Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Forward (+)

11661461 .. 11669859

Gene Structure 8399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGCTTTTGTTTGCACCGGCTTCCCCTGTGGCAGATACGAACCGACGCAATTTTCGCAATTCGAGGCAACTTTCATCAGGATTATTTGGCTCACCACTCGAGGCACAGACGAACAGAGGAAGGCCTAGTTCCCAGCAAAGGTTAGATCAGGGTATTTTGGAGGAAGTGGACGAAATTTTTAATTTTCCAGCGGATCGAGGACGAAGGGTACAGGAGCAAAGTGAAAGTGAACAAGAACGAAGGGCACAGGAGCAAGGTGAAAGTGAACAAGGACGAAGGGCAAAGGAGCAAGGTGAACGTGGACAATTAGAAAGTACGTGGCCGGAACAAGGACGAAGGGCAAAGGAGCAAGGTGAACGTGGACAATTAGAAAGGTCACTAGAGAAAGCGAACGCTGCAATGGCTGCATGCCAACGCTCCTTACGTATAGTGAGTAGCATTCCATACGTTGCTTTGAGAATTGCTGGGACTGTGGATCCTAAAGTAGAGTTGTGGGCTGCAGAGAAAGAAGGGAATGTTATTTTACCTAGTAGTATGCTTCATATGTTTTGCATTGTTCTTTGGCCTGACTCTGGATGGGAGCCAGTTTCACTCACAGATCTGATTACTTCTGGTTCAGTTAAAAAGGTTTACAGAAAGGCCACATTGTTTGTCCATCCAGATAGGTTCAACAGAAAGGAGCTAGAAGCTTGGACCAAGTTCAACAAGGAGGAACTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.39

Weight (kDa)

