Rh6CG416200

Electron transfer DM13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014477
Physical Location & Seq
Forward (+)
60047621 .. 60051343
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG416200.1

Sequence Viewer

Length: 2721 bp
ATGCCTCGCAAGCCCACCGCCACCATCTTCCTAGGGTTTCTCCTCCTCCTCCTTACATTCTGCTATGCCGATCCGGGTTCCAATTGCCCCAAAACCAGCCCTCTCGTCAACTTGGAATCGCAATTCAAAATGCTCCAGCACCAGCTCAGAGGCTCCGTTAAGATACTTGACGATTGCTCCTTCCAGGTTTCCAATTTCGACATGCTCTCCGGCTCCGACGTCCACTGGTGGGGCGCCGTCGCTCCCGATTTCAATAATCTCACCGCCGGCTTCGTAATCTCCGACCAGAAGCTCAACGAGACGTACAAAAGCGCGAGCTTCACTGTGCGCCTGAGGGACAATGTCACCTGGGATCAGATCCAAGTCCTCGCCGTCTGGGACCTCCCCACCTCCTCCGACTTCGGTCACATCGTGCTCCGGGATGTAGTAAACAGATCGTCCGGCAGCTCCGATTTGGCTCCTTCTCCGTCGCCGGCGAGCGATTCAGGGAATGGGACCGGTCAGGTTCACACTGAGCCGACTATGTTGGTGAATTGCAAGAGTTTGTCCGACGATTTTAGGGTTAGATGGACACTGCGTCCTGAGGAGAATGTGATTGACATTGGGCTGGAGGCTGCCACCGGGTCGACGAATTACATGGCTTTCGGGTGGGCCCGCCCCAATATCACACACCAGTTTATGCTCGGAGCTGACGTGGCCGTCGCCGGATTCAAGGAGGACGGAATGCCGTTTGTGGATGATTTTTACATCACAAAGTACAGCGAGTGCACCGTTTACAAGGACGGCTCCGTCAAAGGGGTGTGCCCCGATACAAGATACGAAGGGACGGCCCCGAATGGCTCGGTGAACAATACCAAATTGGTTTACGGCCACCGGAGGGACGCCGTGTCGTTTATTAGGTACCAGAGGCCGTTGGAATCAGCTGATAAAAAGTATGATTTGGCGGTGAAGCATACCGAGAAAAGGACGGTGATTTGGGCCGTGGGGCCGATCAGGCCACCGGATACCCTTCAGCCTTACTATCTTCCCCAAAACCATGGGGGACCCCAGGATGTGGTTTATGGCCATTTGGAGCTGAATGTGTCTGAGCATGTGGATGACTGTTATGGTCCTATAGAGGCCGATGACAAGGAGGATCAGCACCTCATTATTGCGGATGCAAAGGCCCCGCTTGTGGTTACTTCCGGGCAGGCAGTGCATTATCCAGACCCTCCAAACCCTTCAAAGGTTCTTTACATTAACAAGAAAGAGGCTCCGGTGTTGAGAGTTGAAAGAGGGGTGCCGGTCACGTTTTCAATACAAGCTGGGCATGATGTTGCTCTCTACATTACTTCAGACCCTCTTGGTGGGAATGCTACACTGAGGAATGCAAGCGAGACTGTGTATGCTGGAGGATCGGAAGCTCAAGGAGTTCAAGCCAGTCCCAAGGAGTTAATTTGGGCACCAGACAGGAATACCCCAGACCTAGTGTACTATCAATCTCTTTATGACCAGAAAATGGGATGGAAGGTACAGGTGGTTGATGGGGGTCTGTCAGATATGTATAATAACAGTGTGATTTTGGATGATCAGCAAGTTACCTTATTTTGGACACTGGCACATGATTCTATATCTATTGCAGTCCGGGGTGAGAAGAAAAGTGGTTTCGTGGCAGTAGGATTTGGTAGGGGAATGGTGAACAGCTATGCTTATGTGGGTTGGATTGATAATATTGGCAAAGGGCGGGTAAATACTTACTGGATTGATGGAAAGGATGCCTCAAATGTGCATCCAACACATGAGAATTTGACATATGTGAGGTGCAGGTCAGAAAATGGGATCATTACGTTTGAGTTCACTCGTCCTTTGAAACCATCATGTGGTAAGAGTGATAAGCCCGAGTGTAAAAACATAATTGATCCAACTACTCCTCTTAAAATTATATGGGCAATGGGTGCTACATGGACTGATGATCATCTTGGTGATCAAAATATGCATTTTGCTACCAGCAGTAGGCCTATAAGGGTGCTGCTTATGCGTGGTTCTGCAGAGGCAGAGCAGGATTTACAGCCAGTATTAGCAGTGCATGGATTTATGATGTTTCTCGCTTGGGCTATCTTGCTTCCTGGTGGAATACTGGCGGCTAGATACTTAAAACATGTTAAGGGTGATGGTTGGTACCGGATTCATGTATACTTGCAGTACTCAGGTTTGGTAATCGTTCTACTTGCCCTTCTTTTTGCCGTTGCTGAGCTCCGTGGTTTCTTTTTCGGCTCATTACATGTTAAATTTGGAACTACGGCTATATTTTTGGTTTGTATGCAACCAGTGAATGCATACCTAAGGCCAAAGAGACCAAATAATGGAGAGCAGGTTTCCTCTAAAAGGCTTCTATGGGAGTATCTTCATGTGATTGGGGGCAGATCTGCCATTGTAGTAGGTTTTGGAGCACTTTTCACAGGACTGAAGCATTTAGGTGATAGATATGGCGGCGAAAATGTTGATGGACTAAATTTAGCTTTGATAGTTTGGTTCTTGATCTGTGTATTGATAGTAATATATCTGGAATACTATGAAAGGCAAAGAAGGAGGAATAGAAGTATCGGCAGAAGCAATTGGGTGCTGGGGAACCTTGAGGAGGATGACTCTGTTGATTTGTTGAGCCCAAATGGAATACATTCAGAGAAAGAATCACATACATCAGGAAGAATGGAAGTTCAATTAGAGCCTCTGAACAGATAG

Protein Analysis

906

Amino Acids

100.8

Weight (kDa)

6.07

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DM13 PF10517 41 - 138 5.3e-15 Electron transfer DM13
DOMON PF03351 184 - 329 9.1e-12 DOMON domain
At5g54830 PF25489 383 - 508 1.1e-69 At5g54830-like domain
DOMON PF03351 522 - 645 7.2e-25 DOMON domain
Cytochrom_C_asm PF01578 685 - 852 9.5e-06 Cytochrome C assembly protein
Cytochrom_B561 PF03188 688 - 816 4.9e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54830
malus_domestica MD08G1058600.v1.1 MD15G1037900.v1.1
prunus_persica Prupe.1G391800_v2.0.a1
pyrus_communis pycom08g04850 pycom15g03510
rosa_chinensis RchiOBHm_Chr6g0299641
rosa_laevigata RLG00000011400
rosa_multiflora Rmu_co8233929.1_g000001 Rmu_co8458799.1_g000001 Rmu_sc0002895.1_g000005
rosa_roxburghii Rroxscaffold_7G00168480
rosa_rugosa Rorug06G0291300
rosa_samantha Rh6BG410500 Rh6CG416200 Rh6DG403400
rosa_wichuraiana Rw6G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 698, 788
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 2 cut(s) 1794, 2341
Acc65I GGTACC 2 cut(s) 900, 2157
AccB1I GGYRCC 5 cut(s) 233, 900, 1279, 1441, 2157
AccB7I CCANNNNNTGG 4 cut(s) 1054, 1498, 1859, 2342
AccI GTMKAC 2 cut(s) 626, 2172
AccII CGCG 1 cut(s) 314
AciI CCGC 9 cut(s) 18, 264, 655, 944, 1154, 1169, 1723, 2120, 2469
AclWI GGATC 7 cut(s) 65, 352, 360, 1143, 1402, 1826, 1892
AcoI YGGCCR 3 cut(s) 696, 868, 1063
AcsI RAATTY 3 cut(s) 1783, 2267, 2491
AcuI CTGAAG 3 cut(s) 995, 1317, 2465
AcyI GRCGYC 3 cut(s) 219, 234, 882
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 7 cut(s) 305, 758, 902, 1472, 1512, 2159, 2183
