Rh4CG395000

Auxilin-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004909
Physical Location & Seq
Forward (+)
64482770 .. 64483144
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG395000.1

Sequence Viewer

Length: 375 bp
ATGTTTTCGGGTTCGGGTGCCAATACGTCGTTGTTTGACGACGGCTTTGATGTGTTTGGGAGCTCCGGTGGTTCGGTTAATAGTAATGTGGAGGAAGATGACTTTTTCGGGTCGTTTTCTTCGGCTCCGAAGCAGAGTGCTGCTCCGAGCAATGACCTGCTGGGTGATCTCGGTGGAGTAGCAAGGAAATTGCAGAGTACGAGCAATAGTAATAGAAATGGGAATACGACCGGAACGCTGGCGAACAATGCAGCTGATTCTGATGATTTGTTACCTGGCTTTGGTGTTAGCAATGCTTCCAATAGTGGGTATGTATTTTCTGAGCAAATGTCAGATGCGTTAATTAACTCTGTATGTTTATGCTATTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

12.71

Weight (kDa)

4.05

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 17
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 281, 306
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 63, 254
AluI AGCT 2 cut(s) 63, 254
Alw21I GWGCWC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 140, 251
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AsuHPI GGTGA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 127, 263
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 141, 252
BlsI GCNGC 2 cut(s) 142, 253
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 19, 126
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 325
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BsaWI WCCGGW 2 cut(s) 65, 230
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 306
Bse3DI GCAATG 2 cut(s) 157, 298
BseBI CCWGG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 281, 306
BseMI GCAATG 2 cut(s) 157, 298
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 127, 263
BseYI CCCAGC 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 66, 231
BslI CCNNNNNNNGG 2 cut(s) 281, 306
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 19, 126
BspMI ACCTGC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 157, 298
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 321
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 127, 263
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 5 cut(s) 45, 63, 125, 254, 279
CviKI_1 RGCY 5 cut(s) 45, 63, 125, 254, 279
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 65
FaiI YATR 3 cut(s) 312, 355, 361
Fnu4HI GCNGC 2 cut(s) 141, 252
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 141, 252
GluI GCNGC 2 cut(s) 141, 252
GsaI CCCAGC 1 cut(s) 164
HapII CCGG 2 cut(s) 66, 231
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 66, 231
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 5 cut(s) 129, 147, 262, 322, 334
Hpy99I CGWCG 2 cut(s) 31, 44
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 193, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 26
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 60, 68, 130, 148
LpnPI CCDG 7 cut(s) 79, 146, 170, 224, 244, 261, 288
Lsp1109I GCAGC 2 cut(s) 127, 263
LweI GCATC 1 cut(s) 325
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 107, 111
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 188, 342
MnlI CCTC 1 cut(s) 85
MseI TTAA 3 cut(s) 78, 341, 345
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 2 cut(s) 66, 231
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 19, 126
PacI TTAATTAA 1 cut(s) 345
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 142, 253
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 19, 126
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 3 cut(s) 78, 341, 345
SatI GCNGC 2 cut(s) 141, 252
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 65
SetI ASST 5 cut(s) 29, 65, 159, 256, 277
SfaNI GCATC 1 cut(s) 325
Sse9I AATT 2 cut(s) 188, 342
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 274
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 188, 342
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 78, 341, 345
Tru9I TTAA 3 cut(s) 78, 341, 345
TseI GCWGC 2 cut(s) 140, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.