Rroxscaffold_7G00168480

Electron transfer DM13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014477
Physical Location & Seq
Reverse (-)
9345920 .. 9349513
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168480.1

Sequence Viewer

Length: 2730 bp
ATGCCTCGCAAGCCCACCGCCACCATCTTCCTAGGGTTTCTCTTCCTCCTCCTCCTCCTCCTTACGTTCTGCCATGCCGATCCGGGTTCCAATTGCCTCAAAACCAGCCCTCTCGTCAACTTGGAATCCCAATTCAAAATGCTCCAGCACCAGCTCAGAGGCTCCGTTAAGATACTCGACGATTGCTCCTTCCAGGTTTCCAATTTCGACATGCTCTCCGGCTCCGACGTCCACTGGTGGGGCGCCGTCGCCCCCGATTTCAATAATCTCACCGCCGGCTTCGTAATCTCCGACCAGAAGCTCAACGAGACGTACAAAAGCGCGAGCTTCACTGTGCGTCTGAGGGACAATGTCACCTGGGATCAGATCCAAGTCCTCGCCGTCTGGGACCTCCCCACCTCCTCCGACTTCGGTCACATCGTGCTCCGGGATGTAGTAAACAGATCGTCCGGCAGCTCCGATTTGGCTCCTTCTCCTGCGCCGGCGAGCGATTCAGGGAATGGGACCGGTCAGGTTCACACTGAGCCGACTATGTTGGTGAATTGCAAGAGTTTATCCGACGATTTTAGGGTTAGATGGACGCTGCGTCCTGAGGAGAATGTGATTGACATTGGGCTGGAGGCTGCCACCGGGTCGACGAATTACATGGCTTTCGGGTGGGCTCGCCCGAATATCACACACCAGCTTATGCTCGGAGCTGACGTGGCCGTCGCGGGATTCAAGGAGGACGGAATGCCGTTTGTGGATGATTTTTACATCACAAAGTACAGCGAGTGCACCGTGTACAAGGACGGCTCCGTCAAAGGGGTGTGCCCCGATACAAGATACGAAGGGACGGCCCCGAATGGCTTGGTGAACAATACCAAATTGGTTTACGGCCACCGGAGGGACGCCGTGTCGTTTATTAGGTACCAGAGGCCGTTGGAATCAGCTGATAAAAAGTATGATTTGGCGGTGAAGCCGACCGAGAAAAGGACGGTGATTTGGGCCGTGGGGCCGATCAGGCCACCGGATACTCTTCAGCCTTACTATCTTCCCCAAAACCATGGGGGGCCCCAGGATGTGGTTTATGGCCATTTGGAGCTGAATGTGTCTGAGCATGTGGATGACTGTTATGGTCCTATAGAGGCCGATGACAAGGAGGATCAGCACCTCATTATTGCGGATGCAAAGGCCCCGCTTGTGGTTACTTCCGGGCAGGCAGTGCATTATCCAGACCCTCCGAACCCTTCAAAGGTTCTTTACATTAACAAGAAAGAGGCTCCGGTGTTGAGAGTCGAAAGAGGGGTGCCGGTCACGTTTTCAATACAAGCTGGGCATGATGTTGCTCTCTACATTACTTCAGATCCTCTTGGTGGGAATGCTACACTGAGGAATGCAAGCGAGACTGTTTATGCTGGAGGACCAGAAGCTCAAGGAGTTCAAGCCAGTCCCAAGGAGTTAATTTGGGCACCAGACAGGAATACCCCAGATCTAGTGTACTATCAATCTCTTTATGACCAGAAAATGGGATGGAAGGTACAGGTGGTTGATGGGGGTCTGTCAGATATGTATAATAACAGTGTGGTTTTGGATGATCAGCAAGTTACCTTATTTTGGACACTGGCACATGATTCTATATCTATTGCAGTCCGGGGTGAGAAGAAAAGTGGTTTCGTGGCAATAGGATTTGGTAGGGGAATGGTGAACTGCTATGCTTATGTGGGTTGGATTGATAATATTGGCAAAGGGCGGGTAAATACTTACTGGATTGATGGAAAGGATGCCTCGAGTGTGCATCCAACACATGAGAATTTGACATATGTGAGGTGCAGGTCAGAAAATGGGATCATTACGTTTGAGTTCACTCGTCCTTTGAAACCATCATGTGGTAAGAGTGATAAGCCCGAGTGTAAAAACATAATTGATCCAACTACTCCTCTTAAAATTATATGGGCAATGGGTGCTACATGGACCGATGATCATCTTAGTGATCAAAATATGCATTTTGCTACCAGCAGTAGGCCTATAAGGGTGCTGCTTATGCGTGGTTCTGCAGAGGCAGAGCAGGATTTACAGCCAGTATTAGCAGTGCATGGATTTATGATGTTTCTCGCTTGGGCTATCTTGCTTCCTGGTGGAATACTGGCGGCTAGATACTTAAAACATGTTAAGGGTGATGGTTGGTACCGGATTCATGTATACTTGCAGTACTCAGGTTTGGTAATCGTTCTACTGGCCCTTCTTTTTGCCGTTGCTGAGCTCCGTGGTTTCTTTTTCGGCTCATTACATGTTAAATTTGGAACTGCGGCTATATTTTTGGTTTGTATGCAACCAGTGAATGCATACCTAAGGCCAAAAAGACCAAATAATGGAGAGCAGGTTTCCTCTAAAAGGCTTCTATGGGAGTATCTTCATGTGATCGGGGGCAGATCTGCCATTGTAGTAGGTTTTGGAGCACTTTTCACAGGACTGAAGCATTTAGGTGATAGATATGGCGGCGAAAATGTTGATGGACTAAATTTAGCTTTGATAGTTTGGTTCTTGATCTGTGCATTGATAGTAATATATCTTGAATACTATGAAAGGCAAAGGAGGAGGAATAGAAGTATTGGCAGAAGCAATTGGGTGCTGGGGAACGTTGAGGAGGATGACTCTGTTGATTTGTTGAGCCCAAATGGAATACATTCAGAGAAAGAATCACATACATCAGGAAGAATGGAAGTTCAATTAGAGCCTCTGAACAGATAG

Protein Analysis

909

Amino Acids

101.05

Weight (kDa)

6.07

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DM13 PF10517 44 - 141 5.4e-15 Electron transfer DM13
DOMON PF03351 187 - 332 7.1e-12 DOMON domain
At5g54830 PF25489 386 - 511 4.8e-70 At5g54830-like domain
DOMON PF03351 525 - 648 6.3e-25 DOMON domain
Cytochrom_C_asm PF01578 688 - 855 6.5e-06 Cytochrome C assembly protein
Cytochrom_B561 PF03188 691 - 819 5.9e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54830
malus_domestica MD08G1058600.v1.1 MD15G1037900.v1.1
prunus_persica Prupe.1G391800_v2.0.a1
pyrus_communis pycom08g04850 pycom15g03510
rosa_chinensis RchiOBHm_Chr6g0299641
rosa_laevigata RLG00000011400
rosa_multiflora Rmu_co8233929.1_g000001 Rmu_co8458799.1_g000001 Rmu_sc0002895.1_g000005
rosa_roxburghii Rroxscaffold_7G00168480
rosa_rugosa Rorug06G0291300
rosa_samantha Rh6BG410500 Rh6CG416200 Rh6DG403400
rosa_wichuraiana Rw6G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 707, 797
AatII GACGTC 1 cut(s) 231
Acc36I ACCTGC 2 cut(s) 1803, 2350
Acc65I GGTACC 2 cut(s) 909, 2166
AccB1I GGYRCC 5 cut(s) 242, 909, 1288, 1450, 2166
AccB7I CCANNNNNTGG 4 cut(s) 1063, 1507, 1868, 2351
AccI GTMKAC 2 cut(s) 635, 2181
AccII CGCG 2 cut(s) 323, 713
AclI AACGTT 1 cut(s) 2619
AclWI GGATC 7 cut(s) 74, 361, 369, 1152, 1340, 1835, 1901
AcoI YGGCCR 3 cut(s) 705, 877, 1072
AcsI RAATTY 3 cut(s) 1792, 2276, 2500
AcuI CTGAAG 3 cut(s) 1004, 1326, 2474
AcyI GRCGYC 3 cut(s) 228, 243, 891
AdeI CACNNNGTG 1 cut(s) 421
AfaI GTAC 8 cut(s) 314, 767, 785, 911, 1481, 1521, 2168, 2192
AflIII ACRYGT 2 cut(s) 2146, 2269
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 9 cut(s) 136, 262, 721, 1233, 1305, 1424, 1858, 2555, 2708