AflIII ACRYGT 2 cut(s) 2137, 2260
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 9 cut(s) 127, 253, 712, 1224, 1271, 1296, 1415, 1849, 2699
AhdI GACNNNNNGTC 2 cut(s) 576, 886
AjiI CACGTC 1 cut(s) 694
AjnI CCWGG 4 cut(s) 183, 347, 1047, 2104
Alw21I GWGCWC 4 cut(s) 417, 770, 2235, 2431
Alw26I GTCTC 3 cut(s) 293, 1370, 2326
Alw44I GTGCAC 1 cut(s) 766
AlwI GGATC 7 cut(s) 65, 352, 360, 1143, 1402, 1826, 1892
Ama87I CYCGRG 1 cut(s) 1877
ApaI GGGCCC 1 cut(s) 655
ApaLI GTGCAC 1 cut(s) 766
ApeKI GCWGC 3 cut(s) 444, 614, 2008
ApoI RAATTY 3 cut(s) 1783, 2267, 2491
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 2656
Asp718I GGTACC 2 cut(s) 900, 2157
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 3 cut(s) 236, 314, 330
AsuC2I CCSGG 5 cut(s) 75, 419, 622, 1186, 1625
AvaI CYCGRG 1 cut(s) 1877
AvaII GGWCC 4 cut(s) 379, 495, 1043, 1109
AvrII CCTAGG 1 cut(s) 31
AxyI CCTNAGG 3 cut(s) 332, 582, 2321
BaeGI GKGCMC 4 cut(s) 655, 770, 806, 1444
BalI TGGCCA 1 cut(s) 1065
BanI GGYRCC 5 cut(s) 233, 900, 1279, 1441, 2157
BanII GRGCYC 3 cut(s) 655, 2235, 2645
Bbv12I GWGCWC 4 cut(s) 417, 770, 2235, 2431
BbvI GCAGC 3 cut(s) 456, 601, 1995
BccI CCATC 8 cut(s) 32, 561, 1497, 1517, 1739, 1861, 2144, 2477
BciT130I CCWGG 4 cut(s) 185, 349, 1049, 2106
BciVI GTATCC 1 cut(s) 997
BclI TGATCA 3 cut(s) 1567, 1951, 1963
BcnI CCSGG 5 cut(s) 75, 419, 622, 1186, 1625
BcoDI GTCTC 3 cut(s) 293, 1370, 2326
BfaI CTAG 3 cut(s) 32, 1466, 2124
BfmI CTRYAG 2 cut(s) 1113, 2025
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 2 cut(s) 1794, 2341
BfuI GTATCC 1 cut(s) 997
BglI GCCNNNNNGGC 1 cut(s) 994
BglII AGATCT 1 cut(s) 2402
BisI GCNGC 5 cut(s) 445, 615, 2009, 2121, 2470
BlnI CCTAGG 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 2229
BlsI GCNGC 5 cut(s) 446, 616, 2010, 2122, 2471
BmcAI AGTACT 1 cut(s) 2183
Bme1390I CCNGG 9 cut(s) 75, 185, 349, 419, 622, 1049, 1186, 1625, 2106
Bme18I GGWCC 4 cut(s) 379, 495, 1043, 1109
BmeRI GACNNNNNGTC 2 cut(s) 576, 886
BmeT110I CYCGRG 1 cut(s) 1877
BmgBI CACGTC 1 cut(s) 694
BmrFI CCNGG 9 cut(s) 75, 185, 349, 419, 622, 1049, 1186, 1625, 2106
BmsI GCATC 3 cut(s) 1147, 1744, 1777
BoxI GACNNNNGTC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 2609, 2641
BpmI CTGGAG 3 cut(s) 119, 629, 1410
