001.1.cds

Sequence Viewer

Length: 761 bp
tcctgaggagaatgtgattgacattgggctggaggctgccaccgggtcgacgaattacatggctttcgggtgggcccgcccgaatatcacacaccagtttatgctcggagctgacgtggcggtcgccggattcaaggaggacggaatgccgtttgtggatgatttttacatcacaaagtacagcgagtgcaccgtgtacaaggacggctccgtcaaaggggtgtgccccgatacaagatacgaagggacggccccgaatggcttggtgaacaataccaaattggtttacggccaccggagggacgccgtgtcgtttattaggtaccagaggccgttggaatcagctgataaaaagtatgatttggcggtgaagcataccgagaaaaggacggtgatttgggccgtggggccgatcaggccaccggatacccttcagccttactatcttccccaaaaccatgggggaccccaggatgtggtttatggccatttggagctgaatgtgtctgagcatgtggatgactgttatggtcctatagaggccgatgacaaggaggatcagcacctcattattgcggatgcaaaggccccgcttgtggttacttccgggcaggcagtgcattatccagaccctccgaacccttcaaaggttctttacattaacaagaaagaggctccggtgttgagggtcgaaagaggggtgccggtcacgttttcaatacaagctgggcatgatgttgctctctacattacttcagatc

Protein Analysis

253

Amino Acids

28.03

Weight (kDa)

