Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382091.1

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Forward (+)

58 .. 1173

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 662 bp

atggacgaattcggtgttttgaccgagagatttggcctgaaaccgcaaggcaaatcggcgccgatggccgcatccagaagagcaacacccaccaacaacccccaaacgacgtcgtatgcatcctcctccagatcttccgcaatttccaattccaattccaattccgcctacgcttcttttctcgacgatcaaaccggcttcttctcccaatcgagctctacccaaaacacggccggctccggcggattcaacgattacgtcggcatcttcagcggcggagtcactagacccgcacagcagcaatcccaaggctccgactttaatttggattccatgttttcgggttcgagtgccaatacgtcgtcgtttgacgacggctttggtgtgtttgggaactccggtggttcggtcaatagtaatgtgaaggatgatgactttttcgggtcgtttgcttcggctccgaacccgagtgcagctccgagcaatgacctgctgggtgatctcggtggagtagcaaggagattgcagagtacgagcaatagtaatagaaatgggaacacgaccggaacgccggcgaacaatgcagctgattctgatgatttgttacctggctttgctgttagcaatgcttccaatagtggaacttacacagaggaaagtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

22.67

Weight (kDa)

4.32

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	58
AciI	CCGC	8 cut(s)	44, 69, 138, 165, 243, 273, 276, 291
AcoI	YGGCCR	2 cut(s)	66, 231
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	2 cut(s)	59, 110
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	3 cut(s)	216, 476, 587
AluI	AGCT	3 cut(s)	216, 476, 587
Alw21I	GWGCWC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	3 cut(s)	34, 66, 231
ApeKI	GCWGC	3 cut(s)	298, 473, 584
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	310, 485, 596
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	2 cut(s)	246, 391
BciT130I	CCWGG	1 cut(s)	609
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	5 cut(s)	69, 274, 299, 474, 585
BlsI	GCNGC	5 cut(s)	70, 275, 300, 475, 586
Bme1390I	CCNGG	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	60, 238, 313, 459
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	80, 128, 273
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
BpmI	CTGGAG	1 cut(s)	112
BsaHI	GRCGYC	2 cut(s)	59, 110
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	2 cut(s)	398, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	3 cut(s)	194, 233, 571
Bse3DI	GCAATG	2 cut(s)	490, 631
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	3 cut(s)	71, 119, 433
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	490, 631
BseRI	GAGGAG	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	310, 485, 596
BseYI	CCCAGC	1 cut(s)	493
BsgI	GTGCAG	1 cut(s)	492
Bsh1285I	CGRYCG	2 cut(s)	234, 564
BshFI	GGCC	3 cut(s)	36, 68, 233
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	2 cut(s)	234, 564
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	6 cut(s)	195, 234, 240, 399, 564, 572
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	3 cut(s)	36, 68, 233
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	131, 187, 499
BspACI	CCGC	8 cut(s)	44, 69, 138, 165, 243, 273, 276, 291
BspANI	GGCC	3 cut(s)	36, 68, 233
BspLI	GGNNCC	4 cut(s)	60, 238, 313, 459
BspMI	ACCTGC	1 cut(s)	498
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	490, 631
BsrFI	RCCGGY	3 cut(s)	194, 233, 571
BssAI	RCCGGY	3 cut(s)	194, 233, 571
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	131, 187, 499
BssNI	GRCGYC	2 cut(s)	59, 110
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	609
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	2 cut(s)	59, 110
BstC8I	GCNNGC	2 cut(s)	235, 573
BstF5I	GGATG	3 cut(s)	71, 119, 433
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	3 cut(s)	134, 190, 502
BstMBI	GATC	3 cut(s)	131, 187, 499
BstMCI	CGRYCG	2 cut(s)	234, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 270, 581
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstV1I	GCAGC	3 cut(s)	310, 485, 596
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	36, 68, 233
BtsCI	GGATG	3 cut(s)	71, 119, 433
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	235, 573