Bpu1102I GCTNAGC 1 cut(s) 2229
BpuEI CTTGAG 2 cut(s) 1389, 2633
BpuMI CCSGG 5 cut(s) 75, 419, 622, 1186, 1625
BsaBI GATNNNNATC 1 cut(s) 1953
BsaHI GRCGYC 3 cut(s) 219, 234, 882
BsaI GGTCTC 1 cut(s) 2326
BsaJI CCNNGG 8 cut(s) 31, 348, 981, 1036, 1047, 1425, 1624, 2236
BsaWI WCCGGW 5 cut(s) 497, 873, 1000, 1255, 2160
BsaXI ACNNNNNCTCC 8 cut(s) 161, 191, 191, 221, 678, 708, 2337, 2367
Bse118I RCCGGY 4 cut(s) 266, 472, 497, 1282
Bse1I ACTGG 8 cut(s) 230, 673, 1419, 1599, 1742, 2051, 2121, 2306
Bse21I CCTNAGG 3 cut(s) 332, 582, 2321
Bse3DI GCAATG 1 cut(s) 1935
Bse8I GATNNNNATC 1 cut(s) 1953
BseBI CCWGG 4 cut(s) 185, 349, 1049, 2106
BseDI CCNNGG 8 cut(s) 31, 348, 981, 1036, 1047, 1425, 1624, 2236
BseJI GATNNNNATC 1 cut(s) 1953
BseMI GCAATG 1 cut(s) 1935
BseMII CTCAG 8 cut(s) 160, 323, 504, 573, 1077, 1352, 2199, 2220
BseNI ACTGG 8 cut(s) 230, 673, 1419, 1599, 1742, 2051, 2121, 2306
BseRI GAGGAG 7 cut(s) 32, 35, 38, 382, 599, 1899, 2630
BseSI GKGCMC 4 cut(s) 655, 770, 806, 1444
BseXI GCAGC 3 cut(s) 456, 601, 1995
BseYI CCCAGC 2 cut(s) 1304, 2602
BsgI GTGCAG 1 cut(s) 1822
Bsh1236I CGCG 1 cut(s) 314
BshNI GGYRCC 5 cut(s) 233, 900, 1279, 1441, 2157
BshTI ACCGGT 1 cut(s) 497
BsiHKAI GWGCWC 4 cut(s) 417, 770, 2235, 2431
BsiHKCI CYCGRG 1 cut(s) 1877
BslFI GGGAC 7 cut(s) 350, 392, 508, 838, 893, 1056, 1407
BsmAI GTCTC 3 cut(s) 293, 1370, 2326
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 7 cut(s) 350, 392, 508, 838, 893, 1056, 1407
BsmI GAATGC 4 cut(s) 729, 1357, 1372, 2317
Bso31I GGTCTC 1 cut(s) 2326
BsoBI CYCGRG 1 cut(s) 1877
Bsp120I GGGCCC 1 cut(s) 651
Bsp1286I GDGCHC 8 cut(s) 417, 655, 770, 806, 1444, 2235, 2431, 2645
Bsp1720I GCTNAGC 1 cut(s) 2229
Bsp19I CCATGG 1 cut(s) 1036
BspACI CCGC 9 cut(s) 18, 264, 655, 944, 1154, 1169, 1723, 2120, 2469
BspCNI CTCAG 8 cut(s) 159, 324, 505, 574, 1078, 1353, 2198, 2221
BspFNI CGCG 1 cut(s) 314
BspMAI CTGCAG 1 cut(s) 2029
BspMI ACCTGC 2 cut(s) 1794, 2341
BspPI GGATC 7 cut(s) 65, 352, 360, 1143, 1402, 1826, 1892
BspT107I GGYRCC 5 cut(s) 233, 900, 1279, 1441, 2157
BspTNI GGTCTC 1 cut(s) 2326
BsrDI GCAATG 1 cut(s) 1935
BsrFI RCCGGY 4 cut(s) 266, 472, 497, 1282
BsrI ACTGG 8 cut(s) 230, 673, 1419, 1599, 1742, 2051, 2121, 2306
BssAI RCCGGY 4 cut(s) 266, 472, 497, 1282
BssECI CCNNGG 8 cut(s) 31, 348, 981, 1036, 1047, 1425, 1624, 2236