5.24

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54830
malus_domestica MD08G1058600.v1.1 MD15G1037900.v1.1
prunus_persica Prupe.1G391800_v2.0.a1
pyrus_communis pycom08g04850 pycom15g03510
rosa_chinensis RchiOBHm_Chr6g0299641
rosa_laevigata RLG00000011400
rosa_multiflora Rmu_co8233929.1_g000001 Rmu_co8458799.1_g000001 Rmu_sc0002895.1_g000005
rosa_roxburghii Rroxscaffold_7G00168480
rosa_rugosa Rorug06G0291300
rosa_samantha Rh6BG410500 Rh6CG416200 Rh6DG403400
rosa_wichuraiana Rw6G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 120, 210
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 322, 701
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 48
AciI CCGC 5 cut(s) 77, 120, 366, 576, 591
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 2 cut(s) 290, 485
AcuI CTGAAG 2 cut(s) 417, 739
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 3 cut(s) 180, 198, 324
AfiI CCNNNNNNNGG 6 cut(s) 217, 299, 385, 476, 596, 647
AgsI TTSAA 3 cut(s) 134, 646, 718
AhdI GACNNNNNGTC 1 cut(s) 308
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 4 cut(s) 111, 345, 497, 726
AluI AGCT 4 cut(s) 111, 345, 497, 726
Alw21I GWGCWC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 1 cut(s) 565
ApaI GGGCCC 1 cut(s) 77
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 322
AspS9I GGNCC 8 cut(s) 73, 74, 251, 400, 408, 465, 531, 587
AsuC2I CCSGG 2 cut(s) 44, 608
AsuHPI GGTGA 3 cut(s) 278, 380, 404
AvaII GGWCC 2 cut(s) 465, 531
AxyI CCTNAGG 1 cut(s) 4
BaeGI GKGCMC 3 cut(s) 77, 192, 228
BalI TGGCCA 1 cut(s) 487
BanI GGYRCC 2 cut(s) 322, 701
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 23
BceAI ACGGC 7 cut(s) 134, 221, 265, 291, 305, 317, 387
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 2 cut(s) 44, 608
BfmI CTRYAG 1 cut(s) 535
BfuI GTATCC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 3 cut(s) 44, 471, 608
Bme18I GGWCC 2 cut(s) 465, 531
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 8 cut(s) 73, 74, 251, 400, 408, 465, 531, 587
BmrFI CCNGG 3 cut(s) 44, 471, 608
BmsI GCATC 1 cut(s) 569
BpmI CTGGAG 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 44, 608
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 403, 458, 469
BsaWI WCCGGW 3 cut(s) 295, 422, 677
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 6 cut(s) 217, 299, 385, 476, 596, 647
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 1 cut(s) 95
Bse21I CCTNAGG 1 cut(s) 4
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 403, 458, 469
BseGI GGATG 4 cut(s) 164, 479, 524, 584
BseLI CCNNNNNNNGG 6 cut(s) 217, 299, 385, 476, 596, 647
BseMII CTCAG 1 cut(s) 499
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 3 cut(s) 77, 192, 228
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 124
BshNI GGYRCC 2 cut(s) 322, 701
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 7 cut(s) 43, 127, 296, 423, 607, 678, 705
BslFI GGGAC 3 cut(s) 260, 315, 478
BslI CCNNNNNNNGG 6 cut(s) 217, 299, 385, 476, 596, 647
BsmFI GGGAC 3 cut(s) 260, 315, 478
BsmI GAATGC 1 cut(s) 151
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 77, 192, 228
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 412, 557
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 5 cut(s) 77, 120, 366, 576, 591
BspCNI CTCAG 1 cut(s) 500
BspPI GGATC 1 cut(s) 565
BspT107I GGYRCC 2 cut(s) 322, 701
BsrFI RCCGGY 1 cut(s) 704
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 3 cut(s) 403, 458, 469
BssMI GATC 2 cut(s) 412, 557
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 194, 392, 525
BstACI GRCGYC 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 77, 613
BstDEI CTNAG 2 cut(s) 4, 508
BstDSI CCRYGG 2 cut(s) 403, 458
BstF5I GGATG 4 cut(s) 164, 479, 524, 584
BstKTI GATC 3 cut(s) 415, 560, 761
BstMBI GATC 2 cut(s) 412, 557
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 117, 416, 617
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 42, 469, 606
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 3 cut(s) 77, 192, 228
BstV1I GCAGC 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 459
Bsu36I CCTNAGG 1 cut(s) 4
BsuI GTATCC 1 cut(s) 419
BtgI CCRYGG 2 cut(s) 403, 458
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 4 cut(s) 164, 479, 524, 584
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 77, 613
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 8 cut(s) 73, 74, 251, 400, 408, 465, 531, 587
CseI GACGC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 179, 197, 323
CviAII CATG 4 cut(s) 59, 459, 513, 732
CviQI GTAC 3 cut(s) 179, 197, 323
DdeI CTNAG 2 cut(s) 4, 508
DpnI GATC 3 cut(s) 414, 559, 760
DpnII GATC 2 cut(s) 412, 557
DrdI GACNNNNNNGTC 2 cut(s) 120, 210
DriI GACNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 2 cut(s) 120, 210
EaeI YGGCCR 2 cut(s) 290, 485
Eam1105I GACNNNNNGTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 465, 531
Eco57I CTGAAG 2 cut(s) 417, 739
Eco81I CCTNAGG 1 cut(s) 4
EcoO109I RGGNCCY 2 cut(s) 465, 587
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 4 cut(s) 62, 462, 516, 735
FaqI GGGAC 3 cut(s) 260, 315, 478
FatI CATG 4 cut(s) 58, 458, 512, 731
FauI CCCGC 2 cut(s) 84, 598
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 4 cut(s) 171, 486, 531, 591
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
GsaI CCCAGC 1 cut(s) 730
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 7 cut(s) 43, 127, 296, 423, 607, 678, 705
HgaI GACGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 4 cut(s) 62, 462, 516, 735
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 130, 339
HpaII CCGG 7 cut(s) 43, 127, 296, 423, 607, 678, 705
HphI GGTGA 3 cut(s) 278, 380, 404
Hpy166II GTNNAC 5 cut(s) 49, 190, 197, 269, 287
Hpy188I TCNGA 4 cut(s) 108, 509, 637, 758
Hpy188III TCNNGA 2 cut(s) 3, 627
Hpy8I GTNNAC 5 cut(s) 49, 190, 197, 269, 287
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 237, 441, 652
HpyCH4III ACNGT 3 cut(s) 194, 392, 525
HpyCH4IV ACGT 2 cut(s) 115, 711
HpyCH4V TGCA 3 cut(s) 190, 582, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 416, 617
HpyF3I CTNAG 2 cut(s) 4, 508
HpySE526I ACGT 2 cut(s) 115, 711
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 4 cut(s) 62, 462, 516, 735
KflI GGGWCCC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 412, 557
LmnI GCTCC 4 cut(s) 108, 213, 494, 680
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 569
MaeII ACGT 2 cut(s) 115, 711
MaeIII GTNAC 2 cut(s) 599, 707
MalI GATC 3 cut(s) 414, 559, 760
MboI GATC 2 cut(s) 412, 557
MboII GAAGA 1 cut(s) 438
MhlI GDGCHC 3 cut(s) 77, 192, 228
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 2 cut(s) 53, 279
MluNI TGGCCA 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 316
Mox20I TGGCCA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 661
MslI CAYNNNNRTG 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 7 cut(s) 43, 127, 296, 423, 607, 678, 705
MspR9I CCNGG 3 cut(s) 44, 471, 608
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 3 cut(s) 117, 416, 617
NciI CCSGG 2 cut(s) 44, 608
NcoI CCATGG 1 cut(s) 458
NdeII GATC 2 cut(s) 412, 557
NlaIII CATG 4 cut(s) 62, 462, 516, 735
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 130, 339
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 38
PpuMI RGGWCCY 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 1 cut(s) 469
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 8 cut(s) 73, 74, 251, 400, 408, 465, 531, 587
PspPPI RGGWCCY 1 cut(s) 465
PvuII CAGCTG 1 cut(s) 345
RsaI GTAC 3 cut(s) 180, 198, 324
RsaNI GTAC 3 cut(s) 179, 197, 323
RseI CAYNNNNRTG 1 cut(s) 517
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 661
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 412, 557
Sau96I GGNCC 8 cut(s) 73, 74, 251, 400, 408, 465, 531, 587
ScrFI CCNGG 3 cut(s) 44, 471, 608
SduI GDGCHC 3 cut(s) 77, 192, 228
SetI ASST 9 cut(s) 113, 118, 324, 347, 499, 568, 652, 714, 728
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 535
SfiI GGCCNNNNNGGCC 1 cut(s) 416
SinI GGWCC 2 cut(s) 465, 531
SmiMI CAYNNNNRTG 1 cut(s) 517
Sse9I AATT 2 cut(s) 53, 279
SsiI CCGC 5 cut(s) 77, 120, 366, 576, 591
StyD4I CCNGG 3 cut(s) 42, 469, 606
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 3 cut(s) 194, 392, 525
TaiI ACGT 2 cut(s) 118, 714
TaqI TCGA 2 cut(s) 48, 691
TasI AATT 2 cut(s) 53, 279
TatI WGTACW 2 cut(s) 178, 196
TfiI GAWTC 2 cut(s) 130, 339
Tru1I TTAA 1 cut(s) 661
Tru9I TTAA 1 cut(s) 661
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 707
TspGWI ACGGA 2 cut(s) 157, 200
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 476
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 465, 531
XceI RCATGY 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.