Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Forward (+)

11747887 .. 11749139

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCCACTCTTGTCGCTGTTTAACGGTTCTTAGTAAAGGACGAAGGGTACAGGAGCAAAGTGAAAGTGAACAAGAACGAAGGGCACAGGAGCAAGGTGAAAGTGAACAAGGACGAAGGGCAAAGGAGCAAGGTGAACGTGGACAATTAGAAAGAGAATTGCTGGGACTCTGGATCCTAAAGTATAGTTGTGGGCTGCAGAGAAAGAAGGGAATCTTCGTGCAATATTGTCTTCATTGCAAGACGTATGTTATTTTACCTAGTAGTATGCTTCATATGTTTTGCATTGTTCTTTGGCCTGACTGTGGATGGGAGCCAGTTTCACTCACAGATCTGATTACTTCTGGTTCAGTTAAAAAGGCTTACAGAAAGGCCACATTGTTTGTCCATCCAGATAAGGACCTCATCATTGGTGACTTCTTGACGGACTTGTCCACTTGCAAGATTTTGACGATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

8.42

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	169, 182
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	458
AlwI	GGATC	2 cut(s)	169, 182
AoxI	GGCC	3 cut(s)	4, 296, 372
ApeKI	GCWGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	4, 400
AsuHPI	GGTGA	3 cut(s)	110, 146, 425
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	303, 396
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	4, 400
BmiI	GGNNCC	2 cut(s)	176, 315
BpiI	GAAGAC	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	314, 388
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	6, 298, 374
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	6, 298, 374
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	174, 331
BspANI	GGCC	3 cut(s)	6, 298, 374
BspLI	GGNNCC	2 cut(s)	176, 315
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	2 cut(s)	169, 182
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	174, 331
Bst4CI	ACNGT	2 cut(s)	28, 305
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	314, 388
BstKTI	GATC	2 cut(s)	177, 334
BstMBI	GATC	2 cut(s)	174, 331
BstSFI	CTRYAG	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	174, 331
BstYI	RGATCY	2 cut(s)	174, 331
BsuRI	GGCC	3 cut(s)	6, 298, 374
BtsCI	GGATG	2 cut(s)	314, 388
Cfr13I	GGNCC	2 cut(s)	4, 400
Csp6I	GTAC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviJI	RGCY	6 cut(s)	6, 196, 298, 316, 362, 374
CviKI_1	RGCY	6 cut(s)	6, 196, 298, 316, 362, 374
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	176, 333
DpnII	GATC	2 cut(s)	174, 331
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	400
FaiI	YATR	5 cut(s)	186, 249, 269, 276, 278
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	321, 375
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	6, 298, 374
HinfI	GANTC	2 cut(s)	168, 213
HphI	GGTGA	3 cut(s)	110, 146, 425
Hpy166II	GTNNAC	5 cut(s)	71, 107, 137, 143, 435
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	3 cut(s)	172, 392, 421
Hpy8I	GTNNAC	5 cut(s)	71, 107, 137, 143, 435
HpyAV	CCTTC	4 cut(s)	39, 75, 111, 202
HpyCH4III	ACNGT	2 cut(s)	28, 305
HpyCH4IV	ACGT	2 cut(s)	139, 245
HpyCH4V	TGCA	5 cut(s)	199, 223, 240, 285, 441
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	2 cut(s)	139, 245
Kzo9I	GATC	2 cut(s)	174, 331
LmnI	GCTCC	4 cut(s)	55, 91, 127, 313
LpnPI	CCDG	8 cut(s)	38, 74, 149, 157, 312, 330, 330, 405
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	139, 245
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	176, 333
MboI	GATC	2 cut(s)	174, 331
MboII	GAAGA	2 cut(s)	208, 224
MflI	RGATCY	2 cut(s)	174, 331
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	146, 158
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	413
MseI	TTAA	2 cut(s)	23, 354
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	2 cut(s)	174, 331
NlaIV	GGNNCC	2 cut(s)	176, 315
NmuCI	GTSAC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	176, 315
PspPI	GGNCC	2 cut(s)	4, 400
PspPPI	RGGWCCY	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	174, 331
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	23, 354
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	174, 331
Sau96I	GGNCC	2 cut(s)	4, 400
SchI	GAGTC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	100, 136, 142, 248, 262, 405
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	2 cut(s)	146, 158
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	28, 305
TaiI	ACGT	2 cut(s)	142, 248
TasI	AATT	2 cut(s)	146, 158
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	23, 354
Tru9I	TTAA	2 cut(s)	23, 354
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	224, 263
TspGWI	ACGGA	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	400
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.