AhdI GACNNNNNGTC 2 cut(s) 585, 895
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 4 cut(s) 192, 356, 1056, 2113
Alw21I GWGCWC 4 cut(s) 426, 779, 2244, 2440
Alw26I GTCTC 2 cut(s) 302, 1379
Alw44I GTGCAC 1 cut(s) 775
AlwI GGATC 7 cut(s) 74, 361, 369, 1152, 1340, 1835, 1901
Ama87I CYCGRG 2 cut(s) 1768, 1886
ApaI GGGCCC 1 cut(s) 1056
ApaLI GTGCAC 1 cut(s) 775
ApeKI GCWGC 4 cut(s) 453, 583, 623, 2017
ApoI RAATTY 3 cut(s) 1792, 2276, 2500
AsiGI ACCGGT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 2665
Asp718I GGTACC 2 cut(s) 909, 2166
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 3 cut(s) 245, 323, 481
AsuC2I CCSGG 5 cut(s) 84, 428, 631, 1195, 1634
AvaI CYCGRG 2 cut(s) 1768, 1886
AvaII GGWCC 5 cut(s) 388, 504, 1118, 1403, 1953
AvrII CCTAGG 1 cut(s) 31
AxyI CCTNAGG 2 cut(s) 591, 2330
BaeGI GKGCMC 4 cut(s) 779, 815, 1056, 1453
BalI TGGCCA 1 cut(s) 1074
BanI GGYRCC 5 cut(s) 242, 909, 1288, 1450, 2166
BanII GRGCYC 4 cut(s) 664, 1056, 2244, 2654
Bbv12I GWGCWC 4 cut(s) 426, 779, 2244, 2440
BbvI GCAGC 4 cut(s) 465, 570, 610, 2004
BccI CCATC 8 cut(s) 32, 570, 1506, 1526, 1748, 1870, 2153, 2486
BciT130I CCWGG 4 cut(s) 194, 358, 1058, 2115
BciVI GTATCC 1 cut(s) 1006
BclI TGATCA 3 cut(s) 1576, 1960, 1972
BcnI CCSGG 5 cut(s) 84, 428, 631, 1195, 1634
BcoDI GTCTC 2 cut(s) 302, 1379
BfaI CTAG 3 cut(s) 32, 1475, 2133
BfmI CTRYAG 2 cut(s) 1122, 2034
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 2 cut(s) 1803, 2350
BfuI GTATCC 1 cut(s) 1006
BglI GCCNNNNNGGC 1 cut(s) 1003
BglII AGATCT 2 cut(s) 1471, 2411
BisI GCNGC 7 cut(s) 454, 584, 624, 2018, 2130, 2289, 2479
BlnI CCTAGG 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 2238
BlsI GCNGC 7 cut(s) 455, 585, 625, 2019, 2131, 2290, 2480
BmcAI AGTACT 1 cut(s) 2192
Bme1390I CCNGG 9 cut(s) 84, 194, 358, 428, 631, 1058, 1195, 1634, 2115
Bme18I GGWCC 5 cut(s) 388, 504, 1118, 1403, 1953
BmeRI GACNNNNNGTC 2 cut(s) 585, 895
BmeT110I CYCGRG 2 cut(s) 1768, 1886
BmgBI CACGTC 1 cut(s) 703
BmrFI CCNGG 9 cut(s) 84, 194, 358, 428, 631, 1058, 1195, 1634, 2115
BmsI GCATC 3 cut(s) 1156, 1753, 1786
BoxI GACNNNNGTC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 2618, 2650
BpmI CTGGAG 3 cut(s) 128, 638, 1419
Bpu1102I GCTNAGC 1 cut(s) 2238
BpuEI CTTGAG 1 cut(s) 1398
BpuMI CCSGG 5 cut(s) 84, 428, 631, 1195, 1634
BsaBI GATNNNNATC 1 cut(s) 1962
BsaHI GRCGYC 3 cut(s) 228, 243, 891
