Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004318.1

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1243

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 454 bp

atcggtgctctatggcccaaattctagtagtaacgaagggtacaggagcaaggtgaaagtgaacaagaacgaagggcaggagcaaggtgaaagtgaacaaggacgaagggcaaaggagcaaggtgaacgtggacaattagaaaggtcactagagaaagccaacgctgcaacggctgcatgccaacgctccttacgtatgagaattgctgggactgtggatcctaaactagagttgtgggctgcagagaaagaagggaatcttcgtgcaatattgtcttcattgcaagacgttctttggcctgactctggatgggatccagtttcactcacagatctgattacttctggttcagttaaaaaggtttacagaaaggccacattgtttgtccatccagataaggttcaacagaaaggagctacaatatataaatatctttgttacactttttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.7

Weight (kDa)

9.23

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	213, 226, 309, 322
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	405
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	4 cut(s)	213, 226, 309, 322
AoxI	GGCC	3 cut(s)	14, 297, 373
ApeKI	GCWGC	3 cut(s)	165, 174, 240
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	65, 99, 135
BamHI	GGATCC	2 cut(s)	218, 314
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	152, 161, 227
BccI	CCATC	2 cut(s)	304, 397
BceAI	ACGGC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	25, 150, 228
BfmI	CTRYAG	1 cut(s)	241
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	3 cut(s)	166, 175, 241
BlsI	GCNGC	3 cut(s)	167, 176, 242
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	220, 316
BpiI	GAAGAC	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	315, 389
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	152, 161, 227
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	3 cut(s)	16, 299, 375
BsiHKAI	GWGCWC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	16, 299, 375
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	218, 314, 332
BspANI	GGCC	3 cut(s)	16, 299, 375
BspLI	GGNNCC	2 cut(s)	220, 316
BspMAI	CTGCAG	1 cut(s)	245
BspPI	GGATC	4 cut(s)	213, 226, 309, 322
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	218, 314, 332
Bst4CI	ACNGT	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	315, 389
BstKTI	GATC	3 cut(s)	221, 317, 335
BstMBI	GATC	3 cut(s)	218, 314, 332
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 171, 174
BstNSI	RCATGY	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	241
BstSNI	TACGTA	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	152, 161, 227
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	218, 314, 332
BstYI	RGATCY	3 cut(s)	218, 314, 332
BsuRI	GGCC	3 cut(s)	16, 299, 375
BtsCI	GGATG	2 cut(s)	315, 389
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	365, 400
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	16, 159, 174, 240, 299, 375, 417
CviKI_1	RGCY	7 cut(s)	16, 159, 174, 240, 299, 375, 417
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	3 cut(s)	220, 316, 334
DpnII	GATC	3 cut(s)	218, 314, 332
Eco105I	TACGTA	1 cut(s)	195
FaeI	CATG	1 cut(s)	181
FaiI	YATR	6 cut(s)	13, 179, 198, 425, 427, 452
FalI	AAGNNNNNCTT	4 cut(s)	244, 276, 277, 309
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	166, 175, 241
FokI	GGATG	2 cut(s)	322, 376
Fsp4HI	GCNGC	3 cut(s)	166, 175, 241
FspBI	CTAG	3 cut(s)	25, 150, 228
GluI	GCNGC	3 cut(s)	166, 175, 241
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	16, 299, 375
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	257, 303
HphI	GGTGA	3 cut(s)	65, 99, 135
Hpy166II	GTNNAC	5 cut(s)	62, 96, 126, 132, 365
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	307, 393
Hpy8I	GTNNAC	5 cut(s)	62, 96, 126, 132, 365
HpyAV	CCTTC	4 cut(s)	30, 66, 100, 246
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	3 cut(s)	128, 194, 289
HpyCH4V	TGCA	5 cut(s)	168, 177, 243, 267, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 171, 174
HpySE526I	ACGT	3 cut(s)	128, 194, 289
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	218, 314, 332
LmnI	GCTCC	5 cut(s)	46, 80, 116, 192, 414
LpnPI	CCDG	8 cut(s)	29, 63, 193, 292, 313, 331, 331, 406
Lsp1109I	GCAGC	3 cut(s)	152, 161, 227
MaeI	CTAG	3 cut(s)	25, 150, 228
MaeII	ACGT	3 cut(s)	128, 194, 289
MaeIII	GTNAC	3 cut(s)	30, 145, 438
MalI	GATC	3 cut(s)	220, 316, 334
MboI	GATC	3 cut(s)	218, 314, 332
MboII	GAAGA	2 cut(s)	252, 268
MflI	RGATCY	3 cut(s)	218, 314, 332
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	20, 135, 202
MlyI	GAGTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	355
MwoI	GCNNNNNNNGC	3 cut(s)	165, 171, 174
NdeII	GATC	3 cut(s)	218, 314, 332
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	220, 316
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	167, 176, 242
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Ppu21I	YACGTR	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	220, 316
PspPI	GGNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	245
PsuI	RGATCY	3 cut(s)	218, 314, 332
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	355
SatI	GCNGC	3 cut(s)	166, 175, 241
Sau3AI	GATC	3 cut(s)	218, 314, 332
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	241
SnaBI	TACGTA	1 cut(s)	195
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	20, 135, 202
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	3 cut(s)	25, 150, 228
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	3 cut(s)	131, 197, 292
TasI	AATT	3 cut(s)	20, 135, 202
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	165, 174, 240
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	268, 439
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	3 cut(s)	25, 150, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.