RLG00000011684

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004909
Physical Location & Seq
Forward (+)
11678603 .. 11679444
842 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011684

Sequence Viewer

Length: 534 bp
ATGGAGAAGCTACAAGTTCCTTCTTTGGGAGGGAGGCCCAAAAGGACAGTCTCAGAGCCAGAGCCAGAGCCAGAGCCCGAGCCCAAATCATATCAAACCACCGAGAGGCTCGAGTGTTCGTTTGGGGCTGTAGGAATACAATATCCTTTGTCAAAGTTCTACCAGCGGCGGCTTCAGACTTCCGGCCTTGTCTTCCTAAATCCACATGGGTCTACGGAGCTCCCATTCCGTTTCTGGTTGGTGATCTTAGAATTCTTCATGGCCAATTTCTCTGCTCGATCTGTCTGGATTTCATTCGATCAGCTGCAAGACGAGCTTTTGAGCAGGTACCCTATTGGCACTGACAAGGTTGTTCGTCGTCCAAAAACAAATGCAGATGGGTCTGAAATAGATTTGCAGTTTTGTCCTCAGATTTGCGAGCAATGGATCGAGAGAGTCTATAAGGAGAGTCGGGTGAGACGGCGAGAGCAGCTCAACATAACCGTGTTCTGCGGTTCCTTTGTGGTATTGAGGTGCAGGCGTGCGGCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.62

Weight (kDa)

8.88

Isoelectric Point (pI)