BsaJI CCNNGG 8 cut(s) 31, 357, 990, 1045, 1056, 1434, 1633, 2245
BsaWI WCCGGW 5 cut(s) 506, 882, 1009, 1264, 2169
BsaXI ACNNNNNCTCC 8 cut(s) 170, 200, 200, 230, 687, 717, 2346, 2376
Bse118I RCCGGY 4 cut(s) 275, 481, 506, 1291
Bse1I ACTGG 8 cut(s) 239, 1428, 1608, 1751, 2060, 2130, 2220, 2315
Bse21I CCTNAGG 2 cut(s) 591, 2330
Bse3DI GCAATG 1 cut(s) 1944
Bse8I GATNNNNATC 1 cut(s) 1962
BseBI CCWGG 4 cut(s) 194, 358, 1058, 2115
BseDI CCNNGG 8 cut(s) 31, 357, 990, 1045, 1056, 1434, 1633, 2245
BseJI GATNNNNATC 1 cut(s) 1962
BseMI GCAATG 1 cut(s) 1944
BseMII CTCAG 8 cut(s) 169, 332, 513, 582, 1086, 1361, 2208, 2229
BseNI ACTGG 8 cut(s) 239, 1428, 1608, 1751, 2060, 2130, 2220, 2315
BseRI GAGGAG 9 cut(s) 38, 41, 44, 47, 391, 608, 1908, 2590, 2639
BseSI GKGCMC 4 cut(s) 779, 815, 1056, 1453
BseXI GCAGC 4 cut(s) 465, 570, 610, 2004
BseYI CCCAGC 2 cut(s) 1313, 2611
BsgI GTGCAG 1 cut(s) 1831
Bsh1236I CGCG 2 cut(s) 323, 713
Bsh1285I CGRYCG 1 cut(s) 966
BshNI GGYRCC 5 cut(s) 242, 909, 1288, 1450, 2166
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 966
BsiHKAI GWGCWC 4 cut(s) 426, 779, 2244, 2440
BsiHKCI CYCGRG 2 cut(s) 1768, 1886
BslFI GGGAC 6 cut(s) 359, 401, 517, 847, 902, 1416
BsmAI GTCTC 2 cut(s) 302, 1379
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 6 cut(s) 359, 401, 517, 847, 902, 1416
BsmI GAATGC 4 cut(s) 738, 1366, 1381, 2326
BsoBI CYCGRG 2 cut(s) 1768, 1886
Bsp120I GGGCCC 1 cut(s) 1052
Bsp1286I GDGCHC 9 cut(s) 426, 664, 779, 815, 1056, 1453, 2244, 2440, 2654
Bsp1407I TGTACA 1 cut(s) 783
Bsp1720I GCTNAGC 1 cut(s) 2238
Bsp19I CCATGG 1 cut(s) 1045
BspCNI CTCAG 8 cut(s) 168, 333, 514, 583, 1087, 1362, 2207, 2230
BspFNI CGCG 2 cut(s) 323, 713
BspMAI CTGCAG 1 cut(s) 2038
BspMI ACCTGC 2 cut(s) 1803, 2350
BspPI GGATC 7 cut(s) 74, 361, 369, 1152, 1340, 1835, 1901
BspT107I GGYRCC 5 cut(s) 242, 909, 1288, 1450, 2166
BsrDI GCAATG 1 cut(s) 1944
BsrFI RCCGGY 4 cut(s) 275, 481, 506, 1291
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 8 cut(s) 239, 1428, 1608, 1751, 2060, 2130, 2220, 2315
BssAI RCCGGY 4 cut(s) 275, 481, 506, 1291
BssECI CCNNGG 8 cut(s) 31, 357, 990, 1045, 1056, 1434, 1633, 2245
BssNAI GTATAC 1 cut(s) 2182
BssNI GRCGYC 3 cut(s) 228, 243, 891
BssT1I CCWWGG 3 cut(s) 31, 1045, 1434
Bst1107I GTATAC 1 cut(s) 2182
Bst2UI CCWGG 4 cut(s) 194, 358, 1058, 2115
