Rorug06G0263000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004909
Physical Location & Seq
Reverse (-)
40886069 .. 40887505
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0263000.1

Sequence Viewer

Length: 513 bp
ATGAATTCTAGGAGCTTATTGTTATCTCCAAACCCTAATTCCCTCAAATCTAGGTTCACCAAAGGATTGCTGAGAGCCCTGTCGAGAATAAATAAGCATCGTCAGCAACCCAGATCATCAAGAGAGATCCGGAAACGCCATCGTCTAATCAAAGCTGCTGCTTATGGATCCATGGCTTCTTCTGTAGGGAATAGAAGAGCTTGGAGTCGGGCGTTGCTTTGGAAGATCCGAAATCAGACACGTAGAGGCTACGCGGCGACGAGAAATATTGGCAGCAGTACTCGTCAGTTGTCCATGAAGAAAAGAATATGTGATCTGCAGAAAGGGAATAATAGCAAGAACCGGGTCGAGGTTGGTGGTTTGGGTCAAGTAGATAAGCTTCGGAGGCTTGTTCCGGGCGGTCAGGTCATGCATACTTGCAGCTTGTTGGAAGAAACTGCTCATTACATGAAGTGCCTTGCCACACAGGTAAAGGTGATGACAAGAATTGTGGAAGTTTACAATATCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.37

Weight (kDa)

11.75

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 13 - 79 6.3e-15 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 254
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 2 cut(s) 254, 399
AclWI GGATC 4 cut(s) 121, 162, 175, 220
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 239
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 5 cut(s) 15, 155, 200, 379, 423
AluI AGCT 5 cut(s) 15, 155, 200, 379, 423
AlwI GGATC 4 cut(s) 121, 162, 175, 220
Aor13HI TCCGGA 1 cut(s) 129
ApeKI GCWGC 4 cut(s) 155, 158, 273, 420
ApoI RAATTY 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 344, 396
AsuHPI GGTGA 2 cut(s) 49, 487
BamHI GGATCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BbvI GCAGC 4 cut(s) 142, 145, 285, 432
BccI CCATC 1 cut(s) 147
BcnI CCSGG 2 cut(s) 344, 396
BfaI CTAG 2 cut(s) 9, 51
BfmI CTRYAG 2 cut(s) 183, 317
BisI GCNGC 5 cut(s) 156, 159, 255, 274, 421
BlsI GCNGC 5 cut(s) 157, 160, 256, 275, 422
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 344, 396
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 344, 396
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 344, 396
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 62
BseXI GCAGC 4 cut(s) 142, 145, 285, 432
Bsh1236I CGCG 1 cut(s) 254
BsiSI CCGG 3 cut(s) 130, 343, 395
BslI CCNNNNNNNGG 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 5 cut(s) 113, 126, 167, 225, 313
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 2 cut(s) 254, 399
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 4 cut(s) 121, 162, 175, 220
BspQI GCTCTTC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 5 cut(s) 113, 126, 167, 225, 313
BssT1I CCWWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 5 cut(s) 116, 129, 170, 228, 316
BstMBI GATC 5 cut(s) 113, 126, 167, 225, 313
BstMWI GCNNNNNNNGC 2 cut(s) 103, 385
BstSCI CCNGG 2 cut(s) 342, 394
BstSFI CTRYAG 2 cut(s) 183, 317
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 142, 145, 285, 432
BstX2I RGATCY 3 cut(s) 126, 167, 225
BstYI RGATCY 3 cut(s) 126, 167, 225
BtgI CCRYGG 1 cut(s) 171
Csp6I GTAC 1 cut(s) 279
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 4 cut(s) 172, 295, 409, 448
CviJI RGCY 9 cut(s) 15, 77, 155, 176, 200, 249, 379, 388, 423
CviKI_1 RGCY 9 cut(s) 15, 77, 155, 176, 200, 249, 379, 388, 423
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 71
DpnI GATC 5 cut(s) 115, 128, 169, 227, 315
DpnII GATC 5 cut(s) 113, 126, 167, 225, 313
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 175, 298, 412, 451
FaiI YATR 8 cut(s) 165, 173, 296, 310, 410, 414, 449, 511
FatI CATG 4 cut(s) 171, 294, 408, 447
Fnu4HI GCNGC 5 cut(s) 156, 159, 255, 274, 421
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 5 cut(s) 156, 159, 255, 274, 421
FspBI CTAG 2 cut(s) 9, 51
GluI GCNGC 5 cut(s) 156, 159, 255, 274, 421
HapII CCGG 3 cut(s) 130, 343, 395
Hin1II CATG 4 cut(s) 175, 298, 412, 451
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 1 cut(s) 205
HpaII CCGG 3 cut(s) 130, 343, 395
HphI GGTGA 2 cut(s) 49, 487
Hpy166II GTNNAC 2 cut(s) 57, 499
Hpy188I TCNGA 3 cut(s) 230, 237, 384
Hpy188III TCNNGA 3 cut(s) 84, 120, 130
Hpy8I GTNNAC 2 cut(s) 57, 499
Hpy99I CGWCG 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 319, 412, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 385
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 4 cut(s) 175, 298, 412, 451
Kpn2I TCCGGA 1 cut(s) 129
Kzo9I GATC 5 cut(s) 113, 126, 167, 225, 313
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 92, 124, 143, 356, 389, 408, 452
Lsp1109I GCAGC 4 cut(s) 142, 145, 285, 432
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 9, 51
MaeII ACGT 1 cut(s) 241
MalI GATC 5 cut(s) 115, 128, 169, 227, 315
MboI GATC 5 cut(s) 113, 126, 167, 225, 313
MboII GAAGA 5 cut(s) 171, 207, 235, 310, 443
MflI RGATCY 3 cut(s) 126, 167, 225
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 4, 37, 486
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 4 cut(s) 53, 239, 343, 378
Mph1103I ATGCAT 1 cut(s) 414
MroI TCCGGA 1 cut(s) 129
MspI CCGG 3 cut(s) 130, 343, 395
MspR9I CCNGG 2 cut(s) 344, 396
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 103, 385
NciI CCSGG 2 cut(s) 344, 396
NcoI CCATGG 1 cut(s) 171
NdeII GATC 5 cut(s) 113, 126, 167, 225, 313
NlaIII CATG 4 cut(s) 175, 298, 412, 451
NlaIV GGNNCC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 190
PkrI GCNGC 5 cut(s) 157, 160, 256, 275, 422
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 3 cut(s) 126, 167, 225
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 190
SatI GCNGC 5 cut(s) 156, 159, 255, 274, 421
Sau3AI GATC 5 cut(s) 113, 126, 167, 225, 313
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 344, 396
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 183, 317
Sse9I AATT 3 cut(s) 4, 37, 486
SsiI CCGC 2 cut(s) 254, 399
SspI AATATT 1 cut(s) 268
SspMI CTAG 2 cut(s) 9, 51
StyD4I CCNGG 2 cut(s) 342, 394
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 83, 348
TasI AATT 3 cut(s) 4, 37, 486
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 257
TseI GCWGC 4 cut(s) 155, 158, 273, 420
TspDTI ATGAA 3 cut(s) 17, 311, 464
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 9, 51
ZrmI AGTACT 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.