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	3 cut(s)	194, 233, 571
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	1 cut(s)	531
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	3 cut(s)	133, 189, 501
DpnII	GATC	3 cut(s)	131, 187, 499
EaeI	YGGCCR	2 cut(s)	66, 231
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	3 cut(s)	154, 258, 291
Ecl136II	GAGCTC	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	218
Eco52I	CGGCCG	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	337
FaiI	YATR	2 cut(s)	117, 335
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	5 cut(s)	69, 274, 299, 474, 585
FokI	GGATG	3 cut(s)	58, 106, 440
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	69, 274, 299, 474, 585
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	5 cut(s)	69, 274, 299, 474, 585
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	36, 68, 233
HapII	CCGG	6 cut(s)	195, 234, 240, 399, 564, 572
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	59, 110
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	4 cut(s)	246, 279, 329, 590
HpaII	CCGG	6 cut(s)	195, 234, 240, 399, 564, 572
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	4 cut(s)	316, 462, 480, 595
Hpy188III	TCNNGA	3 cut(s)	75, 129, 182
Hpy99I	CGWCG	7 cut(s)	112, 115, 188, 263, 364, 367, 377
HpyAV	CCTTC	1 cut(s)	418
HpyCH4IV	ACGT	3 cut(s)	110, 258, 359
HpyCH4V	TGCA	4 cut(s)	119, 473, 526, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 270, 581
HpySE526I	ACGT	3 cut(s)	110, 258, 359
Hsp92I	GRCGYC	2 cut(s)	59, 110
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
KroI	GCCGGC	2 cut(s)	233, 571
KroNI	GCCGGC	2 cut(s)	235, 573
Kzo9I	GATC	3 cut(s)	131, 187, 499
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	4 cut(s)	242, 317, 463, 481
Lsp1109I	GCAGC	3 cut(s)	310, 485, 596
LweI	GCATC	3 cut(s)	80, 128, 273
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	3 cut(s)	110, 258, 359
MaeIII	GTNAC	2 cut(s)	280, 603
MalI	GATC	3 cut(s)	133, 189, 501
MboI	GATC	3 cut(s)	131, 187, 499
MboII	GAAGA	4 cut(s)	90, 126, 193, 259
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	6 cut(s)	8, 141, 148, 154, 160, 322
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	3 cut(s)	133, 136, 646
Mph1103I	ATGCAT	1 cut(s)	121
MreI	CGCCGGCG	1 cut(s)	571
MroNI	GCCGGC	2 cut(s)	233, 571
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	273, 587
MspI	CCGG	6 cut(s)	195, 234, 240, 399, 564, 572
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	65, 270, 581
NaeI	GCCGGC	2 cut(s)	235, 573
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	3 cut(s)	131, 187, 499
NgoMIV	GCCGGC	2 cut(s)	233, 571
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	4 cut(s)	60, 238, 313, 459
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	73
PdiI	GCCGGC	2 cut(s)	235, 573
PfeI	GAWTC	3 cut(s)	246, 329, 590
PkrI	GCNGC	5 cut(s)	70, 275, 300, 475, 586
PleI	GAGTC	1 cut(s)	287
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	4 cut(s)	60, 238, 313, 459
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	5 cut(s)	69, 274, 299, 474, 585
Sau3AI	GATC	3 cut(s)	131, 187, 499
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	8 cut(s)	113, 218, 261, 362, 478, 492, 589, 610
SfaNI	GCATC	3 cut(s)	80, 128, 273
SfoI	GGCGCC	1 cut(s)	60
SgrAI	CRCCGGYG	1 cut(s)	571
Sse9I	AATT	6 cut(s)	8, 141, 148, 154, 160, 322
SsiI	CCGC	8 cut(s)	44, 69, 138, 165, 243, 273, 276, 291
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	307
TaiI	ACGT	3 cut(s)	113, 261, 362
TaqI	TCGA	3 cut(s)	183, 212, 347
TaqII	GACCGA	2 cut(s)	38, 397
TasI	AATT	6 cut(s)	8, 141, 148, 154, 160, 322
TauI	GCSGC	2 cut(s)	71, 276
TfiI	GAWTC	3 cut(s)	246, 329, 590
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	298, 473, 584
Tsp45I	GTSAC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.