Bst4CI ACNGT 6 cut(s) 334, 781, 979, 1112, 1390, 1562
Bst6I CTCTTC 2 cut(s) 47, 1023
BstACI GRCGYC 3 cut(s) 228, 243, 891
BstAPI GCANNNNNTGC 2 cut(s) 1204, 1943
BstAUI TGTACA 1 cut(s) 783
BstC8I GCNNGC 8 cut(s) 11, 277, 325, 483, 487, 664, 1200, 1381
BstDSI CCRYGG 3 cut(s) 990, 1045, 2245
BstENI CCTNNNNNAGG 1 cut(s) 2371
BstFNI CGCG 2 cut(s) 323, 713
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 245, 323, 481
BstMAI GTCTC 2 cut(s) 302, 1379
BstMCI CGRYCG 1 cut(s) 966
BstMWI GCNNNNNNNGC 6 cut(s) 10, 704, 1003, 1204, 1943, 2023
BstNI CCWGG 4 cut(s) 194, 358, 1058, 2115
BstNSI RCATGY 4 cut(s) 214, 1103, 2150, 2273
BstPAI GACNNNNGTC 1 cut(s) 411
BstSCI CCNGG 9 cut(s) 82, 192, 356, 426, 629, 1056, 1193, 1632, 2113
BstSFI CTRYAG 2 cut(s) 1122, 2034
BstSLI GKGCMC 4 cut(s) 779, 815, 1056, 1453
BstUI CGCG 2 cut(s) 323, 713
BstV1I GCAGC 4 cut(s) 465, 570, 610, 2004
BstX2I RGATCY 4 cut(s) 366, 1345, 1471, 2411
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 4 cut(s) 366, 1345, 1471, 2411
BstZ17I GTATAC 1 cut(s) 2182
Bsu36I CCTNAGG 2 cut(s) 591, 2330
BsuI GTATCC 1 cut(s) 1006
BtgI CCRYGG 3 cut(s) 990, 1045, 2245
BtrI CACGTC 1 cut(s) 703
BtsI GCAGTG 2 cut(s) 1209, 2076
BtsIMutI CAGTG 9 cut(s) 232, 330, 519, 1209, 1367, 1567, 1601, 2076, 2322
BveI ACCTGC 2 cut(s) 1803, 2350
Cac8I GCNNGC 8 cut(s) 11, 277, 325, 483, 487, 664, 1200, 1381
CfoI GCGC 3 cut(s) 245, 323, 481
Cfr10I RCCGGY 4 cut(s) 275, 481, 506, 1291
CseI GACGC 4 cut(s) 326, 575, 589, 899
Csp6I GTAC 8 cut(s) 313, 766, 784, 910, 1480, 1520, 2167, 2191
CspAI ACCGGT 1 cut(s) 506
CviQI GTAC 8 cut(s) 313, 766, 784, 910, 1480, 1520, 2167, 2191
DinI GGCGCC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 421
DrdI GACNNNNNNGTC 2 cut(s) 707, 797
DriI GACNNNNNGTC 2 cut(s) 585, 895
DseDI GACNNNNNNGTC 2 cut(s) 707, 797
EaeI YGGCCR 3 cut(s) 705, 877, 1072
Eam1104I CTCTTC 2 cut(s) 47, 1023
Eam1105I GACNNNNNGTC 2 cut(s) 585, 895
EarI CTCTTC 2 cut(s) 47, 1023
Ecl136II GAGCTC 1 cut(s) 2242
Eco130I CCWWGG 3 cut(s) 31, 1045, 1434
Eco147I AGGCCT 1 cut(s) 2005
Eco24I GRGCYC 4 cut(s) 664, 1056, 2244, 2654
Eco47I GGWCC 5 cut(s) 388, 504, 1118, 1403, 1953
Eco53kI GAGCTC 1 cut(s) 2242
Eco57I CTGAAG 3 cut(s) 1004, 1326, 2474
Eco81I CCTNAGG 2 cut(s) 591, 2330
Eco88I CYCGRG 2 cut(s) 1768, 1886
EcoICRI GAGCTC 1 cut(s) 2242
EcoNI CCTNNNNNAGG 1 cut(s) 2371
EcoO109I RGGNCCY 4 cut(s) 388, 1052, 1053, 1174