BssNAI GTATAC 1 cut(s) 2173
BssNI GRCGYC 3 cut(s) 219, 234, 882
BssT1I CCWWGG 3 cut(s) 31, 1036, 1425
Bst1107I GTATAC 1 cut(s) 2173
Bst2UI CCWGG 4 cut(s) 185, 349, 1049, 2106
Bst4CI ACNGT 6 cut(s) 325, 772, 970, 1103, 1381, 1553
BstACI GRCGYC 3 cut(s) 219, 234, 882
BstAPI GCANNNNNTGC 2 cut(s) 1195, 1934
BstC8I GCNNGC 8 cut(s) 11, 268, 316, 474, 478, 655, 1191, 1372
BstDEI CTNAG 9 cut(s) 146, 332, 513, 582, 1086, 1361, 2185, 2229, 2321
BstDSI CCRYGG 3 cut(s) 981, 1036, 2236
BstENI CCTNNNNNAGG 2 cut(s) 2362, 2615
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 3 cut(s) 236, 314, 330
BstMAI GTCTC 3 cut(s) 293, 1370, 2326
BstMWI GCNNNNNNNGC 6 cut(s) 10, 695, 994, 1195, 1934, 2014
BstNI CCWGG 4 cut(s) 185, 349, 1049, 2106
BstNSI RCATGY 4 cut(s) 205, 1094, 2141, 2264
BstPAI GACNNNNGTC 1 cut(s) 402
BstSCI CCNGG 9 cut(s) 73, 183, 347, 417, 620, 1047, 1184, 1623, 2104
BstSFI CTRYAG 2 cut(s) 1113, 2025
BstSLI GKGCMC 4 cut(s) 655, 770, 806, 1444
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 456, 601, 1995
BstX2I RGATCY 2 cut(s) 357, 2402
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 2 cut(s) 357, 2402
BstZ17I GTATAC 1 cut(s) 2173
Bsu36I CCTNAGG 3 cut(s) 332, 582, 2321
BsuI GTATCC 1 cut(s) 997
BtgI CCRYGG 3 cut(s) 981, 1036, 2236
BtrI CACGTC 1 cut(s) 694
BtsI GCAGTG 3 cut(s) 572, 1200, 2067
BveI ACCTGC 2 cut(s) 1794, 2341
Cac8I GCNNGC 8 cut(s) 11, 268, 316, 474, 478, 655, 1191, 1372
CfoI GCGC 3 cut(s) 236, 314, 330
Cfr10I RCCGGY 4 cut(s) 266, 472, 497, 1282
CseI GACGC 2 cut(s) 566, 890
Csp6I GTAC 7 cut(s) 304, 757, 901, 1471, 1511, 2158, 2182
CspAI ACCGGT 1 cut(s) 497
CviQI GTAC 7 cut(s) 304, 757, 901, 1471, 1511, 2158, 2182
DdeI CTNAG 9 cut(s) 146, 332, 513, 582, 1086, 1361, 2185, 2229, 2321
DinI GGCGCC 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 412
DrdI GACNNNNNNGTC 2 cut(s) 698, 788
DriI GACNNNNNGTC 2 cut(s) 576, 886
DseDI GACNNNNNNGTC 2 cut(s) 698, 788
EaeI YGGCCR 3 cut(s) 696, 868, 1063
Eam1105I GACNNNNNGTC 2 cut(s) 576, 886
Ecl136II GAGCTC 1 cut(s) 2233
Eco130I CCWWGG 3 cut(s) 31, 1036, 1425
Eco147I AGGCCT 1 cut(s) 1996
Eco24I GRGCYC 3 cut(s) 655, 2235, 2645
Eco31I GGTCTC 1 cut(s) 2326
Eco47I GGWCC 4 cut(s) 379, 495, 1043, 1109
Eco53kI GAGCTC 1 cut(s) 2233
Eco57I CTGAAG 3 cut(s) 995, 1317, 2465