76.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 212
AciI CCGC 4 cut(s) 166, 169, 492, 524
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 26, 105
AluBI AGCT 5 cut(s) 10, 220, 304, 316, 472
AluI AGCT 5 cut(s) 10, 220, 304, 316, 472
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 55, 451
AlwI GGATC 1 cut(s) 434
Ama87I CYCGRG 2 cut(s) 77, 110
AoxI GGCC 3 cut(s) 35, 184, 261
ApeKI GCWGC 2 cut(s) 304, 469
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp718I GGTACC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 253, 466
AvaI CYCGRG 2 cut(s) 77, 110
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 327
BanII GRGCYC 3 cut(s) 78, 84, 222
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 291, 481
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 476
BcoDI GTCTC 2 cut(s) 55, 451
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 5 cut(s) 167, 170, 305, 470, 525
BlsI GCNGC 5 cut(s) 168, 171, 306, 471, 526
BmeT110I CYCGRG 2 cut(s) 77, 110
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 3 cut(s) 329, 496, 528
BpiI GAAGAC 1 cut(s) 184
BplI GAGNNNNNCTC 2 cut(s) 456, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 105
Bse3DI GCAATG 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 26, 105
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 66, 422
BseXI GCAGC 2 cut(s) 291, 481
BshFI GGCC 3 cut(s) 37, 186, 263
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 2 cut(s) 77, 110
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 26, 105
BsmAI GTCTC 2 cut(s) 55, 451
BsmBI CGTCTC 1 cut(s) 451
BsnI GGCC 3 cut(s) 37, 186, 263
BsoBI CYCGRG 2 cut(s) 77, 110
Bsp1286I GDGCHC 3 cut(s) 78, 84, 222
Bsp143I GATC 4 cut(s) 243, 278, 298, 426
BspACI CCGC 4 cut(s) 166, 169, 492, 524
BspANI GGCC 3 cut(s) 37, 186, 263
BspCNI CTCAG 2 cut(s) 65, 421
BspLI GGNNCC 3 cut(s) 329, 496, 528
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 428
BssMI GATC 4 cut(s) 243, 278, 298, 426
Bst4CI ACNGT 2 cut(s) 49, 484
BstC8I GCNNGC 3 cut(s) 419, 518, 522
BstDEI CTNAG 3 cut(s) 52, 247, 408
BstKTI GATC 4 cut(s) 246, 281, 301, 429
BstMAI GTCTC 2 cut(s) 55, 451
BstMBI GATC 4 cut(s) 243, 278, 298, 426
BstMWI GCNNNNNNNGC 2 cut(s) 313, 469
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 291, 481
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 3 cut(s) 37, 186, 263
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 419, 518, 522
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 206, 259, 531
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 52, 247, 408
DpnI GATC 4 cut(s) 245, 280, 300, 428
DpnII GATC 4 cut(s) 243, 278, 298, 426
EaeI YGGCCR 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 3 cut(s) 78, 84, 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 2 cut(s) 77, 110
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 251
EcoT38I GRGCYC 3 cut(s) 78, 84, 222
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 3 cut(s) 209, 262, 534
FaiI YATR 6 cut(s) 91, 207, 260, 441, 479, 532
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 3 cut(s) 205, 258, 530
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 5 cut(s) 167, 170, 305, 470, 525
FriOI GRGCYC 3 cut(s) 78, 84, 222
Fsp4HI GCNGC 5 cut(s) 167, 170, 305, 470, 525
GluI GCNGC 5 cut(s) 167, 170, 305, 470, 525
HaeIII GGCC 3 cut(s) 37, 186, 263
HapII CCGG 1 cut(s) 183
Hin1II CATG 3 cut(s) 209, 262, 534
HinfI GANTC 2 cut(s) 435, 448
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 253, 466
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 4 cut(s) 55, 177, 385, 411
Hpy188III TCNNGA 2 cut(s) 286, 430
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 49, 484
HpyCH4V TGCA 4 cut(s) 307, 374, 397, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 469
HpyF3I CTNAG 3 cut(s) 52, 247, 408
Hsp92II CATG 3 cut(s) 209, 262, 534
KpnI GGTACC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 243, 278, 298, 426
LmnI GCTCC 3 cut(s) 217, 225, 532
LpnPI CCDG 9 cut(s) 72, 78, 84, 176, 196, 220, 271, 310, 502
Lsp1109I GCAGC 2 cut(s) 291, 481
MalI GATC 4 cut(s) 245, 280, 300, 428
MboI GATC 4 cut(s) 243, 278, 298, 426
MboII GAAGA 2 cut(s) 184, 247
MhlI GDGCHC 3 cut(s) 78, 84, 222
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 2 cut(s) 251, 265
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 444, 457
MnlI CCTC 5 cut(s) 23, 27, 99, 417, 504
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 166, 304
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 313, 469
NdeII GATC 4 cut(s) 243, 278, 298, 426
NlaIII CATG 3 cut(s) 209, 262, 534
NlaIV GGNNCC 3 cut(s) 329, 496, 528
PaeR7I CTCGAG 1 cut(s) 110
PkrI GCNGC 5 cut(s) 168, 171, 306, 471, 526
PleI GAGTC 2 cut(s) 443, 456
PpsI GAGTC 2 cut(s) 443, 456
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 329, 496, 528
PspPI GGNCC 1 cut(s) 36
PspXI VCTCGAGB 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 5 cut(s) 167, 170, 305, 470, 525
Sau3AI GATC 4 cut(s) 243, 278, 298, 426
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 2 cut(s) 444, 457
SduI GDGCHC 3 cut(s) 78, 84, 222
SetI ASST 8 cut(s) 12, 222, 306, 318, 329, 351, 474, 515
SfcI CTRYAG 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 251, 265
SsiI CCGC 4 cut(s) 166, 169, 492, 524
SstI GAGCTC 1 cut(s) 222
TaaI ACNGT 2 cut(s) 49, 484
TaqI TCGA 4 cut(s) 111, 277, 297, 429
TasI AATT 2 cut(s) 251, 265
TauI GCSGC 3 cut(s) 169, 172, 527
TscAI CASTG 1 cut(s) 346
TseI GCWGC 2 cut(s) 304, 469
TspDTI ATGAA 2 cut(s) 247, 282
TspGWI ACGGA 2 cut(s) 218, 230
TspRI CASTG 1 cut(s) 346
XapI RAATTY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.