EcoRII CCWGG 4 cut(s) 192, 356, 1056, 2113
EcoT14I CCWWGG 3 cut(s) 31, 1045, 1434
EcoT22I ATGCAT 2 cut(s) 1986, 2326
EcoT38I GRGCYC 4 cut(s) 664, 1056, 2244, 2654
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 3 cut(s) 31, 1045, 1434
Esp3I CGTCTC 1 cut(s) 302
FaqI GGGAC 6 cut(s) 359, 401, 517, 847, 902, 1416
FauI CCCGC 3 cut(s) 706, 1185, 1725
FauNDI CATATG 1 cut(s) 1801
FbaI TGATCA 3 cut(s) 1576, 1960, 1972
FblI GTMKAC 2 cut(s) 635, 2181
Fnu4HI GCNGC 7 cut(s) 454, 584, 624, 2018, 2130, 2289, 2479
FriOI GRGCYC 4 cut(s) 664, 1056, 2244, 2654
Fsp4HI GCNGC 7 cut(s) 454, 584, 624, 2018, 2130, 2289, 2479
FspBI CTAG 3 cut(s) 32, 1475, 2133
GlaI GCGC 3 cut(s) 244, 322, 480
GluI GCNGC 7 cut(s) 454, 584, 624, 2018, 2130, 2289, 2479
GsaI CCCAGC 2 cut(s) 1317, 2615
GsuI CTGGAG 3 cut(s) 128, 638, 1419
HaeII RGCGCY 1 cut(s) 246
HgaI GACGC 4 cut(s) 326, 575, 589, 899
HhaI GCGC 3 cut(s) 245, 323, 481
Hin1I GRCGYC 3 cut(s) 228, 243, 891
Hin6I GCGC 3 cut(s) 243, 321, 479
HinP1I GCGC 3 cut(s) 243, 321, 479
HincII GTYRAC 2 cut(s) 118, 636
HindII GTYRAC 2 cut(s) 118, 636
HinfI GANTC 9 cut(s) 125, 491, 717, 926, 1275, 1613, 2173, 2633, 2678
Hpy188III TCNNGA 5 cut(s) 590, 1214, 2524, 2552, 2691
Hpy99I CGWCG 6 cut(s) 182, 230, 251, 563, 640, 713
HpyAV CCTTC 6 cut(s) 199, 480, 824, 1239, 1510, 2231
HpyCH4III ACNGT 6 cut(s) 334, 781, 979, 1112, 1390, 1562
HpyCH4IV ACGT 7 cut(s) 65, 228, 311, 702, 1298, 1835, 2619
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 704, 1003, 1204, 1943, 2023
HpySE526I ACGT 7 cut(s) 65, 228, 311, 702, 1298, 1835, 2619
Hsp92I GRCGYC 3 cut(s) 228, 243, 891
HspAI GCGC 3 cut(s) 243, 321, 479
KasI GGCGCC 1 cut(s) 242
KpnI GGTACC 2 cut(s) 913, 2170
KroI GCCGGC 2 cut(s) 275, 481
KroNI GCCGGC 2 cut(s) 277, 483
Ksp22I TGATCA 3 cut(s) 1576, 1960, 1972
Lsp1109I GCAGC 4 cut(s) 465, 570, 610, 2004
LweI GCATC 3 cut(s) 1156, 1753, 1786
MaeI CTAG 3 cut(s) 32, 1475, 2133
MaeII ACGT 7 cut(s) 65, 228, 311, 702, 1298, 1835, 2619
MaeIII GTNAC 5 cut(s) 352, 413, 1186, 1294, 1585
MboII GAAGA 7 cut(s) 19, 34, 1010, 1025, 1654, 2384, 2706
MfeI CAATTG 2 cut(s) 91, 2602
MflI RGATCY 4 cut(s) 366, 1345, 1471, 2411
MhlI GDGCHC 9 cut(s) 426, 664, 779, 815, 1056, 1453, 2244, 2440, 2654
MlsI TGGCCA 1 cut(s) 1074
MluNI TGGCCA 1 cut(s) 1074
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 2 cut(s) 1284, 2627