Eco81I CCTNAGG 3 cut(s) 332, 582, 2321
Eco88I CYCGRG 1 cut(s) 1877
EcoICRI GAGCTC 1 cut(s) 2233
EcoNI CCTNNNNNAGG 2 cut(s) 2362, 2615
EcoO109I RGGNCCY 3 cut(s) 379, 1043, 1165
EcoRII CCWGG 4 cut(s) 183, 347, 1047, 2104
EcoT14I CCWWGG 3 cut(s) 31, 1036, 1425
EcoT22I ATGCAT 2 cut(s) 1977, 2317
EcoT38I GRGCYC 3 cut(s) 655, 2235, 2645
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 3 cut(s) 31, 1036, 1425
Esp3I CGTCTC 1 cut(s) 293
FaqI GGGAC 7 cut(s) 350, 392, 508, 838, 893, 1056, 1407
FauI CCCGC 3 cut(s) 662, 1176, 1716
FauNDI CATATG 1 cut(s) 1792
FbaI TGATCA 3 cut(s) 1567, 1951, 1963
FblI GTMKAC 2 cut(s) 626, 2172
Fnu4HI GCNGC 5 cut(s) 445, 615, 2009, 2121, 2470
FriOI GRGCYC 3 cut(s) 655, 2235, 2645
Fsp4HI GCNGC 5 cut(s) 445, 615, 2009, 2121, 2470
FspBI CTAG 3 cut(s) 32, 1466, 2124
GlaI GCGC 3 cut(s) 235, 313, 329
GluI GCNGC 5 cut(s) 445, 615, 2009, 2121, 2470
GsaI CCCAGC 2 cut(s) 1308, 2606
GsuI CTGGAG 3 cut(s) 119, 629, 1410
HaeII RGCGCY 1 cut(s) 237
HgaI GACGC 2 cut(s) 566, 890
HhaI GCGC 3 cut(s) 236, 314, 330
Hin1I GRCGYC 3 cut(s) 219, 234, 882
Hin6I GCGC 3 cut(s) 234, 312, 328
HinP1I GCGC 3 cut(s) 234, 312, 328
HincII GTYRAC 2 cut(s) 109, 627
HindII GTYRAC 2 cut(s) 109, 627
HinfI GANTC 8 cut(s) 116, 482, 708, 917, 1604, 2164, 2624, 2669
Hpy188III TCNNGA 6 cut(s) 245, 581, 1205, 2515, 2543, 2682
Hpy99I CGWCG 6 cut(s) 221, 242, 472, 554, 631, 704
HpyAV CCTTC 8 cut(s) 190, 471, 815, 1019, 1230, 1501, 2222, 2559
HpyCH4III ACNGT 6 cut(s) 325, 772, 970, 1103, 1381, 1553
HpyCH4IV ACGT 5 cut(s) 219, 302, 693, 1289, 1826
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 695, 994, 1195, 1934, 2014
HpyF3I CTNAG 9 cut(s) 146, 332, 513, 582, 1086, 1361, 2185, 2229, 2321
HpySE526I ACGT 5 cut(s) 219, 302, 693, 1289, 1826
Hsp92I GRCGYC 3 cut(s) 219, 234, 882
HspAI GCGC 3 cut(s) 234, 312, 328
KasI GGCGCC 1 cut(s) 233
KflI GGGWCCC 1 cut(s) 1043
KpnI GGTACC 2 cut(s) 904, 2161
KroI GCCGGC 2 cut(s) 266, 472
KroNI GCCGGC 2 cut(s) 268, 474
Ksp22I TGATCA 3 cut(s) 1567, 1951, 1963
Lsp1109I GCAGC 3 cut(s) 456, 601, 1995
LweI GCATC 3 cut(s) 1147, 1744, 1777
MaeI CTAG 3 cut(s) 32, 1466, 2124
MaeII ACGT 5 cut(s) 219, 302, 693, 1289, 1826
MaeIII GTNAC 5 cut(s) 343, 404, 1177, 1285, 1576
MboII GAAGA 5 cut(s) 19, 1016, 1645, 2375, 2697