7.77

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	3 cut(s)	204, 473, 486
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	2 cut(s)	213, 319
AfiI	CCNNNNNNNGG	3 cut(s)	141, 332, 575
AgsI	TTSAA	2 cut(s)	673, 706
AluBI	AGCT	2 cut(s)	685, 692
AluI	AGCT	2 cut(s)	685, 692
AlwI	GGATC	3 cut(s)	204, 473, 486
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	4 cut(s)	125, 323, 566, 642
ApeKI	GCWGC	3 cut(s)	398, 407, 500
ApoI	RAATTY	1 cut(s)	177
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspS9I	GGNCC	1 cut(s)	696
AsuHPI	GGTGA	4 cut(s)	87, 272, 308, 368
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	385, 394, 487
BccI	CCATC	2 cut(s)	573, 666
BfaI	CTAG	4 cut(s)	129, 383, 531, 686
BfmI	CTRYAG	1 cut(s)	501
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	3 cut(s)	399, 408, 501
BlsI	GCNGC	3 cut(s)	400, 409, 502
Bme18I	GGWCC	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	480, 585
BsaAI	YACGTR	2 cut(s)	321, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 332, 575
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	408
BseGI	GGATG	2 cut(s)	584, 658
BseLI	CCNNNNNNNGG	3 cut(s)	141, 332, 575
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	385, 394, 487
BseYI	CCCAGC	2 cut(s)	135, 467
BshFI	GGCC	4 cut(s)	127, 325, 568, 644
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	20, 326
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	3 cut(s)	141, 332, 575
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	127, 325, 568, 644
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	148, 196, 478, 601
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	4 cut(s)	127, 325, 568, 644
BspLI	GGNNCC	2 cut(s)	480, 585
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	204, 473, 486
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	4 cut(s)	148, 196, 478, 601
Bst4CI	ACNGT	1 cut(s)	475
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	2 cut(s)	321, 428
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	584, 658
BstKTI	GATC	4 cut(s)	151, 199, 481, 604
BstMBI	GATC	4 cut(s)	148, 196, 478, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 398, 404, 407
BstNSI	RCATGY	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	250
BstSNI	TACGTA	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	385, 394, 487
BstX2I	RGATCY	2 cut(s)	478, 601
BstYI	RGATCY	2 cut(s)	478, 601
BsuRI	GGCC	4 cut(s)	127, 325, 568, 644
BtsCI	GGATG	2 cut(s)	584, 658
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	696
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	212, 318
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	2 cut(s)	212, 318
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	4 cut(s)	150, 198, 480, 603
DpnII	GATC	4 cut(s)	148, 196, 478, 601
EaeI	YGGCCR	1 cut(s)	323
Eco105I	TACGTA	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	101
FaeI	CATG	1 cut(s)	414
FaiI	YATR	6 cut(s)	412, 431, 448, 539, 546, 548
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	1 cut(s)	410
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	399, 408, 501
FokI	GGATG	2 cut(s)	591, 645
Fsp4HI	GCNGC	3 cut(s)	399, 408, 501
FspBI	CTAG	4 cut(s)	129, 383, 531, 686
GluI	GCNGC	3 cut(s)	399, 408, 501
GsaI	CCCAGC	2 cut(s)	139, 471
HaeIII	GGCC	4 cut(s)	127, 325, 568, 644
HapII	CCGG	2 cut(s)	20, 326
HgaI	GACGC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	2 cut(s)	20, 326
HphI	GGTGA	4 cut(s)	87, 272, 308, 368
Hpy166II	GTNNAC	8 cut(s)	172, 233, 269, 299, 305, 359, 365, 634
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	3 cut(s)	81, 576, 662
Hpy8I	GTNNAC	8 cut(s)	172, 233, 269, 299, 305, 359, 365, 634
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	6 cut(s)	117, 201, 237, 273, 333, 506
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	5 cut(s)	301, 320, 361, 427, 450
HpyCH4V	TGCA	5 cut(s)	17, 401, 410, 503, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 398, 404, 407
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	5 cut(s)	301, 320, 361, 427, 450
Hsp92II	CATG	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	148, 196, 478, 601
LmnI	GCTCC	7 cut(s)	217, 253, 289, 349, 425, 583, 682
Lsp1109I	GCAGC	3 cut(s)	385, 394, 487
MaeI	CTAG	4 cut(s)	129, 383, 531, 686
MaeII	ACGT	5 cut(s)	301, 320, 361, 427, 450
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	4 cut(s)	150, 198, 480, 603
MboI	GATC	4 cut(s)	148, 196, 478, 601
MflI	RGATCY	2 cut(s)	478, 601
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	52, 61, 177, 184, 308, 368, 462
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	60, 97, 113, 157, 194, 706
MseI	TTAA	2 cut(s)	183, 624
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	20, 326
Mva1269I	GAATGC	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	57, 398, 404, 407
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	4 cut(s)	148, 196, 478, 601
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	2 cut(s)	480, 585
NmuCI	GTSAC	1 cut(s)	378
NspI	RCATGY	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PctI	GAATGC	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	400, 409, 502
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	2 cut(s)	321, 428
PspFI	CCCAGC	2 cut(s)	135, 467
PspN4I	GGNNCC	2 cut(s)	480, 585
PspPI	GGNCC	1 cut(s)	696
PspXI	VCTCGAGB	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	478, 601
RsaI	GTAC	2 cut(s)	213, 319
RsaNI	GTAC	2 cut(s)	212, 318
SaqAI	TTAA	2 cut(s)	183, 624
SatI	GCNGC	3 cut(s)	399, 408, 501
Sau3AI	GATC	4 cut(s)	148, 196, 478, 601
Sau96I	GGNCC	1 cut(s)	696
SchI	GAGTC	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	696
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SnaBI	TACGTA	1 cut(s)	428
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	7 cut(s)	52, 61, 177, 184, 308, 368, 462
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	129, 383, 531, 686
StuI	AGGCCT	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	5 cut(s)	304, 323, 364, 430, 453
TaqI	TCGA	3 cut(s)	65, 102, 199
TasI	AATT	7 cut(s)	52, 61, 177, 184, 308, 368, 462
Tru1I	TTAA	2 cut(s)	183, 624
Tru9I	TTAA	2 cut(s)	183, 624
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	3 cut(s)	398, 407, 500
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	66, 533
VpaK11BI	GGWCC	1 cut(s)	696
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	4 cut(s)	129, 383, 531, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.