MmeI TCCRAC 8 cut(s) 249, 315, 429, 582, 903, 1688, 1805, 1934
Mox20I TGGCCA 1 cut(s) 1074
Mph1103I ATGCAT 2 cut(s) 1986, 2326
MreI CGCCGGCG 1 cut(s) 481
MroNI GCCGGC 2 cut(s) 275, 481
MroXI GAANNNNTTC 1 cut(s) 2665
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 7 cut(s) 168, 1248, 1442, 1923, 2141, 2151, 2274
MslI CAYNNNNRTG 3 cut(s) 1104, 1968, 2463
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 932
MspR9I CCNGG 9 cut(s) 84, 194, 358, 428, 631, 1058, 1195, 1634, 2115
MunI CAATTG 2 cut(s) 91, 2602
Mva1269I GAATGC 4 cut(s) 738, 1366, 1381, 2326
MvaI CCWGG 4 cut(s) 194, 358, 1058, 2115
MvnI CGCG 2 cut(s) 323, 713
MwoI GCNNNNNNNGC 6 cut(s) 10, 704, 1003, 1204, 1943, 2023
NaeI GCCGGC 2 cut(s) 277, 483
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 5 cut(s) 84, 428, 631, 1195, 1634
NcoI CCATGG 1 cut(s) 1045
NdeI CATATG 1 cut(s) 1801
NgoMIV GCCGGC 2 cut(s) 275, 481
NmuCI GTSAC 3 cut(s) 352, 413, 1294
NsiI ATGCAT 2 cut(s) 1986, 2326
NspI RCATGY 4 cut(s) 214, 1103, 2150, 2273
PaeR7I CTCGAG 1 cut(s) 1768
PceI AGGCCT 1 cut(s) 2005
PciI ACATGT 2 cut(s) 2146, 2269
PcsI WCGNNNNNNNCGW 3 cut(s) 288, 417, 699
PctI GAATGC 4 cut(s) 738, 1366, 1381, 2326
PdiI GCCGGC 2 cut(s) 277, 483
PdmI GAANNNNTTC 1 cut(s) 2665
PfeI GAWTC 7 cut(s) 125, 491, 717, 926, 1613, 2173, 2678
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 4 cut(s) 1063, 1507, 1868, 2351
PfoI TCCNGGA 1 cut(s) 426
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 7 cut(s) 455, 585, 625, 2019, 2131, 2290, 2480
PleI GAGTC 2 cut(s) 1283, 2627
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 2 cut(s) 1283, 2627
PpuMI RGGWCCY 1 cut(s) 388
PscI ACATGT 2 cut(s) 2146, 2269
PshAI GACNNNNGTC 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 2244
Psp1406I AACGTT 1 cut(s) 2619
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 4 cut(s) 192, 356, 1056, 2113
PspFI CCCAGC 2 cut(s) 1313, 2611
PspGI CCWGG 4 cut(s) 192, 356, 1056, 2113
PspOMI GGGCCC 1 cut(s) 1052
PspPPI RGGWCCY 1 cut(s) 388
PspXI VCTCGAGB 1 cut(s) 1768
PstI CTGCAG 1 cut(s) 2038
PsuI RGATCY 4 cut(s) 366, 1345, 1471, 2411
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 8 cut(s) 314, 767, 785, 911, 1481, 1521, 2168, 2192
RsaNI GTAC 8 cut(s) 313, 766, 784, 910, 1480, 1520, 2167, 2191
RseI CAYNNNNRTG 3 cut(s) 1104, 1968, 2463
SacI GAGCTC 1 cut(s) 2244
SalI GTCGAC 1 cut(s) 634