MfeI CAATTG 2 cut(s) 82, 2593
MflI RGATCY 2 cut(s) 357, 2402
MhlI GDGCHC 8 cut(s) 417, 655, 770, 806, 1444, 2235, 2431, 2645
MlsI TGGCCA 1 cut(s) 1065
MluNI TGGCCA 1 cut(s) 1065
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 2618
MmeI TCCRAC 8 cut(s) 240, 306, 420, 573, 894, 1679, 1796, 1925
Mox20I TGGCCA 1 cut(s) 1065
Mph1103I ATGCAT 2 cut(s) 1977, 2317
MreI CGCCGGCG 1 cut(s) 472
MroNI GCCGGC 2 cut(s) 266, 472
MroXI GAANNNNTTC 1 cut(s) 2656
MscI TGGCCA 1 cut(s) 1065
MseI TTAA 7 cut(s) 159, 1239, 1433, 1914, 2132, 2142, 2265
MslI CAYNNNNRTG 3 cut(s) 1095, 1959, 2454
Msp20I TGGCCA 1 cut(s) 1065
MspA1I CMGCKG 1 cut(s) 923
MspR9I CCNGG 9 cut(s) 75, 185, 349, 419, 622, 1049, 1186, 1625, 2106
MunI CAATTG 2 cut(s) 82, 2593
Mva1269I GAATGC 4 cut(s) 729, 1357, 1372, 2317
MvaI CCWGG 4 cut(s) 185, 349, 1049, 2106
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 6 cut(s) 10, 695, 994, 1195, 1934, 2014
NaeI GCCGGC 2 cut(s) 268, 474
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 5 cut(s) 75, 419, 622, 1186, 1625
NcoI CCATGG 1 cut(s) 1036
NdeI CATATG 1 cut(s) 1792
NgoMIV GCCGGC 2 cut(s) 266, 472
NmuCI GTSAC 3 cut(s) 343, 404, 1285
NsiI ATGCAT 2 cut(s) 1977, 2317
NspI RCATGY 4 cut(s) 205, 1094, 2141, 2264
PceI AGGCCT 1 cut(s) 1996
PciI ACATGT 2 cut(s) 2137, 2260
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 408, 690
PctI GAATGC 4 cut(s) 729, 1357, 1372, 2317
PdiI GCCGGC 2 cut(s) 268, 474
PdmI GAANNNNTTC 1 cut(s) 2656
PfeI GAWTC 7 cut(s) 116, 482, 708, 917, 1604, 2164, 2669
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 4 cut(s) 1054, 1498, 1859, 2342
PfoI TCCNGGA 1 cut(s) 417
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 5 cut(s) 446, 616, 2010, 2122, 2471
PleI GAGTC 1 cut(s) 2618
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 2618
PpuMI RGGWCCY 2 cut(s) 379, 1043
PscI ACATGT 2 cut(s) 2137, 2260
PshAI GACNNNNGTC 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 2235
Psp5II RGGWCCY 2 cut(s) 379, 1043
Psp6I CCWGG 4 cut(s) 183, 347, 1047, 2104
PspFI CCCAGC 2 cut(s) 1304, 2602
PspGI CCWGG 4 cut(s) 183, 347, 1047, 2104
PspOMI GGGCCC 1 cut(s) 651
PspPPI RGGWCCY 2 cut(s) 379, 1043
PstI CTGCAG 1 cut(s) 2029
PsuI RGATCY 2 cut(s) 357, 2402
PsyI GACNNNGTC 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 7 cut(s) 305, 758, 902, 1472, 1512, 2159, 2183
RsaNI GTAC 7 cut(s) 304, 757, 901, 1471, 1511, 2158, 2182
RseI CAYNNNNRTG 3 cut(s) 1095, 1959, 2454
SacI GAGCTC 1 cut(s) 2235
SalI GTCGAC 1 cut(s) 625
SaqAI TTAA 7 cut(s) 159, 1239, 1433, 1914, 2132, 2142, 2265
SatI GCNGC 5 cut(s) 445, 615, 2009, 2121, 2470
ScaI AGTACT 1 cut(s) 2183
SchI GAGTC 1 cut(s) 2618
ScrFI CCNGG 9 cut(s) 75, 185, 349, 419, 622, 1049, 1186, 1625, 2106
SduI GDGCHC 8 cut(s) 417, 655, 770, 806, 1444, 2235, 2431, 2645
SfaNI GCATC 3 cut(s) 1147, 1744, 1777
SfcI CTRYAG 2 cut(s) 1113, 2025
SfiI GGCCNNNNNGGCC 1 cut(s) 994
SfoI GGCGCC 1 cut(s) 235
SgrAI CRCCGGYG 1 cut(s) 472
SinI GGWCC 4 cut(s) 379, 495, 1043, 1109
SmiMI CAYNNNNRTG 3 cut(s) 1095, 1959, 2454
SmlI CTYRAG 2 cut(s) 1404, 2612
SmoI CTYRAG 2 cut(s) 1404, 2612
SseBI AGGCCT 1 cut(s) 1996
SsiI CCGC 9 cut(s) 18, 264, 655, 944, 1154, 1169, 1723, 2120, 2469
SspDI GGCGCC 1 cut(s) 233
SspI AATATT 1 cut(s) 1711
SspMI CTAG 3 cut(s) 32, 1466, 2124
SstI GAGCTC 1 cut(s) 2235
StuI AGGCCT 1 cut(s) 1996
StyD4I CCNGG 9 cut(s) 73, 183, 347, 417, 620, 1047, 1184, 1623, 2104
StyI CCWWGG 3 cut(s) 31, 1036, 1425
TaaI ACNGT 6 cut(s) 325, 772, 970, 1103, 1381, 1553
TaiI ACGT 5 cut(s) 222, 305, 696, 1292, 1829
TaqI TCGA 2 cut(s) 198, 626
TaqII GACCGA 1 cut(s) 392
TatI WGTACW 3 cut(s) 756, 1470, 2181
TauI GCSGC 2 cut(s) 2123, 2472
TfiI GAWTC 7 cut(s) 116, 482, 708, 917, 1604, 2164, 2669
Tru1I TTAA 7 cut(s) 159, 1239, 1433, 1914, 2132, 2142, 2265
Tru9I TTAA 7 cut(s) 159, 1239, 1433, 1914, 2132, 2142, 2265
TseFI GTSAC 3 cut(s) 343, 404, 1285
TseI GCWGC 3 cut(s) 444, 614, 2008
Tsp45I GTSAC 3 cut(s) 343, 404, 1285
TspDTI ATGAA 3 cut(s) 2156, 2375, 2568
TspGWI ACGGA 5 cut(s) 145, 456, 735, 778, 2225
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 4 cut(s) 1054, 1498, 1859, 2342
VneI GTGCAC 1 cut(s) 766
VpaK11BI GGWCC 4 cut(s) 379, 495, 1043, 1109
XagI CCTNNNNNAGG 2 cut(s) 2362, 2615
XapI RAATTY 3 cut(s) 1783, 2267, 2491
XceI RCATGY 4 cut(s) 205, 1094, 2141, 2264
XmaJI CCTAGG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 626, 2172
XmnI GAANNNNTTC 1 cut(s) 2656
XspI CTAG 3 cut(s) 32, 1466, 2124
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 2183
Zsp2I ATGCAT 2 cut(s) 1977, 2317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.