SaqAI TTAA 7 cut(s) 168, 1248, 1442, 1923, 2141, 2151, 2274
SatI GCNGC 7 cut(s) 454, 584, 624, 2018, 2130, 2289, 2479
ScaI AGTACT 1 cut(s) 2192
SchI GAGTC 2 cut(s) 1284, 2627
ScrFI CCNGG 9 cut(s) 84, 194, 358, 428, 631, 1058, 1195, 1634, 2115
SduI GDGCHC 9 cut(s) 426, 664, 779, 815, 1056, 1453, 2244, 2440, 2654
SfaNI GCATC 3 cut(s) 1156, 1753, 1786
SfcI CTRYAG 2 cut(s) 1122, 2034
SfiI GGCCNNNNNGGCC 1 cut(s) 1003
SfoI GGCGCC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 1768
SgrAI CRCCGGYG 1 cut(s) 481
SinI GGWCC 5 cut(s) 388, 504, 1118, 1403, 1953
SlaI CTCGAG 1 cut(s) 1768
SmiMI CAYNNNNRTG 3 cut(s) 1104, 1968, 2463
SmlI CTYRAG 2 cut(s) 1413, 1768
SmoI CTYRAG 2 cut(s) 1413, 1768
SseBI AGGCCT 1 cut(s) 2005
SspDI GGCGCC 1 cut(s) 242
SspI AATATT 1 cut(s) 1720
SspMI CTAG 3 cut(s) 32, 1475, 2133
SstI GAGCTC 1 cut(s) 2244
StuI AGGCCT 1 cut(s) 2005
StyD4I CCNGG 9 cut(s) 82, 192, 356, 426, 629, 1056, 1193, 1632, 2113
StyI CCWWGG 3 cut(s) 31, 1045, 1434
TaaI ACNGT 6 cut(s) 334, 781, 979, 1112, 1390, 1562
TaiI ACGT 7 cut(s) 68, 231, 314, 705, 1301, 1838, 2622
TaqI TCGA 5 cut(s) 177, 207, 635, 1278, 1769
TaqII GACCGA 3 cut(s) 401, 980, 1970
TatI WGTACW 4 cut(s) 765, 783, 1479, 2190
TauI GCSGC 3 cut(s) 2132, 2291, 2481
TfiI GAWTC 7 cut(s) 125, 491, 717, 926, 1613, 2173, 2678
Tru1I TTAA 7 cut(s) 168, 1248, 1442, 1923, 2141, 2151, 2274
Tru9I TTAA 7 cut(s) 168, 1248, 1442, 1923, 2141, 2151, 2274
TscAI CASTG 9 cut(s) 239, 337, 526, 1209, 1374, 1567, 1608, 2076, 2322
TseFI GTSAC 3 cut(s) 352, 413, 1294
TseI GCWGC 4 cut(s) 453, 583, 623, 2017
Tsp45I GTSAC 3 cut(s) 352, 413, 1294
TspDTI ATGAA 3 cut(s) 2165, 2384, 2577
TspGWI ACGGA 4 cut(s) 154, 744, 787, 2234
TspRI CASTG 9 cut(s) 239, 337, 526, 1209, 1374, 1567, 1608, 2076, 2322
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 4 cut(s) 1063, 1507, 1868, 2351
VneI GTGCAC 1 cut(s) 775
VpaK11BI GGWCC 5 cut(s) 388, 504, 1118, 1403, 1953
XagI CCTNNNNNAGG 1 cut(s) 2371
XapI RAATTY 3 cut(s) 1792, 2276, 2500
XceI RCATGY 4 cut(s) 214, 1103, 2150, 2273
XhoI CTCGAG 1 cut(s) 1768
XmaJI CCTAGG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 635, 2181
XmnI GAANNNNTTC 1 cut(s) 2665
XspI CTAG 3 cut(s) 32, 1475, 2133
ZraI GACGTC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 2192
Zsp2I ATGCAT 2 cut(s) 1986, 2326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.